assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975385.1_ASM197538v1	NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	1	2850712-2852204	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,20	24	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP019410.1_2842578_2843340_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019410.1_2843320_2844370_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019410.1_2844366_2844846_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019410.1_2844845_2845556_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019410.1_2845574_2845886_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019410.1_2846076_2846400_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019410.1_2846450_2847056_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019410.1_2847042_2848482_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019410.1_2848491_2849400_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019410.1_2849650_2850697_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP019410.1_2852300_2852594_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP019410.1_2852593_2853514_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP019410.1_2853510_2854161_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP019410.1_2854142_2854889_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP019410.1_2854899_2855958_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|181aa|down_5|NZ_CP019410.1_2855971_2856514_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|down_6|NZ_CP019410.1_2856510_2858061_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_7|NZ_CP019410.1_2858481_2861142_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP019410.1_2861585_2862539_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP019410.1_2862626_2863361_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001975385.1_ASM197538v1	NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	2	2868729-2869917	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP019410.1_2854899_2855958_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|181aa|up_8|NZ_CP019410.1_2855971_2856514_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|up_7|NZ_CP019410.1_2856510_2858061_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|up_6|NZ_CP019410.1_2858481_2861142_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP019410.1_2861585_2862539_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019410.1_2862626_2863361_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019410.1_2863436_2865149_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019410.1_2865148_2866948_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019410.1_2867383_2867746_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019410.1_2867833_2868631_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019410.1_2870213_2870885_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019410.1_2871020_2872319_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019410.1_2872401_2874039_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019410.1_2874266_2875067_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|119aa|down_4|NZ_CP019410.1_2876099_2876456_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_5|NZ_CP019410.1_2876540_2878775_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_6|NZ_CP019410.1_2878826_2880122_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_7|NZ_CP019410.1_2880179_2882936_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_8|NZ_CP019410.1_2882979_2884122_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|447aa|down_9|NZ_CP019410.1_2884199_2885540_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_001975385.1_ASM197538v1	NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	3	3622943-3623024	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTAGGCCCGATAAGCGCAGCGCCATC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|311aa|up_9|NZ_CP019410.1_3612149_3613082_+	pfam16154, DUF4862, Domain of unknown function (DUF4862)	NA|158aa|up_8|NZ_CP019410.1_3613220_3613694_+	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|426aa|up_7|NZ_CP019410.1_3613696_3614974_+	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|329aa|up_6|NZ_CP019410.1_3614985_3615972_+	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|499aa|up_5|NZ_CP019410.1_3615975_3617472_+	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|221aa|up_4|NZ_CP019410.1_3617468_3618131_+	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|287aa|up_3|NZ_CP019410.1_3618123_3618984_+	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|232aa|up_2|NZ_CP019410.1_3618977_3619673_+	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|272aa|up_1|NZ_CP019410.1_3619833_3620649_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|652aa|up_0|NZ_CP019410.1_3620912_3622868_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|513aa|down_0|NZ_CP019410.1_3623041_3624580_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|294aa|down_1|NZ_CP019410.1_3624748_3625630_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|384aa|down_2|NZ_CP019410.1_3625701_3626853_-	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional	NA|617aa|down_3|NZ_CP019410.1_3627038_3628889_-	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|464aa|down_4|NZ_CP019410.1_3628885_3630277_-	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|203aa|down_5|NZ_CP019410.1_3630375_3630984_-	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|379aa|down_6|NZ_CP019410.1_3631081_3632218_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|121aa|down_7|NZ_CP019410.1_3632220_3632583_-	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|639aa|down_8|NZ_CP019410.1_3633116_3635033_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|383aa|down_9|NZ_CP019410.1_3635263_3636412_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
