The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	27282	70036	4100254	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	77634	136108	4100254	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	164894	225405	4100254	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	233337	286925	4100254	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	390858	448367	4100254	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	589372	650562	4100254	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590819_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622998_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638048_639482_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646244_647126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	655886	702077	4100254	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	708243	762173	4100254	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736014_736887_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737227_737446_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737485_738865_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738906_740304_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740343_741996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741999_742884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742883_743825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743903_745523_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745689_746505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746572_747142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747142_748093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749878_751144_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751301_752252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755665_756637_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756768_757293_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757252_758203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758424_760620_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760692_761121_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761222_762173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	813766	885779	4100254	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|813766_814717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|814815_815472_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|815619_818328_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|818337_819357_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|819353_820304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|820402_820891_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|820887_821571_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|821600_825056_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|825091_825952_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|826080_826998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|827135_828116_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|828175_829966_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|829962_830739_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|830748_831267_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|831379_833650_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|833861_836093_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|836393_836723_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|836739_838224_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|838234_839737_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|839733_841746_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|841763_842072_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|842068_842716_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|842733_843222_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|843243_844317_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|844316_846644_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|846659_848027_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|848023_848518_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|848563_849820_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|849822_850446_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|850520_850997_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|851033_851393_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|851581_852739_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|853051_854002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854019_854574_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854575_855010_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855006_855441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855424_856228_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856244_857060_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857056_857872_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858018_858720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858747_860706_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860788_861739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861959_862628_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862751_863858_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863870_866984_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866980_868474_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868488_869160_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869203_869698_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869838_870486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870589_872638_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872634_874647_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874672_876007_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876115_877108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877174_879259_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879283_880255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880383_881415_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881418_882570_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882740_883664_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883741_884566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884762_885779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	893413	956494	4100254	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|893413_895645_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901364_902315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902311_903031_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903151_905311_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905401_905671_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|905964_906492_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906510_907290_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907457_908474_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908546_909038_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909048_910764_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911927_912878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912874_914707_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915105_915765_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915858_916005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916113_916281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916292_916973_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917254_917971_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917985_919287_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921431_924320_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924543_925896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925924_926446_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926442_927897_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927931_928180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928285_929161_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929186_930242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930254_931046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931078_932449_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|933625_934576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934628_934850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935009_935222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935341_936460_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936965_937217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937329_938280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938276_938660_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938714_940529_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940678_941506_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941551_942532_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942737_943919_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944082_944817_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944818_947431_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950095_950506_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951787_952738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952734_953709_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953833_954745_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955021_955414_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955543_956494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	975916	1046183	4100254	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|975916_976867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976947_977859_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977919_979065_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979084_979999_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980070_980820_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980819_981749_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981992_983819_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983901_984543_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|984765_985767_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987603_988668_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989465_990374_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991861_993136_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993289_993670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993677_994550_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994855_995236_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995446_996172_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996267_997218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997322_998372_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998509_999526_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001034_1001607_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001666_1002398_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002449_1003367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004174_1007354_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007350_1008733_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009199_1009814_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010000_1012115_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013038_1013665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013661_1015416_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022112_1023288_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023330_1024281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035888_1037022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1058401	1113831	4100254	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	43	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1060206_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069116_1070052_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070101_1071982_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072048_1072393_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1078754_1081502_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1081568_1082990_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1083253_1083970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1084054_1084372_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1084412_1084826_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1084827_1085187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1085229_1086774_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1086857_1087688_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1087722_1088877_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1088919_1089792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1089908_1092197_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1093403_1093868_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1093894_1094845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1095212_1095989_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1096033_1096891_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1096912_1097929_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1098063_1099104_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1099298_1101380_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1101615_1103109_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_193427273.1|1103339_1103903_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_145926200.1|1104545_1105238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|1107393_1107996_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1108147_1109098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1109678_1110386_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1110744_1111731_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1111870_1112884_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1112880_1113831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1313908	1382395	4100254	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1313908_1314859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1315627_1316266_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1317155_1317602_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1317683_1318385_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1318385_1319153_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1319149_1320388_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1320387_1321314_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1321416_1322532_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1322547_1323498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1323851_1324433_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1324429_1325263_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1325473_1326787_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1326963_1327845_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1327864_1328716_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1328768_1329857_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1329967_1331095_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1331329_1331941_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1332039_1332990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1333211_1333589_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1333736_1334234_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1334230_1334758_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1334891_1335707_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1335719_1336901_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1336948_1337842_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1337968_1338439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1338564_1339392_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1339420_1340197_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1340193_1340469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1340483_1340948_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1340959_1341661_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1341770_1342271_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1342353_1343532_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1345159_1345495_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1345682_1347131_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1347188_1347533_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1347639_1348179_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1348271_1349222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1349320_1349728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1349960_1350392_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1350573_1350978_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1352214_1352538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1352540_1353428_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1353460_1353886_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1353957_1354311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1354550_1355057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1355095_1356427_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1356486_1357302_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1357298_1358153_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1361215_1363759_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1365125_1366880_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1366876_1368997_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1369001_1371197_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1371193_1374535_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1377337_1378288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1378353_1378533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1378649_1379405_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1379391_1380537_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1381444_1382395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1442886	1498374	4100254	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1442886_1443837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1445038_1445485_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1445477_1446953_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1446949_1447705_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1447697_1448708_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1448697_1450374_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1450686_1451019_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1451032_1451428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1451437_1451764_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1451760_1452087_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1452013_1453036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1453032_1453383_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1453430_1453859_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1453866_1455240_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1455380_1455758_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1456020_1457328_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1457388_1458219_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1458215_1458704_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1458745_1460266_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1460309_1460786_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1461589_1464187_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1464216_1465038_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1465764_1466514_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1466697_1467576_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1467673_1468390_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1468404_1468965_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1469131_1469896_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1469915_1470773_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1470769_1471969_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1472008_1473343_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1473395_1475732_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1475857_1476421_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1476429_1477521_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1477592_1478048_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1478048_1478843_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1478839_1480021_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1480007_1480613_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1480609_1481383_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1481394_1482222_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1482383_1484747_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1484814_1485534_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1485657_1486083_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1486117_1487068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1487185_1488112_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1488177_1489335_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1489315_1489783_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1489930_1490881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1490897_1491332_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1491321_1491672_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1491868_1493023_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1493019_1494192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1494239_1495133_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1495178_1495616_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1495675_1496365_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1496374_1497325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1497423_1498374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1790944	1838959	4100254	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1790944_1791895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1791993_1794594_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1794700_1795705_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1795813_1797154_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1797194_1798223_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1798418_1798964_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1798960_1799521_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1799619_1800570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1800607_1801195_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1801212_1801596_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1802955_1804248_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1804382_1805423_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1805520_1806537_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1806804_1807452_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1807577_1808336_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1808320_1809100_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1809117_1810002_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1809998_1810778_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1810882_1811482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1811770_1812523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1812641_1814042_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1814065_1814464_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1814639_1814840_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1814978_1815707_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1815840_1817256_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1817259_1818123_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1818135_1818885_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1819067_1821083_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1821064_1821733_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1822507_1823458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1823556_1824507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1824655_1824994_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1825051_1825213_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1825244_1825445_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1825710_1828284_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1828354_1830904_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1833454_1833943_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1834034_1835186_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1835239_1836061_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1836099_1837329_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1837457_1837898_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1838008_1838959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1900521	1959791	4100254	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1900521_1901472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1901596_1902406_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1902606_1903557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1904830_1906048_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1907104_1908007_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1908083_1908956_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1909086_1909455_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1909512_1910559_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1910754_1912011_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1912015_1913353_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1913502_1914459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1914561_1915494_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1915609_1915930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1915922_1916282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1916329_1917904_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1917956_1918901_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1918918_1919749_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1919741_1921376_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1921372_1922728_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1923634_1925212_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1925215_1926490_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1926587_1926962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1928677_1929811_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1929848_1930454_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1930450_1931269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1931340_1933965_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1933951_1934206_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1934272_1934854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1935157_1935418_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1935583_1936207_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1936206_1936980_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1936976_1938185_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1938210_1938684_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1938757_1939708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1939806_1940757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1940855_1942205_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1942970_1943726_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1943818_1946701_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1947023_1947449_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1947476_1948625_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1948621_1949128_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1949134_1950430_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1950488_1951775_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1951776_1952415_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1952417_1953578_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1953604_1954960_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1954963_1956034_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1956172_1956409_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1956496_1957603_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1957568_1958873_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1958891_1959791_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	1970031	2027528	4100254	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|1970031_1970982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1971080_1972031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1972230_1973316_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1973331_1974093_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1974089_1975049_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1975111_1975612_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1975644_1976388_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1976483_1976723_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1976736_1976889_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1976974_1978465_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1978556_1979495_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1979491_1979668_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1979670_1980333_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1981954_1982098_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1982094_1983069_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1983235_1984186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1984182_1985457_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1985560_1986754_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1986750_1987404_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1987400_1988837_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1988824_1989184_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1989998_1990139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1991103_1992969_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1993226_1994747_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1994834_1995485_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1996433_1997729_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1997750_1998635_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1998733_1999609_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1999598_1999955_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2000085_2001060_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2001189_2001369_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2001466_2001991_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2002001_2002838_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2002950_2003322_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2003318_2003870_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2003885_2005577_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2005625_2006306_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2006553_2007018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2007187_2008117_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2008129_2008777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2008850_2010668_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2010751_2011702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2012354_2013305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2013323_2013671_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2013699_2015139_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2015157_2015553_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2015727_2016336_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2016348_2017167_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2017118_2018093_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2018121_2019183_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2019179_2021396_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2021409_2021868_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2022025_2022370_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2022526_2023432_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2023518_2024532_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2026511_2027528_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2043078	2107447	4100254	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2043078_2044029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2044250_2045201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2045299_2046265_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2046402_2047302_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2049896_2051384_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2051394_2052591_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2052663_2053983_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2053979_2054855_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2054885_2056034_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2056051_2056366_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2056387_2057110_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2057109_2057928_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2057932_2058460_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2058465_2059722_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2060080_2061220_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2061297_2062170_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2063040_2063991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2063950_2064586_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2064945_2066268_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2066586_2067408_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2068832_2069405_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2069444_2071274_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2071236_2072295_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2072332_2072794_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2072878_2073625_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2075115_2078346_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2078412_2079744_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2079996_2080371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2080473_2081652_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2081662_2082253_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2082363_2083170_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2083195_2083990_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2084990_2085965_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2086123_2086636_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2086792_2087764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2089508_2090315_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2090311_2091613_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2091563_2092328_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2092441_2093212_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2093296_2094484_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2094556_2094931_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2095031_2096294_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2096290_2097148_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2097320_2098322_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2098773_2099724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2101239_2102439_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2102807_2103044_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2103107_2103275_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2103388_2105194_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_005013747.1|2105447_2106398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2106496_2107447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2293915	2355263	4100254	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2293915_2294866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2294982_2295702_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2295874_2296861_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2296861_2297344_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2297347_2298631_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2298627_2299566_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2299562_2301272_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2301281_2302529_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2304139_2305429_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2306566_2307325_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2308001_2308745_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2308819_2309560_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2309755_2310592_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2310642_2311413_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2311462_2312515_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2312511_2313138_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2313134_2314169_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2314347_2315364_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2315462_2316413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2319153_2320443_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2320561_2320999_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2321042_2322251_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2322397_2322862_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2322885_2323836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2324820_2325594_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2325590_2326589_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2326673_2327450_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2327605_2329210_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2329590_2330715_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2330841_2331465_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2331461_2333363_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2333411_2334206_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2334218_2335220_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2335216_2335723_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2335715_2336564_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2336661_2337204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2337247_2338198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2338353_2338680_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2338676_2338961_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2338957_2339437_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2339433_2341062_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2341058_2341403_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2341402_2344336_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2345494_2346445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2346543_2346840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2346946_2347864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2347868_2348582_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2348595_2349567_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2351286_2351667_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2351670_2352858_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2353281_2354019_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2354312_2355263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2376054	2447208	4100254	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2376054_2377005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2377557_2379183_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2379232_2380267_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2380269_2381616_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2381612_2383127_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2383117_2384128_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2384601_2385543_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2385551_2386520_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2388059_2389028_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2389205_2390195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2390241_2391000_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2391189_2391927_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2392025_2392976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2393160_2393943_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2393936_2394638_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2394877_2395480_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2396806_2397757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2397753_2399310_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2399302_2400076_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2400134_2401085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2401166_2402342_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2402355_2404413_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2404409_2405435_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2405446_2406736_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2406758_2407856_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2407852_2408743_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2408739_2410824_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2410855_2412025_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2412066_2412807_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2412806_2413577_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2413901_2414069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2414432_2415218_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2415244_2417329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2417496_2419452_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2419775_2420276_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2420374_2421901_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2422038_2422926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2422940_2423894_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2423945_2426036_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2426051_2426438_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2429131_2429935_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2431228_2432131_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2432195_2432972_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2433293_2434343_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2434466_2436137_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2436141_2436936_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2437034_2437985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2438004_2438910_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2438987_2439686_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2439845_2440790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2440799_2442287_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2442286_2443354_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2443417_2444830_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2445015_2446236_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2446257_2447208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2502410	2555828	4100254	tRNA,transposase	Planktothrix_phage(15.38%)	56	NA	NA
WP_005012067.1|2502410_2503361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2503459_2504410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930418.1|2504508_2504877_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248504.1|2504982_2505561_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930416.1|2505678_2506167_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930415.1|2506180_2507113_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
WP_019247927.1|2507150_2508038_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
WP_003819848.1|2508195_2509890_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
WP_010930413.1|2509969_2511163_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930412.1|2511300_2511744_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930411.1|2511877_2513437_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
WP_010930410.1|2513565_2514318_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
WP_010930409.1|2514339_2515032_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930408.1|2515054_2515846_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003809536.1|2515872_2516778_-	arginase family protein	NA	NA	NA	NA	NA
WP_003819839.1|2516970_2517807_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809532.1|2517898_2518921_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
WP_023853543.1|2519057_2520095_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	3.6e-35
WP_010930406.1|2520114_2521305_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_019247930.1|2521307_2521823_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.6	7.0e-16
WP_010930405.1|2521972_2522452_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930404.1|2522459_2522696_-	membrane protein	NA	NA	NA	NA	NA
WP_003809516.1|2522715_2523117_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_047122780.1|2523119_2523371_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_003809513.1|2523425_2524307_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
WP_003819827.1|2524531_2524978_+	GFA family protein	NA	NA	NA	NA	NA
WP_003809510.1|2525062_2526127_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_019247931.1|2526263_2526845_-	molybdenum cofactor biosysynthesis protein	NA	NA	NA	NA	NA
WP_010930401.1|2527079_2528210_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930400.1|2528387_2529614_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
WP_003809503.1|2529672_2530188_+	AmiS/UreI family transporter	NA	NA	NA	NA	NA
WP_010930399.1|2530210_2530537_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_010930398.1|2530570_2531761_+	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
WP_003819820.1|2531834_2532239_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2532455_2533406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2533504_2534275_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2534271_2534943_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2534939_2535581_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2535593_2536514_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2536674_2537835_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2537876_2538827_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2539491_2539692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2539814_2541509_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2541630_2541900_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2542015_2542414_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2542424_2543381_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2543517_2544063_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2544083_2546033_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2546420_2547197_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2547202_2547595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2548016_2548967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2548963_2550061_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2550092_2551043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2552824_2554066_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2554077_2554851_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2554877_2555828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2680873	2721542	4100254	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2680873_2681824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2681934_2682117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2682216_2682813_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2682996_2684088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2684587_2684998_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2685056_2685398_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2685403_2687821_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2687833_2688856_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2688930_2689290_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2689305_2689503_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2689838_2690789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2690983_2691433_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2691429_2692380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2692490_2693939_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2694053_2694335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2694438_2695389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2695633_2696347_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2696469_2696697_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2696991_2697630_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2697738_2698773_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2698769_2699720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2700135_2700660_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2700663_2700933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2701131_2702193_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2702276_2703911_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2703912_2704716_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2704744_2705704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2705707_2707222_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2707258_2708263_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2708694_2709165_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2709200_2709812_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2709842_2710466_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2710546_2712079_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2712113_2713355_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2713398_2714430_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2714426_2715596_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2715589_2716270_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2716431_2717274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2717436_2718408_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2718579_2719458_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2719480_2720551_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2720591_2721542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2777007	2849877	4100254	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2777007_2777424_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2777534_2778167_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2778195_2778639_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2778660_2779752_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2779806_2780607_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2780742_2781363_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2781502_2781976_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2783115_2784066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2784062_2791724_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2791964_2796011_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2796323_2796905_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2796901_2798200_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2798279_2799308_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2799568_2800519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2800515_2801466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2801782_2802388_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2802441_2803755_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2803829_2804300_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2804299_2805088_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2805098_2806751_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2806838_2807789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2808950_2809457_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2809453_2810218_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2810233_2810518_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2810582_2811572_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2811743_2812673_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2812644_2813331_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2813364_2813910_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2813954_2815220_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2815216_2816119_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2817300_2818245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2818339_2819857_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2819898_2821527_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2821634_2822516_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2825628_2826003_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2826027_2826366_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2826409_2828044_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2828082_2829429_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2829536_2830958_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2831027_2831612_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2831714_2832665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2832799_2833906_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2833916_2835014_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2835158_2836364_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2836370_2836892_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2836888_2837380_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2837376_2837628_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2837608_2838094_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2838229_2841691_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2841708_2842593_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2842602_2843034_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2843280_2843784_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2843861_2845262_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2845336_2846212_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2846208_2847216_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2847683_2847989_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2848079_2848670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2848860_2849877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2853020	2920880	4100254	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2853020_2853971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2854069_2855020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2855016_2855811_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2855842_2856547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2856621_2857422_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2857418_2857826_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2857822_2858464_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2858456_2860457_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2861717_2863049_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2863045_2863996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2865702_2865969_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2866676_2867015_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2871568_2872171_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2872267_2873557_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2873614_2874346_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2874342_2875146_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2875142_2876231_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2876227_2877157_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2877305_2878451_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2878472_2879423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2879753_2883575_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2883731_2884400_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2884404_2886078_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2886096_2887416_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2887420_2889736_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2889791_2891960_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2891956_2897146_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2897235_2897550_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2897777_2898023_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2898117_2898636_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2898735_2899941_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2900056_2901454_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2901570_2902149_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2902221_2903613_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2903780_2904731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2905011_2905632_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2905628_2906042_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2906038_2907082_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2907137_2907326_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2907335_2908100_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2908190_2908847_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2908938_2909697_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2909722_2911324_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2911524_2912529_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2912629_2912893_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2913010_2913787_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2914377_2915328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2915426_2916377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2918760_2919873_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2919929_2920880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	2951266	2994957	4100254	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2951266_2952217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2952337_2953234_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2955511_2957737_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2957901_2958990_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2958946_2959600_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2959647_2960445_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2960976_2961927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2962001_2963156_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2963212_2964163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2964261_2964567_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2964595_2965030_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2965031_2966276_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2966272_2966983_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2966997_2967909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2968271_2968676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2968672_2969131_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2969137_2970046_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2970042_2970909_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2970895_2971723_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2971733_2972861_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2973938_2975177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2975218_2976481_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2976487_2977240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2977291_2977477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2977752_2978217_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2978248_2978908_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2979052_2981161_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2981157_2982108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2982211_2982832_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2982923_2983676_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2984810_2985935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2985980_2986349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2986590_2987541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2988576_2989119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989504_2990455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2990451_2991417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2991486_2992323_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2992835_2993945_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2994006_2994957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	3374903	3428644	4100254	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3374903_3375854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3376258_3376903_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3376927_3377512_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3377612_3378230_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3378232_3379948_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3379944_3380253_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3380269_3380887_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3380931_3381234_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3381334_3382189_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3382376_3382601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3382770_3383043_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3383460_3383868_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3384237_3385032_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3385132_3386368_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3386436_3387453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3387464_3388841_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3388837_3390034_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3390030_3391569_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3391565_3392825_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3394765_3395716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3396482_3397577_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3397569_3398904_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3398857_3399541_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3399566_3400730_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3400726_3401728_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3401727_3402600_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3402596_3403346_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3403342_3404134_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3404130_3405270_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3405545_3406331_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3406364_3407147_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3407150_3407540_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3408679_3409543_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3409578_3410667_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3410663_3411614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3411967_3414946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3415872_3416751_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3418699_3419650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3419646_3420114_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3420156_3420927_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3420947_3421748_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3421758_3423168_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3423262_3424048_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3424287_3425304_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3425411_3425804_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3425941_3426622_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3426626_3427598_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3427693_3428644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	3434799	3494099	4100254	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3434799_3436563_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3436674_3437553_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3437665_3438481_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3438484_3438736_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3438820_3439837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3440167_3440389_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3442749_3443667_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3444164_3445373_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3445452_3447024_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3447141_3448077_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3448265_3449210_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3449777_3455495_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3455500_3456628_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3456683_3457310_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3457581_3458598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3458693_3459404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3459400_3460390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3460485_3462117_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3462119_3462857_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3463012_3463885_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3464153_3465374_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3465370_3466030_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3466101_3466734_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3466763_3467282_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3467292_3468402_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3468448_3469303_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3469304_3470207_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3471429_3472380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3474136_3475126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3475122_3475281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3475301_3476090_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3476086_3477118_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3477136_3477700_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3477755_3479276_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3479539_3480244_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3480251_3480989_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3481094_3481469_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3481511_3482801_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3482797_3483967_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3483963_3484803_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3484862_3485798_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3485810_3486761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3486859_3487822_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3487853_3488213_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3488337_3489240_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3489241_3491014_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3491048_3491825_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3493148_3494099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	3509037	3568159	4100254	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3509037_3509988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3510116_3511250_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3511293_3512199_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3512201_3513902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3513898_3514819_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3514826_3515804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3515862_3516897_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3518871_3519108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3519234_3520098_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3520186_3521008_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3521087_3521825_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3521821_3522814_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3522927_3523590_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3523634_3524783_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3527106_3528057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3528430_3529381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069140.1|3529455_3530397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530495_3531446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3531742_3532240_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3532282_3534058_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534065_3534932_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3534938_3535673_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3536842_3537637_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3537926_3538517_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3538550_3539879_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3539953_3541099_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3541210_3542209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3542171_3542606_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3544122_3545007_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545003_3546209_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3546205_3547066_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3547178_3548969_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549009_3549675_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3549675_3549984_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3550149_3551436_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3552869_3553820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3555771_3556986_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557091_3558081_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558077_3558686_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3558698_3559328_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3559324_3559945_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3559976_3560768_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3561619_3562075_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3562093_3563020_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563073_3564360_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3565290_3566163_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3566159_3567110_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3567208_3568159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011168	Bordetella pertussis strain C958 chromosome, complete genome	4100254	4022425	4075857	4100254	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4022425_4023376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4023545_4024772_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4024971_4025838_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4025830_4026793_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_077069153.1|4026893_4027844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4027942_4028893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4028991_4029942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4029938_4031432_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4031428_4034536_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4034532_4037601_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4037597_4038848_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039028_4039790_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4039822_4040473_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4040475_4041315_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4041555_4042299_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4042381_4042729_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4042826_4043669_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4043713_4044601_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4044627_4044816_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4044913_4046371_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4046357_4047884_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4047902_4048370_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4048369_4049392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4049512_4050232_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4050307_4051408_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4051409_4052600_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4052719_4053736_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054054_4054726_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4054722_4055631_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4055842_4056490_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4060341_4061418_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4061428_4062238_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4062327_4063101_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4063283_4064234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4064122_4065145_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4065134_4066289_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4066328_4067741_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4067865_4068732_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4068733_4069558_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4069554_4070316_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4070396_4071083_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4071256_4072264_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4072260_4073040_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4073097_4074360_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4074906_4075857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
