assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	1	969564-971099	1,1,1,2,2	PILER-CR,CRISPRCasFinder,CRT,CRT,CRISPRCasFinder	no	cas3	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	25,23,24,24,23	25	Unclear	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|919aa|up_9|NZ_CP019213.3_956156_958913_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP019213.3_958969_960271_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP019213.3_960318_962553_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP019213.3_962630_962879_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP019213.3_962878_963214_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP019213.3_963284_964076_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP019213.3_964303_965941_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP019213.3_966028_967327_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP019213.3_967386_968259_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP019213.3_968552_969224_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP019213.3_971738_973217_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP019213.3_973243_974521_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP019213.3_974839_975625_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP019213.3_975694_977149_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP019213.3_977170_978580_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP019213.3_978557_979337_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP019213.3_979333_980194_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP019213.3_980341_980917_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP019213.3_980933_981194_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|121aa|down_9|NZ_CP019213.3_982533_982896_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	2	996649-997653	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,16,16	16	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|571aa|up_9|NZ_CP019213.3_985013_986726_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP019213.3_986799_987534_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP019213.3_987892_990559_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_6|NZ_CP019213.3_990973_992326_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP019213.3_992474_992957_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP019213.3_992969_994061_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP019213.3_994063_994738_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP019213.3_994724_995324_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP019213.3_995339_996257_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP019213.3_996258_996543_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP019213.3_997673_998711_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019213.3_998962_999871_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP019213.3_999872_1001300_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019213.3_1001299_1001905_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP019213.3_1001954_1002278_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019213.3_1002471_1002783_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019213.3_1002801_1003512_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019213.3_1003511_1003991_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019213.3_1003987_1005037_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019213.3_1005017_1005779_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	3	1533773-1533890	4	CRISPRCasFinder	no	cas14j	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	TypeV	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|397aa|up_9|NZ_CP019213.3_1522449_1523640_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|NZ_CP019213.3_1523636_1524896_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|NZ_CP019213.3_1524885_1526514_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|NZ_CP019213.3_1526786_1528145_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|360aa|up_5|NZ_CP019213.3_1528149_1529229_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|293aa|up_4|NZ_CP019213.3_1529273_1530152_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|397aa|up_3|NZ_CP019213.3_1530316_1531507_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP019213.3_1531587_1532238_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP019213.3_1532291_1532546_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP019213.3_1532545_1533676_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP019213.3_1533909_1536195_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP019213.3_1536890_1540649_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP019213.3_1540788_1541511_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP019213.3_1541657_1544285_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP019213.3_1544431_1546120_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP019213.3_1546116_1546740_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP019213.3_1546883_1551278_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP019213.3_1551278_1552928_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP019213.3_1552932_1553709_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_9|NZ_CP019213.3_1553983_1556833_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	4	2208276-2208399	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|30aa|down_7|NZ_CP019213.3_2217295_2217385_+	NA|70aa|up_9|NZ_CP019213.3_2198385_2198595_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_8|NZ_CP019213.3_2199049_2199676_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_7|NZ_CP019213.3_2199696_2201799_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_6|NZ_CP019213.3_2201811_2202450_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_5|NZ_CP019213.3_2202513_2203182_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_4|NZ_CP019213.3_2203178_2203964_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_3|NZ_CP019213.3_2203967_2204780_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_2|NZ_CP019213.3_2204791_2206396_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_1|NZ_CP019213.3_2206521_2206827_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|405aa|up_0|NZ_CP019213.3_2206953_2208167_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|419aa|down_0|NZ_CP019213.3_2208713_2209970_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP019213.3_2210010_2211384_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP019213.3_2211598_2212240_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP019213.3_2212279_2213428_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP019213.3_2213718_2214930_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP019213.3_2215042_2215975_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP019213.3_2215971_2216997_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP019213.3_2217295_2217385_+	NA	NA|390aa|down_8|NZ_CP019213.3_2217550_2218720_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP019213.3_2218954_2219536_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	5	2936139-2936230	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA|70aa|up_8|NZ_CP019213.3_2925258_2925468_-,NA	NA|503aa|up_9|NZ_CP019213.3_2923591_2925100_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP019213.3_2925258_2925468_-	NA	NA|1321aa|up_7|NZ_CP019213.3_2925522_2929485_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP019213.3_2929524_2930163_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP019213.3_2930450_2931542_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP019213.3_2931541_2932234_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP019213.3_2932245_2932632_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP019213.3_2932639_2933440_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|165aa|up_1|NZ_CP019213.3_2934007_2934502_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP019213.3_2934522_2935851_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP019213.3_2936654_2937251_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP019213.3_2937271_2937499_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP019213.3_2937536_2938778_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP019213.3_2939070_2940327_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP019213.3_2941364_2942285_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP019213.3_2942284_2942590_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP019213.3_2942741_2943341_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP019213.3_2943337_2945884_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP019213.3_2945883_2947056_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP019213.3_2947185_2947878_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	6	3078739-3078822	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|431aa|up_9|NZ_CP019213.3_3063640_3064933_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP019213.3_3065023_3066367_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP019213.3_3066377_3066989_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|NZ_CP019213.3_3067143_3071172_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP019213.3_3071306_3071801_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP019213.3_3072345_3073311_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP019213.3_3073433_3075200_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP019213.3_3075200_3076922_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP019213.3_3076963_3077668_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP019213.3_3077952_3078171_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP019213.3_3079034_3081311_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP019213.3_3081341_3081662_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP019213.3_3081984_3082209_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP019213.3_3082281_3084228_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP019213.3_3084224_3085340_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP019213.3_3085490_3086447_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP019213.3_3086443_3088102_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP019213.3_3088527_3089223_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP019213.3_3089717_3090617_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP019213.3_3090760_3092413_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	7	3209925-3210069	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|330aa|up_9|NZ_CP019213.3_3197823_3198813_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP019213.3_3199209_3200118_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP019213.3_3200309_3202331_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP019213.3_3202909_3203587_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP019213.3_3203579_3204335_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP019213.3_3204321_3205476_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP019213.3_3205472_3206513_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP019213.3_3206599_3207889_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP019213.3_3207947_3208424_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP019213.3_3208575_3209859_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP019213.3_3210092_3212354_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|351aa|down_1|NZ_CP019213.3_3214045_3215098_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_CP019213.3_3215281_3216235_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP019213.3_3216275_3217271_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP019213.3_3217425_3218244_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP019213.3_3218244_3219303_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP019213.3_3219305_3219995_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP019213.3_3219994_3220768_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP019213.3_3220934_3221084_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP019213.3_3221212_3222001_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	8	3446455-3446551	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|347aa|up_9|NZ_CP019213.3_3433813_3434854_-	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH	NA|181aa|up_8|NZ_CP019213.3_3439162_3439705_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP019213.3_3440175_3441042_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP019213.3_3441043_3441256_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP019213.3_3441363_3441885_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP019213.3_3441920_3443306_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP019213.3_3443479_3443974_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP019213.3_3443976_3444699_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP019213.3_3444816_3445326_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP019213.3_3445322_3446390_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP019213.3_3446584_3447478_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP019213.3_3447474_3448290_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP019213.3_3448300_3449560_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP019213.3_3449569_3451237_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP019213.3_3451553_3452603_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP019213.3_3452624_3453860_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP019213.3_3453870_3454656_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP019213.3_3454883_3456029_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP019213.3_3456050_3457352_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP019213.3_3457408_3458770_-	PRK08044, PRK08044, allantoinase AllB
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	9	3586696-3586840	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|28aa|down_2|NZ_CP019213.3_3588885_3588969_-	NA|357aa|up_9|NZ_CP019213.3_3571834_3572905_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP019213.3_3572997_3573579_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP019213.3_3573583_3575401_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP019213.3_3575556_3576930_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP019213.3_3577005_3578325_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP019213.3_3578731_3580027_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP019213.3_3580084_3580774_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP019213.3_3580963_3582166_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP019213.3_3582162_3585309_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP019213.3_3585434_3586619_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP019213.3_3586863_3587772_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP019213.3_3587896_3588808_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP019213.3_3588885_3588969_-	NA	NA|95aa|down_3|NZ_CP019213.3_3589454_3589739_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP019213.3_3589810_3590488_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP019213.3_3590745_3590937_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP019213.3_3590986_3591511_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP019213.3_3591687_3592152_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP019213.3_3592271_3593081_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP019213.3_3593097_3594213_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	10	3927050-3927185	3	PILER-CR	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|126aa|up_9|NZ_CP019213.3_3917759_3918137_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP019213.3_3918143_3918986_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP019213.3_3919063_3919543_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP019213.3_3919733_3921596_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP019213.3_3921588_3922119_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP019213.3_3922226_3923558_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP019213.3_3923614_3923902_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP019213.3_3923898_3925185_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP019213.3_3925235_3926177_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP019213.3_3926191_3926962_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP019213.3_3927433_3928948_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP019213.3_3928978_3930121_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP019213.3_3930249_3931467_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP019213.3_3931540_3933094_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP019213.3_3933202_3933988_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP019213.3_3933993_3934584_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP019213.3_3934702_3935098_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP019213.3_3935358_3938580_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP019213.3_3938597_3939746_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP019213.3_3940201_3941023_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_001969285.3_ASM196928v4	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	11	4211127-4211247	11	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	AAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|506aa|up_9|NZ_CP019213.3_4199737_4201255_+	PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed	NA|58aa|up_8|NZ_CP019213.3_4201373_4201547_-	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|99aa|up_7|NZ_CP019213.3_4201574_4201871_-	pfam11080, GhoS, Endoribonuclease GhoS	NA|91aa|up_6|NZ_CP019213.3_4202097_4202370_-	COG2388, COG2388, Predicted acetyltransferase [General function prediction only]	NA|77aa|up_5|NZ_CP019213.3_4202381_4202612_-	COG3592, COG3592, Uncharacterized conserved protein [Function unknown]	NA|544aa|up_4|NZ_CP019213.3_4202792_4204424_+	PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional	NA|240aa|up_3|NZ_CP019213.3_4204420_4205140_+	PRK10430, PRK10430, two-component system response regulator DcuR	NA|447aa|up_2|NZ_CP019213.3_4205710_4207051_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|549aa|up_1|NZ_CP019213.3_4207128_4208775_+	PRK15389, PRK15389, fumarate hydratase; Provisional	NA|210aa|up_0|NZ_CP019213.3_4208897_4209527_+	PRK09867, PRK09867, hypothetical protein; Provisional	NA|452aa|down_0|NZ_CP019213.3_4212047_4213403_-	PRK15076, PRK15076, alpha-galactosidase; Provisional	NA|303aa|down_1|NZ_CP019213.3_4213685_4214594_+	PRK10371, PRK10371, transcriptional regulator MelR	NA|756aa|down_2|NZ_CP019213.3_4214792_4217060_+	PRK15029, PRK15029, arginine decarboxylase; Provisional	NA|254aa|down_3|NZ_CP019213.3_4217384_4218146_+	PRK09978, PRK09978, DNA-binding transcriptional regulator GadX; Provisional	NA|446aa|down_4|NZ_CP019213.3_4218282_4219620_+	PRK10644, PRK10644, arginine/agmatine antiporter	NA|548aa|down_5|NZ_CP019213.3_4219723_4221367_+	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional	NA|223aa|down_6|NZ_CP019213.3_4221363_4222032_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|367aa|down_7|NZ_CP019213.3_4222032_4223133_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|30aa|down_8|NZ_CP019213.3_4223108_4223198_-	NF033224, PmrR, LpxT activity modulator PmrR	NA|501aa|down_9|NZ_CP019213.3_4223309_4224812_-	PRK10642, PRK10642, proline/glycine betaine transporter ProP
