The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	49049	93590	2900381	integrase,transposase	Staphylococcus_phage(60.0%)	36	58780:58797	95549:95566
WP_000832687.1|49049_49901_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	95.7	1.4e-69
WP_000036756.1|50000_50930_-	carbamate kinase	NA	NA	NA	NA	NA
WP_000793596.1|50949_51948_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000272781.1|51985_52675_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_000344142.1|52716_54138_-	arginine-ornithine antiporter	NA	NA	NA	NA	NA
WP_000249804.1|54223_55459_-	arginine deiminase	NA	NA	NA	NA	NA
WP_000711815.1|55727_56174_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_078147993.1|57117_57429_+	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_000475804.1|57699_58131_-	universal stress protein	NA	NA	NA	NA	NA
58780:58797	attL	TTATATATTATTTATTTA	NA	NA	NA	NA
WP_000916431.1|59012_59339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106065.1|59354_60029_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.5	9.6e-122
WP_000400093.1|60788_61022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000393941.1|66907_68524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000640645.1|68683_70195_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_001621813.1|70217_71876_-	glutamate ligase	NA	NA	NA	NA	NA
WP_001621810.1|71869_72268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566670.1|73349_74606_+	DUF3578 domain-containing protein	NA	NA	NA	NA	NA
WP_001282728.1|75020_75260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106057.1|75291_75966_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|76230_76974_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|77070_77499_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_001801873.1|77544_79554_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_000952923.1|79650_81408_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_000369214.1|81407_81779_+	mecA-type methicillin resistance repressor MecI	NA	NA	NA	NA	NA
WP_014532405.1|81863_81932_-	phenol-soluble modulin PSM-mec	NA	NA	NA	NA	NA
WP_010922808.1|82264_83395_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_000438836.1|84875_85940_-	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
WP_000220507.1|86075_86336_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_000350222.1|86335_86980_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001092058.1|87318_87981_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010959190.1|88372_88432_+	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001072201.1|88441_89173_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|89298_90081_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|90231_90609_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|90615_92508_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|92504_93590_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
95549:95566	attR	TTATATATTATTTATTTA	NA	NA	NA	NA
>prophage 2
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	791425	799246	2900381		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|791425_792481_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|792480_793167_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|793141_793615_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|793957_794398_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|794677_795262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|795360_796074_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|796077_796497_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|796498_797167_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|797517_798111_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|798094_799246_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	811217	825858	2900381		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|811217_812276_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|812614_813157_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|814035_814953_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|815043_815145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|815222_816728_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|817068_817569_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|817588_818455_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|819255_819654_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|819616_821722_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|821839_822811_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|822991_823147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|823185_824157_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|824143_825100_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|825096_825858_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	911392	968320	2900381	portal,plate,integrase,capsid,head,holin,terminase,tail,transposase	Staphylococcus_phage(78.08%)	85	909489:909505	944140:944156
909489:909505	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006450.1|911392_912643_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|912632_913097_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|913247_914645_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145726.1|914712_915762_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_000337826.1|915874_916054_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|916033_916966_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000661437.1|916997_917723_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|917750_918425_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|918441_918774_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|919036_919231_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|919230_919998_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|919998_920223_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001094943.1|920262_920712_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000977381.1|920725_920947_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000066011.1|920939_921101_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000165363.1|921194_921497_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000291090.1|921501_921762_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815401.1|921771_921993_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139720.1|921985_922609_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934385.1|922608_923037_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_001124438.1|923050_923725_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_001081076.1|923721_923871_+	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000414755.1|923863_924145_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190254.1|924210_924981_+	phage protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000803062.1|924990_925770_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_031785911.1|925763_925922_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	98.1	1.7e-21
WP_001123695.1|925934_926156_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000049794.1|926165_926570_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001187243.1|926574_926760_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|926760_927066_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029376.1|927193_927550_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000131376.1|927553_927796_+	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_001557190.1|927804_928176_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_001065060.1|928168_928423_+	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_000714412.1|928409_928580_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	91.1	1.5e-20
WP_000185647.1|928572_929106_+	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_000617154.1|929142_929349_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000132921.1|929345_929540_+	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_001072795.1|929536_929740_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608278.1|929732_929969_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_000595257.1|929961_930135_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000990004.1|930135_930240_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000162701.1|930305_930728_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_001038244.1|930915_931410_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_031785918.1|931412_932708_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	99.8	2.0e-256
WP_001624550.1|932718_934257_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	99.8	1.2e-292
WP_001133044.1|934263_935259_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|935331_935502_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392151.1|935610_936231_+	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000438511.1|936244_937219_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114086.1|937240_937528_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000208960.1|937536_937869_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|937865_938168_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|938167_938515_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188643.1|938526_938910_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_000002577.1|938928_939510_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100161.1|939571_939937_+|tail	tail assembly chaperone	tail	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|939966_940311_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001624551.1|940327_943792_+	hypothetical protein	NA	Q4ZDE1	Staphylococcus_virus	98.8	2.7e-260
WP_001557971.1|943804_944752_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
944140:944156	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_000152714.1|944760_946662_+|tail	phage tail protein	tail	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_031862457.1|946676_948587_+	hypothetical protein	NA	S4V9M9	Staphylococcus_phage	98.0	0.0e+00
WP_031862516.1|948586_950410_+|plate	phage baseplate upper protein	plate	S4V7L3	Staphylococcus_phage	99.8	0.0e+00
WP_000705902.1|950409_950787_+	DUF2977 domain-containing protein	NA	S4V993	Staphylococcus_phage	100.0	6.9e-61
WP_001800921.1|950790_950964_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466778.1|951003_951303_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_031862463.1|951439_953338_+	glucosaminidase domain-containing protein	NA	A0A0F6N4K6	Staphylococcus_phage	98.7	0.0e+00
WP_031865755.1|953350_954589_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	99.0	1.1e-208
WP_000398868.1|954594_954990_+	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_000351119.1|955045_955321_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_001141517.1|955307_956720_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_001035620.1|956779_957337_-	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001788502.1|957711_957864_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|957934_958045_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|958046_958232_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000274029.1|959061_959376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|959740_960781_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267236.1|960794_961862_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|962115_962199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|962246_963095_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|963107_963935_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|963961_965281_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|965364_966282_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|966411_966795_+	YutD family protein	NA	NA	NA	NA	NA
WP_031793518.1|967000_968320_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	1042835	1094849	2900381	protease,bacteriocin,tRNA	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|1042835_1043825_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1044118_1044514_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|1044884_1045604_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|1045724_1046711_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|1046758_1048567_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|1049026_1049833_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|1049855_1050221_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|1050324_1050918_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|1051103_1051451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1051467_1052103_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1052119_1052929_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669920.1|1052925_1053780_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1053800_1055186_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1055195_1057040_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1057317_1058088_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1058284_1059370_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|1059711_1061280_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|1061424_1062183_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1062376_1062886_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154223.1|1062998_1064189_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|1064166_1065342_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1065774_1067259_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1067239_1067500_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049950.1|1067499_1069062_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1069363_1070167_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|1070385_1072710_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1072726_1074085_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1074223_1075735_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1076221_1076791_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1077000_1077219_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|1077299_1078286_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1078484_1078661_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1078675_1079278_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001792055.1|1080193_1080295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1080304_1080577_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870829.1|1080620_1082585_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|1082587_1082908_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|1082904_1083546_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_001795266.1|1083633_1083924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1084064_1084202_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766008.1|1084290_1084647_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1085134_1086094_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1086139_1086271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1086334_1086550_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|1086714_1087266_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1087317_1088256_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190622.1|1088437_1089799_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526694.1|1089785_1091459_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|1091445_1092249_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|1092241_1093063_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|1093300_1093630_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|1093667_1094849_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	1114887	1123360	2900381		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861573.1|1114887_1115370_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010413.1|1115356_1116481_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1116484_1117189_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1117188_1117452_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1117453_1118125_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1118117_1120307_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1120285_1121770_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1121762_1122791_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1122793_1123360_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	1564714	1651793	2900381	portal,tRNA,protease,plate,integrase,head,holin,capsid,terminase,tail	Staphylococcus_phage(71.43%)	105	1600991:1601019	1646187:1646215
WP_000858779.1|1564714_1566007_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000525078.1|1566328_1569022_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049921.1|1569045_1570017_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361540.1|1570003_1571206_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_031785931.1|1571210_1572353_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1572596_1572914_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1573249_1573930_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154683.1|1574001_1574589_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1574578_1575154_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389524.1|1575167_1576412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000253232.1|1576418_1577717_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776312.1|1577726_1578791_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269921.1|1578816_1579983_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789522.1|1580368_1580569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1580777_1581227_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1581318_1582278_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1582279_1583005_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1583007_1583580_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1584010_1584283_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161745.1|1584453_1585452_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1585468_1586779_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_031785932.1|1587000_1588176_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001792202.1|1588432_1588624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795818.1|1588704_1588857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1588887_1589547_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681757.1|1589623_1590592_+	asparaginase	NA	NA	NA	NA	NA
WP_001174258.1|1590706_1591693_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001792205.1|1591853_1591970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069291.1|1592094_1593555_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902099.1|1593707_1595087_-	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
WP_001163801.1|1595076_1596030_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1596137_1596386_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1596491_1597037_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000913227.1|1597438_1598395_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001557351.1|1598535_1598790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476354.1|1598865_1599762_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476865.1|1599819_1600725_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1600814_1601000_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1600991:1601019	attL	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_000528632.1|1601275_1601833_-	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
WP_020444681.1|1602487_1603942_-	N-acetylmuramoyl-L-alanine amidase	NA	B7T0L1	Staphylococcus_virus	98.8	1.0e-285
WP_000339141.1|1603952_1604255_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000466784.1|1604390_1604690_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1604735_1604900_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1604892_1605282_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_020444680.1|1605281_1606748_-|plate	phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	99.6	3.1e-274
WP_000429552.1|1606747_1608658_-	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|1608673_1608964_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384462.1|1608963_1610547_-|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_020444679.1|1610555_1611380_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	1.2e-158
WP_031773902.1|1611379_1617580_-|tail	phage tail tape measure protein	tail	A0A2I6PEB6	Staphylococcus_phage	99.6	0.0e+00
WP_000438833.1|1617593_1617752_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_031785933.1|1617802_1618144_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	2.5e-54
WP_031773900.1|1618201_1618657_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	98.7	3.1e-76
WP_000807542.1|1618748_1619390_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	99.1	5.0e-120
WP_001636966.1|1619424_1619820_-	DUF3168 domain-containing protein	NA	R4WAV1	Staphylococcus_phage	99.2	4.4e-66
WP_000110019.1|1619820_1620222_-	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	100.0	8.1e-68
WP_000395499.1|1620218_1620551_-	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
WP_000050973.1|1620562_1620841_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1620909_1622073_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_031773898.1|1622084_1622858_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	98.8	7.8e-136
WP_031773897.1|1622841_1624080_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	99.5	1.7e-233
WP_031773892.1|1624084_1625776_-|terminase	terminase large subunit	terminase	Q9B0E3	Staphylococcus_virus	99.6	0.0e+00
WP_000778933.1|1625765_1626071_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160683.1|1626192_1626507_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
WP_000513703.1|1626663_1627101_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_001795330.1|1627113_1628481_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	100.0	4.6e-264
WP_000665203.1|1628461_1628752_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|1628885_1628990_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_020444670.1|1629092_1631540_-	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_000265258.1|1631591_1631792_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595260.1|1631859_1632012_-	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_000592210.1|1632008_1632395_-	hypothetical protein	NA	A0EWY4	Staphylococcus_phage	100.0	5.2e-64
WP_000195803.1|1632391_1632598_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282073.1|1632594_1632840_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	1.1e-35
WP_001066447.1|1632876_1633413_-	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_000714403.1|1633405_1633576_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001065097.1|1633562_1633817_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_075344958.1|1633831_1634080_-	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	93.9	1.3e-39
WP_000022736.1|1634079_1634334_-	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_000113974.1|1634333_1634735_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164630.1|1634734_1634920_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
WP_075344960.1|1634932_1636885_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.5	0.0e+00
WP_000645042.1|1636953_1637511_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762547.1|1637536_1638703_-	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	100.0	8.3e-222
WP_031785938.1|1638699_1639062_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	98.3	9.2e-55
WP_000175001.1|1639076_1639400_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	99.1	1.7e-52
WP_001285954.1|1639478_1639640_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1639652_1639916_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1639940_1640156_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1640210_1640576_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1640544_1640790_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1640845_1641055_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1641044_1641188_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148544.1|1641216_1641993_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|1642006_1642243_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1642394_1642709_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|1642721_1643183_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825948.1|1643200_1643785_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001013104.1|1644014_1644161_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1644157_1644772_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_020444721.1|1644897_1646103_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	1.7e-222
WP_033862636.1|1646184_1648173_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	1.9e-109
1646187:1646215	attR	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_001557355.1|1648165_1649092_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987774.1|1649335_1651087_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_000064078.1|1651067_1651793_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 8
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	1786751	1795794	2900381	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1786751_1787270_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1787291_1789565_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1789767_1792047_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1792321_1792582_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1792600_1793740_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1793762_1794788_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1794789_1795794_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	1925747	1983450	2900381	protease,tRNA	Staphylococcus_phage(95.24%)	53	NA	NA
WP_001050568.1|1925747_1932308_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1932633_1932945_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1932966_1935384_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1935671_1936853_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1936962_1937916_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1937912_1938476_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1938598_1939000_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1939571_1940399_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1940401_1940521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1940631_1941633_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1941754_1942219_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1942231_1943413_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1943423_1944056_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1944062_1945106_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1945586_1947089_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1947611_1947926_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1947925_1949218_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1949304_1950159_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1950434_1950659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1950857_1951328_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1951440_1951884_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1951870_1952314_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1952609_1953245_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1953684_1954398_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1954657_1954960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1955215_1955581_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1955577_1955931_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1957927_1958761_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1958972_1959881_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1960002_1961199_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1961570_1963163_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1963540_1964287_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1964291_1964765_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1964830_1965088_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1965084_1966086_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1966090_1967569_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1967727_1968183_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1968486_1969137_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1969217_1970213_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1970287_1970914_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1970954_1971296_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1971396_1971969_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1973323_1973419_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1973541_1973643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1974718_1975948_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1975940_1977497_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1977660_1977795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011447030.1|1978678_1978786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1978734_1979454_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1979574_1980294_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1980351_1981074_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1981198_1981906_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1982868_1983450_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 10
NZ_CP018766	Staphylococcus aureus subsp. aureus strain UCI62 chromosome, complete genome	2900381	2092837	2176292	2900381	portal,protease,integrase,capsid,head,holin,terminase,tail	Staphylococcus_phage(90.54%)	106	2142615:2142632	2167432:2167449
WP_000827746.1|2092837_2094004_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2094034_2094361_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2094652_2094826_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2094806_2095409_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2095679_2096501_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2096493_2097963_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2098146_2099223_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2099242_2100037_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2100108_2100216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2100226_2101789_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2101993_2103091_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2103459_2104020_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2104072_2105002_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2105194_2105368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076724929.1|2105419_2106799_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2106918_2107947_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2108216_2108618_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2109190_2109364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2109814_2110855_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2110911_2111754_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2111750_2112308_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2112367_2112892_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2113012_2113576_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2113641_2114382_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2114381_2115254_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2115250_2115931_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2115931_2116828_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2116824_2117205_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2117462_2117639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2117881_2117980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068540.1|2118179_2119466_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2119744_2120035_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|2120045_2121479_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2122436_2122616_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2122933_2123194_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2123246_2123597_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|2124279_2124729_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920042.1|2125804_2126296_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000861027.1|2126486_2127242_-	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	99.6	4.5e-152
WP_000611512.1|2127253_2127508_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2127559_2127667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2127719_2127896_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_025174055.1|2128098_2128872_-	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	4.0e-148
WP_000340977.1|2129292_2129667_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2129722_2130010_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2130055_2130208_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582152.1|2130200_2133983_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_000567396.1|2133998_2135483_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_031785875.1|2135479_2140009_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
WP_001549167.1|2140065_2140203_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2140253_2140604_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2140653_2140878_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|2140919_2141564_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2141564_2141972_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|2141968_2142373_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2142369_2142732_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2142615:2142632	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2142715_2143000_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2142989_2143274_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_031785876.1|2143293_2144439_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.8e-214
WP_000642728.1|2144462_2145200_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2145183_2146371_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2146386_2148048_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2148044_2148389_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2148518_2148818_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2149049_2149466_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|2149493_2149694_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|2149693_2149843_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|2149839_2150046_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282077.1|2150042_2150288_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000185693.1|2150324_2150861_-	dUTP diphosphatase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|2150857_2151103_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178985.1|2151117_2151366_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	95.1	2.8e-39
WP_000111491.1|2151362_2151620_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|2151619_2151991_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401969.1|2152003_2152408_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2152416_2152635_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2152641_2153535_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2153564_2154035_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_064135358.1|2154035_2154653_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000180600.1|2154733_2155654_-	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_000700554.1|2155655_2157599_-	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2157607_2157871_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2157879_2158140_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2158144_2158447_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2158541_2158703_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2158699_2159023_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2159077_2159458_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|2159444_2159642_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148605.1|2159657_2160410_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128909.1|2160460_2160790_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001025404.1|2160778_2160994_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2161009_2161273_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001031454.1|2161406_2162120_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2162135_2163068_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2163073_2163415_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000694772.1|2163618_2163801_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_001558608.1|2163899_2164883_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000427213.1|2164893_2165136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000857180.1|2165198_2166236_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000595392.1|2167354_2168371_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2167432:2167449	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791411.1|2168392_2169448_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2169883_2171107_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2171550_2172858_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2173397_2175014_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2175089_2175374_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2175548_2176292_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NZ_CP018767	Staphylococcus aureus subsp. aureus strain UCI62 plasmid pUCI62, complete sequence	26856	16823	24320	26856	transposase	Staphylococcus_phage(42.86%)	9	NA	NA
WP_000690637.1|16823_17402_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001105991.1|17858_18533_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001079938.1|18701_19274_-	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_001096887.1|19549_20344_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_000627289.1|20436_20967_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001105960.1|21739_22414_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000505741.1|22443_22647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000369394.1|22660_23398_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000793446.1|23390_24320_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
