assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	1	458114-458215	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|70aa|up_8|NZ_CP018766.1_449673_449883_-,NA|128aa|up_6|NZ_CP018766.1_450707_451091_-,NA|33aa|up_0|NZ_CP018766.1_457338_457437_+,NA|221aa|down_1|NZ_CP018766.1_459305_459968_-,NA|179aa|down_7|NZ_CP018766.1_466059_466596_-	NA|84aa|up_9|NZ_CP018766.1_449383_449635_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP018766.1_449673_449883_-	NA	NA|194aa|up_7|NZ_CP018766.1_450060_450642_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP018766.1_450707_451091_-	NA	NA|209aa|up_5|NZ_CP018766.1_451360_451987_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP018766.1_452430_453954_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP018766.1_453969_454539_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP018766.1_455030_455786_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP018766.1_455865_457254_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP018766.1_457338_457437_+	NA	NA|319aa|down_0|NZ_CP018766.1_458231_459188_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP018766.1_459305_459968_-	NA	NA|136aa|down_2|NZ_CP018766.1_460110_460518_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP018766.1_461030_461609_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP018766.1_461608_462877_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP018766.1_462914_464381_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP018766.1_464405_465947_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP018766.1_466059_466596_-	NA	NA|235aa|down_8|NZ_CP018766.1_466987_467692_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP018766.1_468090_468363_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2	813306-813388	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|69aa|up_9|NZ_CP018766.1_799919_800126_+,NA|34aa|down_1|NZ_CP018766.1_815043_815145_+,NA|52aa|down_8|NZ_CP018766.1_822991_823147_+	NA|69aa|up_9|NZ_CP018766.1_799919_800126_+	NA	NA|237aa|up_8|NZ_CP018766.1_800213_800924_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP018766.1_800907_801912_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP018766.1_802385_804326_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP018766.1_804595_806479_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP018766.1_806490_808272_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP018766.1_808493_809471_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP018766.1_809463_810978_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP018766.1_811217_812276_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP018766.1_812614_813157_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP018766.1_814035_814953_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP018766.1_815043_815145_+	NA	NA|502aa|down_2|NZ_CP018766.1_815222_816728_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP018766.1_817068_817569_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP018766.1_817588_818455_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP018766.1_819255_819654_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP018766.1_819616_821722_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP018766.1_821839_822811_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP018766.1_822991_823147_+	NA	NA|324aa|down_9|NZ_CP018766.1_823185_824157_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	3	854253-854331	3	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	854277-854307	NZ_CP018766.1_1771564-1771594	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,RT,WYL	NA|35aa|up_7|NZ_CP018766.1_845129_845234_+,NA|36aa|up_5|NZ_CP018766.1_846666_846774_+,NA	NA|191aa|up_9|NZ_CP018766.1_841570_842143_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP018766.1_842556_845088_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP018766.1_845129_845234_+	NA	NA|370aa|up_6|NZ_CP018766.1_845402_846513_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP018766.1_846666_846774_+	NA	NA|280aa|up_4|NZ_CP018766.1_846921_847761_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP018766.1_847934_848585_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP018766.1_848581_848818_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP018766.1_849086_851072_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP018766.1_851079_853926_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP018766.1_854589_855522_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP018766.1_855527_856367_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP018766.1_856374_856860_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP018766.1_856867_858307_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP018766.1_858373_859309_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP018766.1_860193_861105_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP018766.1_861101_862097_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP018766.1_862207_863152_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP018766.1_863715_864303_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP018766.1_864545_865448_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	4	859707-859976	1	CRT	no	cas3	csa3,cas3,DEDDh,DinG,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	38	859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859743-859764|859801-859823|859801-859823|859801-859823|859801-859823|859801-859823|859801-859823|859801-859823|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859860-859881|859918-859940|859918-859940|859918-859940|859918-859940|859918-859940|859918-859940|859918-859940	NZ_CP018766.1_221043-221022|NZ_CP018766.1_344120-344099|NZ_CP018766.1_686336-686315|NZ_CP018766.1_812347-812368|NZ_CP018766.1_903063-903084|NZ_CP018766.1_1421965-1421944|NZ_CP018766.1_1737157-1737178|NZ_CP018766.1_1751712-1751691|NZ_CP018766.1_2068806-2068827|NZ_CP018766.1_1017380-1017401|NZ_CP018766.1_1771419-1771440|NZ_CP018766.1_1771652-1771673|NZ_CP018766.1_813319-813297|NZ_CP018766.1_813597-813575|NZ_CP018766.1_1422082-1422060|NZ_CP018766.1_2068864-2068886|NZ_CP018766.1_2410077-2410099|NZ_CP018766.1_1510378-1510400|NZ_CP018766.1_2171409-2171431|NZ_CP018766.1_221043-221022|NZ_CP018766.1_344120-344099|NZ_CP018766.1_686336-686315|NZ_CP018766.1_812347-812368|NZ_CP018766.1_903063-903084|NZ_CP018766.1_1421965-1421944|NZ_CP018766.1_1737157-1737178|NZ_CP018766.1_1751712-1751691|NZ_CP018766.1_2068806-2068827|NZ_CP018766.1_1017380-1017401|NZ_CP018766.1_1771419-1771440|NZ_CP018766.1_1771652-1771673|NZ_CP018766.1_813319-813297|NZ_CP018766.1_813597-813575|NZ_CP018766.1_1422082-1422060|NZ_CP018766.1_2068864-2068886|NZ_CP018766.1_2410077-2410099|NZ_CP018766.1_1510378-1510400|NZ_CP018766.1_2171409-2171431	NA	4	4	Unclear	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP018766.1_846921_847761_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP018766.1_847934_848585_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP018766.1_848581_848818_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP018766.1_849086_851072_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP018766.1_851079_853926_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP018766.1_854589_855522_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP018766.1_855527_856367_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP018766.1_856374_856860_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP018766.1_856867_858307_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP018766.1_858373_859309_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP018766.1_860193_861105_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP018766.1_861101_862097_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP018766.1_862207_863152_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP018766.1_863715_864303_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP018766.1_864545_865448_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP018766.1_866150_866780_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP018766.1_867592_868606_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP018766.1_868658_869669_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP018766.1_869807_870998_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP018766.1_871119_871881_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	5	902990-903071	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	903014-903047	NZ_CP018766.1_1422073-1422040	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP018766.1_896092_896674_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP018766.1_896746_897364_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP018766.1_897518_898013_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP018766.1_898411_898834_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP018766.1_898981_899698_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP018766.1_899780_900320_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP018766.1_900470_900791_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP018766.1_900934_901291_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP018766.1_901448_901829_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP018766.1_902007_902886_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP018766.1_903682_904069_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP018766.1_904061_904358_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP018766.1_904607_905633_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP018766.1_905625_906321_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP018766.1_906338_907160_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP018766.1_907513_907708_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP018766.1_907941_908793_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP018766.1_909120_909882_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP018766.1_909979_911287_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP018766.1_911392_912643_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	6	1737081-1737165	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1737107-1737139	NZ_CP018766.1_1422073-1422041	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP018766.1_1726290_1726974_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP018766.1_1727217_1727394_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP018766.1_1727686_1729033_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP018766.1_1729039_1729792_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP018766.1_1729793_1730732_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP018766.1_1730735_1731875_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP018766.1_1732010_1733843_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP018766.1_1733911_1734538_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP018766.1_1734569_1735547_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP018766.1_1735647_1736772_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP018766.1_1737337_1739161_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP018766.1_1739506_1739758_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP018766.1_1739802_1740777_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP018766.1_1740833_1743035_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP018766.1_1743039_1743501_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP018766.1_1743592_1744279_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP018766.1_1744318_1745035_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP018766.1_1745037_1745391_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP018766.1_1745391_1745976_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP018766.1_1745965_1746535_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	7	2171328-2171409	6	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2171352-2171385|2171352-2171385|2171352-2171385|2171352-2171385|2171352-2171385	NZ_CP018766.1_854252-854285|NZ_CP018766.1_1210333-1210300|NZ_CP018766.1_1863777-1863744|NZ_CP018766.1_1426414-1426447|NZ_CP018766.1_2859254-2859287	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|114aa|up_7|NZ_CP018766.1_2163073_2163415_+,NA|61aa|up_6|NZ_CP018766.1_2163618_2163801_+,NA|81aa|up_4|NZ_CP018766.1_2164893_2165136_+,NA	NA|238aa|up_9|NZ_CP018766.1_2161406_2162120_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_CP018766.1_2162135_2163068_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_CP018766.1_2163073_2163415_+	NA	NA|61aa|up_6|NZ_CP018766.1_2163618_2163801_+	NA	NA|328aa|up_5|NZ_CP018766.1_2163899_2164883_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_CP018766.1_2164893_2165136_+	NA	NA|346aa|up_3|NZ_CP018766.1_2165198_2166236_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP018766.1_2167354_2168371_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP018766.1_2168392_2169448_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP018766.1_2169883_2171107_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP018766.1_2171550_2172858_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP018766.1_2173397_2175014_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP018766.1_2175089_2175374_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP018766.1_2175548_2176292_+	pfam02517, Abi, CAAX protease self-immunity	NA|407aa|down_4|NZ_CP018766.1_2176316_2177537_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP018766.1_2177733_2178360_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP018766.1_2178720_2179506_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP018766.1_2180105_2180240_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP018766.1_2180475_2181039_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP018766.1_2181041_2181185_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	8	2300546-2300626	7	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|77aa|up_5|NZ_CP018766.1_2295420_2295651_-,NA|364aa|up_0|NZ_CP018766.1_2299437_2300529_+,NA|35aa|down_0|NZ_CP018766.1_2300961_2301066_-,NA|53aa|down_1|NZ_CP018766.1_2301745_2301904_+	NA|237aa|up_9|NZ_CP018766.1_2291031_2291742_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP018766.1_2291862_2292306_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP018766.1_2292505_2292919_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP018766.1_2293375_2294749_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP018766.1_2295420_2295651_-	NA	NA|313aa|up_4|NZ_CP018766.1_2295681_2296620_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP018766.1_2297055_2297721_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP018766.1_2297872_2298193_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP018766.1_2298194_2299172_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP018766.1_2299437_2300529_+	NA	NA|35aa|down_0|NZ_CP018766.1_2300961_2301066_-	NA	NA|53aa|down_1|NZ_CP018766.1_2301745_2301904_+	NA	NA|286aa|down_2|NZ_CP018766.1_2302561_2303419_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP018766.1_2303486_2304269_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP018766.1_2304500_2306306_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP018766.1_2306986_2308525_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP018766.1_2308559_2310692_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP018766.1_2310703_2311138_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP018766.1_2311137_2312244_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP018766.1_2312562_2320008_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	9	2312867-2312952	8	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|364aa|up_9|NZ_CP018766.1_2299437_2300529_+,NA|35aa|up_8|NZ_CP018766.1_2300961_2301066_-,NA|53aa|up_7|NZ_CP018766.1_2301745_2301904_+,NA	NA|364aa|up_9|NZ_CP018766.1_2299437_2300529_+	NA	NA|35aa|up_8|NZ_CP018766.1_2300961_2301066_-	NA	NA|53aa|up_7|NZ_CP018766.1_2301745_2301904_+	NA	NA|286aa|up_6|NZ_CP018766.1_2302561_2303419_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP018766.1_2303486_2304269_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP018766.1_2304500_2306306_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP018766.1_2306986_2308525_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP018766.1_2308559_2310692_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP018766.1_2310703_2311138_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP018766.1_2311137_2312244_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP018766.1_2320285_2321641_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP018766.1_2321667_2322600_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP018766.1_2322601_2323411_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP018766.1_2323599_2324508_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP018766.1_2330747_2331812_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP018766.1_2331959_2333402_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP018766.1_2333724_2334198_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP018766.1_2334296_2335640_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP018766.1_2335816_2336500_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP018766.1_2336518_2337706_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001975005.1_ASM197500v1	NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	10	2420906-2420986	9	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961|2420931-2420961	NZ_CP018766.1_866995-867025|NZ_CP018766.1_867051-867081|NZ_CP018766.1_122380-122410|NZ_CP018766.1_419406-419376|NZ_CP018766.1_686400-686370|NZ_CP018766.1_867107-867137|NZ_CP018766.1_903326-903356|NZ_CP018766.1_1113377-1113407|NZ_CP018766.1_1215931-1215901|NZ_CP018766.1_1422029-1421999|NZ_CP018766.1_1510431-1510461|NZ_CP018766.1_1751775-1751745|NZ_CP018766.1_2067458-2067488|NZ_CP018766.1_2410130-2410160|NZ_CP018766.1_2585655-2585685	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|55aa|up_9|NZ_CP018766.1_2411439_2411604_+,NA|106aa|up_8|NZ_CP018766.1_2411848_2412166_+,NA|84aa|up_5|NZ_CP018766.1_2417287_2417539_+,NA|62aa|up_0|NZ_CP018766.1_2420678_2420864_+,NA	NA|55aa|up_9|NZ_CP018766.1_2411439_2411604_+	NA	NA|106aa|up_8|NZ_CP018766.1_2411848_2412166_+	NA	NA|1056aa|up_7|NZ_CP018766.1_2412349_2415517_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP018766.1_2415633_2416899_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP018766.1_2417287_2417539_+	NA	NA|255aa|up_4|NZ_CP018766.1_2417530_2418295_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP018766.1_2418456_2418897_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP018766.1_2418889_2420101_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP018766.1_2420202_2420553_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP018766.1_2420678_2420864_+	NA	NA|341aa|down_0|NZ_CP018766.1_2421129_2422152_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP018766.1_2422171_2422771_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP018766.1_2422777_2423011_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP018766.1_2423016_2423463_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP018766.1_2423476_2423962_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP018766.1_2423958_2425218_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP018766.1_2425280_2425775_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP018766.1_2425776_2426283_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP018766.1_2426313_2427318_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP018766.1_2427487_2428093_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
