The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	4618056	1192366	1199627	4618056		Escherichia_phage(42.86%)	9	NA	NA
WP_000444508.1|1192366_1193617_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
WP_076726407.1|1194412_1194766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058331234.1|1195198_1195612_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	39.5	8.4e-20
WP_058331233.1|1195628_1196357_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.9	4.1e-62
WP_000158843.1|1196548_1197091_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1197239_1197617_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_076728165.1|1197689_1198508_-	cytolethal distending toxin subunit B family protein	NA	A5LH53	Enterobacteria_phage	48.5	1.5e-60
WP_058331232.1|1199005_1199170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|1199387_1199627_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 2
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	4618056	1833934	1934257	4618056	holin,tail,terminase,portal,transposase,protease,tRNA	Salmonella_phage(25.37%)	106	NA	NA
WP_000984498.1|1833934_1834816_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001091237.1|1835009_1837058_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|1837077_1837764_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001518229.1|1837861_1838359_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_001207293.1|1838487_1839771_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_156010608.1|1839739_1842373_+	MCE family protein	NA	NA	NA	NA	NA
WP_076728194.1|1842450_1843890_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131167.1|1844007_1844244_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457838.1|1844354_1844546_+	YebW family protein	NA	NA	NA	NA	NA
WP_024798206.1|1844564_1845215_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
WP_001134853.1|1845438_1845603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076726688.1|1845887_1846610_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_076726691.1|1848015_1848492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076726692.1|1849062_1850280_-|transposase	IS4 family transposase	transposase	S5FM71	Shigella_phage	60.7	5.5e-136
WP_076726694.1|1850418_1851102_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	73.4	3.1e-88
WP_000722368.1|1855307_1855661_-	YebY family protein	NA	NA	NA	NA	NA
WP_017441953.1|1855677_1856553_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|1856553_1856928_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|1857065_1857296_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000100257.1|1857403_1858060_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_058331778.1|1858083_1858782_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	41.6	1.6e-07
WP_076726696.1|1858816_1860868_-	oligopeptidase B	NA	NA	NA	NA	NA
WP_000024707.1|1861080_1861740_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_001042123.1|1861833_1862187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001579458.1|1862254_1862545_-	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
WP_076726697.1|1862675_1863854_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_000800494.1|1863953_1864595_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_076726700.1|1864632_1866444_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_000301711.1|1866678_1868154_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
WP_001056719.1|1868495_1869365_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000091156.1|1869488_1870931_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_000448398.1|1871003_1871975_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_001184030.1|1872091_1873411_-	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
WP_000939597.1|1873426_1874371_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_000203023.1|1874449_1875205_+	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
WP_000571508.1|1875201_1875987_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_000568502.1|1876065_1877076_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.9	2.4e-07
WP_000580335.1|1877084_1877696_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_188317864.1|1878055_1878748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000716739.1|1878956_1879556_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA	NA
WP_000022509.1|1879557_1880079_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
WP_000907242.1|1880115_1880856_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000653693.1|1880885_1881338_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_001258629.1|1881440_1883213_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_023197261.1|1883537_1884104_+	hydrolase	NA	NA	NA	NA	NA
WP_076726704.1|1884426_1885098_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	4.5e-79
WP_000394200.1|1886360_1886780_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
WP_076728199.1|1886951_1887050_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	85.7	5.2e-05
WP_140439314.1|1887289_1887415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076726705.1|1887467_1888703_-|tail	tail fiber domain-containing protein	tail	Q5G8V6	Enterobacteria_phage	60.2	8.4e-124
WP_058116489.1|1888712_1889672_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	98.4	2.6e-181
WP_076726708.1|1889680_1892893_-	host specificity protein J	NA	O64335	Escherichia_phage	84.4	0.0e+00
WP_076726710.1|1892947_1893553_-|tail	tail assembly protein	tail	K7PGY0	Enterobacteria_phage	97.5	2.9e-101
WP_076726712.1|1893596_1893938_-	hypothetical protein	NA	K7PLP0	Enterobacteria_phage	94.7	1.5e-54
WP_076726714.1|1893967_1894678_-	C40 family peptidase	NA	K7P6F5	Enterobacteria_phage	91.9	8.5e-137
WP_076726716.1|1894679_1895435_-|tail	phage minor tail protein L	tail	K7PGX3	Enterobacteria_phage	85.7	1.6e-130
WP_048216155.1|1895431_1895779_-|tail	phage tail protein	tail	K7PJT2	Enterobacteria_phage	69.6	3.0e-39
WP_076726718.1|1895782_1898299_-|tail	phage tail tape measure protein	tail	K7PKR0	Enterobacteria_phage	70.2	0.0e+00
WP_076726720.1|1898276_1898597_-|tail	phage tail assembly protein T	tail	K7PHE1	Enterobacteria_phage	69.5	6.1e-34
WP_076726722.1|1898605_1899013_-|tail	phage minor tail protein G	tail	K7PM17	Enterobacteria_phage	58.6	2.9e-25
WP_076726724.1|1899049_1899787_-	Ig-like domain-containing protein	NA	O64327	Escherichia_phage	66.9	1.8e-89
WP_008784478.1|1899794_1900193_-|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	62.8	4.0e-43
WP_076726726.1|1900189_1900744_-|tail	phage tail protein	tail	K7P7A8	Enterobacteria_phage	76.7	3.1e-62
WP_076726727.1|1900756_1901032_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	60.4	1.5e-25
WP_008784475.1|1901024_1901351_-	DUF2190 family protein	NA	K7PJY3	Enterobacterial_phage	60.2	1.1e-30
WP_155553807.1|1901442_1903485_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	K7PKX4	Enterobacterial_phage	84.9	0.0e+00
WP_076726731.1|1903411_1904920_-|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	86.7	1.4e-258
WP_001082414.1|1904916_1905132_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	82.9	1.5e-25
WP_076726733.1|1905128_1907231_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	86.3	0.0e+00
WP_044700360.1|1907230_1907719_-	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	94.4	8.9e-77
WP_188317865.1|1907905_1908406_-	hypothetical protein	NA	K7PKT0	Enterobacteria_phage	49.4	9.9e-15
WP_076726736.1|1908467_1908659_-	hypothetical protein	NA	Q8W634	Enterobacteria_phage	50.0	2.6e-08
WP_076726738.1|1908692_1909232_-	DUF2514 domain-containing protein	NA	A0A193GYI0	Enterobacter_phage	28.2	1.1e-06
WP_076726739.1|1909228_1909846_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	80.4	2.2e-93
WP_000250465.1|1909845_1910127_-|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	51.1	8.2e-19
WP_023171055.1|1910113_1910500_-|holin	phage holin family protein	holin	A0A192Y8P2	Salmonella_phage	92.2	8.9e-56
WP_000578420.1|1910650_1911574_+	hypothetical protein	NA	A0A1B5FPA3	Escherichia_phage	56.4	2.1e-42
WP_023171057.1|1911680_1912511_-	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	43.3	5.0e-56
WP_076728202.1|1912541_1913531_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	98.5	2.6e-192
WP_024150661.1|1913538_1914399_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.3	9.2e-162
WP_057515278.1|1914415_1914805_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	87.6	3.2e-61
WP_076726741.1|1914801_1915122_-	Rrf2 family transcriptional regulator	NA	S5FXP5	Shigella_phage	56.6	7.4e-24
WP_076726743.1|1915118_1916912_-	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	56.9	1.7e-218
WP_076726744.1|1916904_1917780_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	66.8	4.3e-114
WP_023219701.1|1917779_1918262_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	99.4	5.5e-87
WP_076726746.1|1918263_1919223_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.3	3.5e-117
WP_072050186.1|1919212_1919392_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	69.1	2.1e-15
WP_023139406.1|1919555_1920110_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	1.2e-101
WP_001749160.1|1920153_1920354_-	helix-turn-helix domain-containing protein	NA	U5P445	Shigella_phage	81.5	2.5e-22
WP_001749159.1|1920442_1921117_+	LexA family transcriptional regulator	NA	U5P0T5	Shigella_phage	86.9	1.7e-115
WP_000997190.1|1921896_1922268_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_076726747.1|1922325_1923153_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	98.2	2.7e-150
WP_057515271.1|1923289_1923829_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	99.4	7.7e-98
WP_076726749.1|1923899_1924433_+	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	91.0	1.6e-92
WP_000224239.1|1924434_1924692_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	95.3	4.5e-40
WP_078057667.1|1924702_1925551_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	44.3	6.1e-57
WP_076726751.1|1925547_1926117_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	82.0	2.4e-89
WP_076726752.1|1926155_1926392_+	excisionase family protein	NA	Q8W657	Enterobacteria_phage	91.0	1.0e-38
WP_076726754.1|1926450_1927764_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	85.8	9.6e-227
WP_076726756.1|1927742_1928516_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	80.3	5.5e-57
WP_000252975.1|1928568_1928964_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_000019609.1|1929004_1929748_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.9	5.4e-25
WP_076726758.1|1929744_1930716_+|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_001185780.1|1930951_1931698_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_000024796.1|1931717_1932287_-	VOC family protein	NA	NA	NA	NA	NA
WP_001025360.1|1932523_1934257_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.4	4.9e-85
>prophage 3
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	4618056	2003457	2010725	4618056		Morganella_phage(33.33%)	8	NA	NA
WP_001157305.1|2003457_2004888_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_076726787.1|2004961_2005657_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107437.1|2005736_2006048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080675.1|2006697_2007909_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	56.0	1.3e-108
WP_024131109.1|2008168_2008357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2008367_2008580_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_076726789.1|2009034_2010303_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	3.2e-227
WP_023200548.1|2010305_2010725_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 4
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	4618056	2097898	2108406	4618056		Enterobacteria_phage(37.5%)	10	NA	NA
WP_076726830.1|2097898_2099212_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	4.1e-52
WP_076726832.1|2099238_2100318_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.9	1.7e-16
WP_000648783.1|2100322_2101096_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_076726833.1|2101111_2102086_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_076726835.1|2102091_2102643_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000857535.1|2102643_2103522_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023659.1|2103569_2104469_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000697846.1|2104468_2105554_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_076726837.1|2105931_2106825_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	2.8e-44
WP_076726838.1|2107002_2108406_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.8e-21
>prophage 5
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	4618056	2175987	2185158	4618056	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195343.1|2175987_2178021_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.4e-54
WP_000703137.1|2178261_2178720_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_076726872.1|2178891_2179422_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2179478_2179946_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_076726874.1|2179992_2180712_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|2180708_2182394_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|2182616_2183348_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2183407_2183515_+	protein YohO	NA	NA	NA	NA	NA
WP_023225924.1|2183495_2184227_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2184210_2185158_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
