The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	27282	70036	4106400	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	77634	123122	4106400	tRNA,transposase	Planktothrix_phage(25.0%)	44	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	165943	226454	4106400	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190580_191054_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194124_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212205_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	234386	287974	4106400	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279587_279728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281475_282330_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	391907	449416	4106400	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	591470	652660	4106400	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592917_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_010929851.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	657984	704175	4106400	transposase,tail,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	710341	764271	4106400	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	815864	887877	4106400	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|815864_816815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|816913_817570_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|817717_820426_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|820435_821455_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|821451_822402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|822500_822989_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|822985_823669_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|823698_827154_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|827189_828050_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|828178_829096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|829233_830214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|830273_832064_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|832060_832837_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|832846_833365_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|833477_835748_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|835959_838191_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|838491_838821_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|838837_840322_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|840332_841835_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|841831_843844_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|843861_844170_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|844166_844814_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|844831_845320_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|845341_846415_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|846414_848742_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|848757_850125_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|850121_850616_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|850661_851918_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|851920_852544_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|852618_853095_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|853131_853491_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|853679_854837_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	895511	958592	4106400	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	978014	1048281	4106400	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986863_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989701_990766_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991563_992472_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993959_995234_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995387_995768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995775_996648_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996953_997334_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997544_998270_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012098_1014213_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037986_1039120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1060499	1117881	4106400	tRNA,holin,protease,transposase	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062304_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_077069991.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1317951	1386438	4106400	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317951_1318902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319670_1320309_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321198_1321645_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321726_1322428_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322428_1323196_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323192_1324431_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324430_1325357_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325459_1326575_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326590_1327541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327894_1328476_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328472_1329306_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329516_1330830_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331006_1331888_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331907_1332759_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332811_1333900_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334010_1335138_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335372_1335984_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336082_1337033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337254_1337632_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337779_1338277_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338273_1338801_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338934_1339750_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339762_1340944_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340991_1341885_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342011_1342482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342607_1343435_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343463_1344240_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344236_1344512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344526_1344991_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345002_1345704_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345813_1346314_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346396_1347575_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349202_1349538_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349725_1351174_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351231_1351576_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351682_1352222_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352314_1353265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353363_1353771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354003_1354435_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354616_1355021_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356257_1356581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356583_1357471_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357503_1357929_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358000_1358354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358593_1359100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359138_1360470_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360529_1361345_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361341_1362196_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365258_1367802_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369168_1370923_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370919_1373040_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373044_1375240_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375236_1378578_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381380_1382331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382396_1382576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382692_1383448_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383434_1384580_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385487_1386438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1446929	1502416	4106400	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446929_1447880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449081_1449528_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449520_1450996_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450992_1451748_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451740_1452751_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452740_1454417_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454729_1455062_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455075_1455471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455480_1455807_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455803_1456130_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1456056_1456470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457074_1457425_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457472_1457901_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457908_1459282_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459422_1459800_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460062_1461370_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461430_1462261_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462257_1462746_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462787_1464308_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464351_1464828_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465631_1468229_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468258_1469080_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469806_1470556_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470739_1471618_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471715_1472432_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472446_1473007_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473173_1473938_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473957_1474815_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474811_1476011_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476050_1477385_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477437_1479774_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479899_1480463_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480471_1481563_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481634_1482090_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482090_1482885_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482881_1484063_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484049_1484655_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484651_1485425_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485436_1486264_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486425_1488789_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488856_1489576_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489699_1490125_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490159_1491110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491227_1492154_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492219_1493377_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493357_1493825_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493972_1494923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494939_1495374_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495363_1495714_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495910_1497065_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497061_1498234_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498281_1499175_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499220_1499658_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499717_1500407_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500416_1501367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501465_1502416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1794991	1843006	4106400	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1794991_1795942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796040_1798641_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798747_1799752_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799860_1801201_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801241_1802270_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802465_1803011_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803007_1803568_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803666_1804617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804654_1805242_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805259_1805643_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807002_1808295_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808429_1809470_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809567_1810584_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810851_1811499_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811624_1812383_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812367_1813147_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813164_1814049_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814045_1814825_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1814929_1815529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815817_1816570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816688_1818089_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818112_1818511_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818686_1818887_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819025_1819754_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819887_1821303_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821306_1822170_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822182_1822932_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823114_1825130_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1825111_1825780_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826554_1827505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1827603_1828554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828702_1829041_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829098_1829260_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829291_1829492_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829757_1832331_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1832401_1834951_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837501_1837990_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838081_1839233_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839286_1840108_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840146_1841376_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841504_1841945_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1842055_1843006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1846399	1908653	4106400	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	54	NA	NA
WP_010930542.1|1846399_1849261_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1849250_1850216_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1850275_1852270_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1852368_1853319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1853315_1853690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1853951_1855160_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1855156_1857457_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1857509_1860122_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1860481_1862407_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1862403_1863300_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1863306_1864446_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1864445_1865267_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1866837_1867167_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1867549_1868806_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1868880_1869162_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1869203_1869524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1869830_1870034_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1870117_1870684_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1871029_1871230_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1871341_1871902_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1872098_1873409_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1873411_1874065_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1874169_1875474_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1875662_1878116_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1878239_1879190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1879417_1880641_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1880706_1881678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1881744_1882146_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1882159_1882963_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1882959_1883391_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1883387_1884545_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1884566_1885343_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1887555_1888224_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1888216_1888858_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1888892_1889624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1889641_1889854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1890424_1891375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1892932_1893583_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1893711_1894914_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1894991_1897028_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1897280_1897772_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1897987_1898500_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1898517_1899729_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1899766_1900177_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1900178_1900502_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1900504_1901017_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1901146_1903009_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1903018_1903360_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1903359_1903554_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1903678_1904572_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1904568_1905519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905643_1906453_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005012067.1|1906653_1907604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1907702_1908653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1936436	1977127	4106400	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1936436_1939061_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1939047_1939302_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1939368_1939950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1940253_1940514_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1940679_1941303_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1941302_1942076_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1942072_1943281_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1943306_1943780_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1943853_1944804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1944902_1945853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1945951_1947301_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1948066_1948822_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1948914_1951797_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1952119_1952545_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1952572_1953721_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1953717_1954224_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1954230_1955526_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1955584_1956871_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1956872_1957511_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1957513_1958674_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1958700_1960056_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1960059_1961130_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1961268_1961505_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1961592_1962699_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1962664_1963969_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1963987_1964887_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1965070_1966228_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1966304_1967600_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1967713_1968253_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1968530_1968743_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1968762_1970793_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1970818_1971013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1971478_1973761_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1974170_1974470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1974754_1975168_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1975127_1976078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976176_1977127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	1988331	2037727	4106400	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1988331_1989282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1989278_1990553_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1990656_1991850_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1991846_1992500_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1992496_1993933_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1993920_1994280_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1995094_1995235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1995252_1996203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1997248_1999114_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1999371_2000892_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2000979_2001630_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2002578_2003874_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2003895_2004780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2004878_2005754_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2005743_2006100_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2006230_2007205_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2007334_2007514_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2007611_2008136_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2008146_2008983_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2009095_2009467_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2009463_2010015_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2010030_2011722_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2011770_2012451_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2012698_2013163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2013332_2014262_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2014274_2014922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2014995_2016813_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2016896_2017847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2018499_2019450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2019468_2019816_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2019844_2021284_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2021302_2021698_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2021872_2022481_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2022493_2023312_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2023263_2024238_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2024266_2025328_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2025324_2027541_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2027554_2028013_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2028170_2028515_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2028671_2029577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2029663_2030677_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2032656_2033673_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2033815_2035168_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2035342_2035639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2036776_2037727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2049223	2113592	4106400	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2049223_2050174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2050395_2051346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2051444_2052410_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2052547_2053447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2056041_2057529_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2057539_2058736_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2058808_2060128_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2060124_2061000_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2061030_2062179_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2062196_2062511_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2062532_2063255_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2063254_2064073_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2064077_2064605_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2064610_2065867_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2066225_2067365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2067442_2068315_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2069185_2070136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2070095_2070731_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2071090_2072413_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2072731_2073553_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2074977_2075550_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2075589_2077419_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2077381_2078440_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2078477_2078939_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2079023_2079770_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2081260_2084491_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2084557_2085889_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2086141_2086516_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2086618_2087797_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2087807_2088398_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2088508_2089315_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2089340_2090135_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2091135_2092110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2092268_2092781_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2092937_2093909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2095653_2096460_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2096456_2097758_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2097708_2098473_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2098586_2099357_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2099441_2100629_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2100701_2101076_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2101176_2102439_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2102435_2103293_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2103465_2104467_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2104918_2105869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2107384_2108584_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2108952_2109189_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2109252_2109420_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2109533_2111339_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2111592_2112543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2112641_2113592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2300060	2361408	4106400	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2300060_2301011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2301127_2301847_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2302019_2303006_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2303006_2303489_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2303492_2304776_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2304772_2305711_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2305707_2307417_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2307426_2308674_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2310284_2311574_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2312711_2313470_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2314146_2314890_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2314964_2315705_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2315900_2316737_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2316787_2317558_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2317607_2318660_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2318656_2319283_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2319279_2320314_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2320492_2321509_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2321607_2322558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2325298_2326588_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2326706_2327144_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2327187_2328396_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2328542_2329007_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2329030_2329981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2330965_2331739_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2331735_2332734_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2332818_2333595_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2333750_2335355_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2335735_2336860_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2336986_2337610_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2337606_2339508_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2339556_2340351_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2340363_2341365_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2341361_2341868_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2341860_2342709_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2342806_2343349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2343392_2344343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2344498_2344825_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2344821_2345106_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2345102_2345582_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2345578_2347207_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2347203_2347548_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2347547_2350481_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010930208.1|2351639_2352590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2352688_2352985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2353091_2354009_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2354013_2354727_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2354740_2355712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2357431_2357812_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2357815_2359003_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2359426_2360164_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2360457_2361408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2382199	2453353	4106400	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2382199_2383150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2383702_2385328_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2385377_2386412_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2386414_2387761_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2387757_2389272_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2389262_2390273_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2390746_2391688_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2391696_2392665_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2394204_2395173_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2395350_2396340_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2396386_2397145_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2397334_2398072_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2398170_2399121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2399305_2400088_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2400081_2400783_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2401022_2401625_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2402951_2403902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2403898_2405455_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2405447_2406221_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2406279_2407230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2407311_2408487_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2408500_2410558_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2410554_2411580_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2411591_2412881_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2412903_2414001_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2413997_2414888_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2414884_2416969_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2417000_2418170_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2418211_2418952_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2418951_2419722_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2420046_2420214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2420577_2421363_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2421389_2423474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2423641_2425597_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2425920_2426421_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2426519_2428046_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2428183_2429071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2429085_2430039_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2430090_2432181_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2432196_2432583_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2435276_2436080_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2437373_2438276_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2438340_2439117_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2439438_2440488_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2440611_2442282_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2442286_2443081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2443179_2444130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2444149_2445055_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2445132_2445831_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2445990_2446935_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2446944_2448432_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2448431_2449499_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2449562_2450975_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2451160_2452381_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2452402_2453353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2537553	2588725	4106400	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2537553_2538504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2538602_2539373_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2539369_2540041_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2540037_2540679_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2540691_2541612_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2541772_2542933_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2542974_2543925_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2544589_2544790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2544912_2546607_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2546728_2546998_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2547113_2547512_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2547522_2548479_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2548615_2549161_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2549181_2551131_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2551518_2552295_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2552300_2552693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2553114_2554065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2554061_2555159_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2555190_2556141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2557922_2559164_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2559175_2559949_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559975_2560926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2561024_2561807_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561895_2563122_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2563847_2565233_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2565251_2565857_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565853_2567710_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2567706_2568507_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2568521_2569715_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569782_2570757_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570879_2572103_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2572213_2574418_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2574712_2575372_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2575379_2575586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575924_2576680_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2576695_2576857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2576950_2577466_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2577738_2578056_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2578000_2578645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2578770_2580126_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2580172_2581513_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2581614_2582247_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2582246_2584607_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2584648_2585608_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2585594_2586281_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2586277_2586610_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2586725_2587676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2587774_2588725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2687020	2727688	4106400	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2687020_2687971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688081_2688264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688363_2688960_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689143_2690235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690734_2691145_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691203_2691545_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691550_2693968_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693980_2695003_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695077_2695437_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695452_2695650_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695985_2696936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697130_2697580_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697576_2698527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698637_2700086_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700200_2700482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700585_2701536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701780_2702494_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702616_2702844_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703138_2703777_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703885_2704920_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704916_2705867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706282_2706807_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706810_2707080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707278_2708340_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708423_2710058_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710059_2710863_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710891_2711851_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711854_2713369_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713405_2714410_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2714417_2714651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2714840_2715311_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715346_2715958_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715988_2716612_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716692_2718225_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718259_2719501_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719544_2720576_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720572_2721742_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721735_2722416_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722577_2723420_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723582_2724554_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724725_2725604_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725626_2726697_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726737_2727688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2783153	2856023	4106400	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783153_2783570_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783680_2784313_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784341_2784785_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784806_2785898_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785952_2786753_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786888_2787509_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787648_2788122_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789261_2790212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790208_2797870_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798110_2802157_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802469_2803051_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803047_2804346_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804425_2805454_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805714_2806665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806661_2807612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807928_2808534_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808587_2809901_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809975_2810446_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810445_2811234_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811244_2812897_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812984_2813935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815096_2815603_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815599_2816364_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816379_2816664_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816728_2817718_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817889_2818819_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818790_2819477_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819510_2820056_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820100_2821366_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821362_2822265_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823446_2824391_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824485_2826003_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826044_2827673_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827780_2828662_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831774_2832149_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832173_2832512_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832555_2834190_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834228_2835575_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835682_2837104_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837173_2837758_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837860_2838811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838945_2840052_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840062_2841160_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841304_2842510_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842516_2843038_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843034_2843526_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843522_2843774_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843754_2844240_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844375_2847837_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847854_2848739_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848748_2849180_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849426_2849930_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850007_2851408_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851482_2852358_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852354_2853362_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853829_2854135_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854225_2854816_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855006_2856023_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2859166	2925977	4106400	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2859166_2860117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860215_2861166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861162_2861957_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861988_2862693_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862767_2863568_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863564_2863972_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863968_2864610_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864602_2866603_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867863_2869195_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869191_2870142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871848_2872115_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872822_2873161_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877714_2878317_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878413_2879703_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879760_2880492_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880488_2881292_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881288_2882377_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882373_2883303_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883451_2884597_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884618_2885569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885899_2889721_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889877_2890546_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890550_2892224_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892242_2893562_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893566_2895882_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895937_2898106_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898102_2903292_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903381_2903696_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903923_2904169_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904263_2904782_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904881_2906087_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906202_2907600_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907716_2908295_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908367_2909759_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909926_2910877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911157_2911778_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911774_2912188_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912184_2913228_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913283_2913472_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913481_2914246_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914336_2914993_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915084_2915843_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915868_2917470_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917670_2918675_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918775_2919039_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919156_2919933_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920523_2921474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923857_2924970_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925026_2925977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	2956363	3000054	4106400	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956363_2957314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957434_2958331_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960608_2962834_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962998_2964087_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964043_2964697_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964744_2965542_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966073_2967024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967098_2968253_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968309_2969260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969358_2969664_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969692_2970127_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970128_2971373_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971369_2972080_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972094_2973006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973368_2973773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973769_2974228_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974234_2975143_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975139_2976006_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975992_2976820_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976830_2977958_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979035_2980274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980315_2981578_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981584_2982337_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982388_2982574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982849_2983314_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983345_2984005_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984149_2986258_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986254_2987205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987308_2987929_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988020_2988773_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989907_2991032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991077_2991446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991687_2992638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993673_2994216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994601_2995552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995548_2996514_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996583_2997420_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997932_2999042_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999103_3000054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	3380000	3433741	4106400	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380000_3380951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381355_3382000_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382024_3382609_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382709_3383327_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383329_3385045_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385041_3385350_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385366_3385984_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386028_3386331_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386431_3387286_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387473_3387698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387867_3388140_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388557_3388965_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389334_3390129_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390229_3391465_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391533_3392550_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392561_3393938_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393934_3395131_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395127_3396666_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396662_3397922_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399862_3400813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401579_3402674_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402666_3404001_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403954_3404638_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404663_3405827_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405823_3406825_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406824_3407697_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407693_3408443_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408439_3409231_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409227_3410367_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410642_3411428_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411461_3412244_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412247_3412637_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413776_3414640_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414675_3415764_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415760_3416711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417064_3420043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420969_3421848_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423796_3424747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424743_3425211_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425253_3426024_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426044_3426845_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426855_3428265_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428359_3429145_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429384_3430401_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430508_3430901_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431038_3431719_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431723_3432695_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432790_3433741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	3439896	3499196	4106400	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439896_3441660_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441771_3442650_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442762_3443578_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443581_3443833_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443917_3444934_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445264_3445486_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447846_3448764_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449261_3450470_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450549_3452121_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452238_3453174_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453362_3454307_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454874_3460592_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460597_3461725_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461780_3462407_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462678_3463695_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463790_3464501_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464497_3465487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465582_3467214_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467216_3467954_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468109_3468982_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469250_3470471_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470467_3471127_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471198_3471831_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471860_3472379_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472389_3473499_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473545_3474400_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474401_3475304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476526_3477477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479233_3480223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480219_3480378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480398_3481187_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481183_3482215_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482233_3482797_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482852_3484373_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484636_3485341_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485348_3486086_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486191_3486566_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486608_3487898_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487894_3489064_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489060_3489900_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489959_3490895_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490907_3491858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491956_3492919_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492950_3493310_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493434_3494337_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494338_3496111_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496145_3496922_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498245_3499196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	3514134	3572207	4106400	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514134_3515085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515213_3516347_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516390_3517296_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517298_3518999_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518995_3519916_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519923_3520901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520959_3521994_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523968_3524205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524331_3525195_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525283_3526105_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526184_3526922_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526918_3527911_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528024_3528687_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528731_3529880_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532203_3533154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533494_3534445_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534543_3535494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535790_3536288_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536330_3538106_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538113_3538980_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538986_3539721_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540890_3541685_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541974_3542565_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542598_3543927_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544001_3545147_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545258_3546257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546219_3546654_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548170_3549055_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549051_3550257_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550253_3551114_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551226_3553017_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553057_3553723_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553723_3554032_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554197_3555484_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556917_3557868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559819_3561034_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561139_3562129_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562125_3562734_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562746_3563376_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563372_3563993_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564024_3564816_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565667_3566123_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566141_3567068_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567121_3568408_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569338_3570211_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570207_3571158_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571256_3572207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011170	Bordetella pertussis strain D879 chromosome, complete genome	4106400	4028571	4082003	4106400	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_014486111.1|4028571_4029522_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029691_4030918_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031117_4031984_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031976_4032939_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033039_4033990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034088_4035039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035137_4036088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036084_4037578_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037574_4040682_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040678_4043747_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043743_4044994_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045174_4045936_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045968_4046619_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046621_4047461_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047701_4048445_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048527_4048875_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048972_4049815_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049859_4050747_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050773_4050962_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051059_4052517_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052503_4054030_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054048_4054516_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054515_4055538_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055658_4056378_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056453_4057554_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057555_4058746_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058865_4059882_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060200_4060872_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060868_4061777_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061988_4062636_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066487_4067564_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067574_4068384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068473_4069247_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069429_4070380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070268_4071291_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071280_4072435_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072474_4073887_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074011_4074878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074879_4075704_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075700_4076462_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076542_4077229_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077402_4078410_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078406_4079186_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079243_4080506_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081052_4082003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
