The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	27282	70036	4101625	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	77634	136108	4101625	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	164893	225404	4101625	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	233336	286924	4101625	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	555309	614609	4101625	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	620764	674505	4101625	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	723443	763393	4101625	tRNA,protease,transposase,integrase	Pseudomonas_phage(33.33%)	28	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929969.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	773320	820938	4101625	tRNA,protease,transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775400_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779509_781636_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810052_811003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813453_815058_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817588_818539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818701_819232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819987_820938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	996798	1099191	4101625	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996798_997914_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998014_998833_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998930_999542_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999701_1001078_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001140_1001599_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001683_1002379_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002440_1002722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003284_1004037_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004081_1005158_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005154_1006105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006964_1007135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007487_1008489_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008491_1009688_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009708_1010512_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010592_1010889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012388_1013138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013159_1014032_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014060_1014840_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014873_1015671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018325_1018718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021314_1022004_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022864_1023815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026295_1027516_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027463_1028366_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029252_1030539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030577_1031951_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034556_1035105_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035246_1036722_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038714_1039503_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041059_1042070_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042113_1043040_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043911_1044862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044906_1047333_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047381_1048074_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051339_1052686_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052713_1053463_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053476_1054259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054451_1055402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055463_1056573_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057991_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058953_1059904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061867_1062818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065732_1066485_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067300_1068251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072927_1074190_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074231_1075470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076547_1077675_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081228_1082179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086294_1087245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087301_1088456_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088530_1089481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091467_1092556_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092720_1094946_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098240_1099191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	1129577	1200549	4101625	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129577_1130528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130584_1131697_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134080_1135031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135621_1136398_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136515_1136779_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136879_1137884_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138084_1139686_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139711_1140470_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140561_1141218_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141308_1142073_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142082_1142271_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142326_1143370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143366_1143780_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143776_1144397_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144677_1145628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145795_1147187_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147259_1147838_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147954_1149352_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149467_1150673_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150772_1151291_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151385_1151631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151858_1152173_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152262_1157452_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157448_1159617_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159672_1161988_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161992_1163312_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163330_1165004_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165008_1165677_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165833_1169655_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169985_1170936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170957_1172103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172251_1173181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173177_1174266_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174262_1175066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175062_1175794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175851_1177141_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177237_1177840_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182394_1182733_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183440_1183707_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185413_1186364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186360_1187692_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188952_1190953_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190945_1191587_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191583_1191991_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191987_1192788_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192862_1193567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193598_1194393_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194389_1195340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195438_1196389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196487_1196922_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197004_1199341_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199532_1200549_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	1247943	1369585	4101625	tRNA,transposase	Bacillus_virus(14.29%)	100	NA	NA
WP_010927663.1|1247943_1248894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248890_1249841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250101_1251130_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251209_1252508_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252504_1253086_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253398_1257445_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257685_1265347_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265343_1266294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267433_1267907_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268046_1268667_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268802_1269603_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269657_1270749_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270770_1271214_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271242_1271875_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271985_1272402_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272394_1273087_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273193_1273568_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273644_1274454_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274549_1275494_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275532_1276504_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276594_1277032_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277090_1277972_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278975_1279836_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279868_1281251_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281247_1282267_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282639_1283134_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283141_1283882_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283962_1285567_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285606_1286395_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287597_1288686_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289566_1290379_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290391_1290700_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290817_1292548_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292549_1293695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293824_1294493_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294614_1295082_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295217_1296600_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296596_1297721_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297717_1300354_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1300769_1301720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305466_1306078_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306300_1307761_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307857_1309450_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309803_1310061_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310062_1311403_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311498_1312188_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312200_1313631_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315355_1316177_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316187_1317759_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317787_1318765_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318791_1319595_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319591_1320386_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320393_1321629_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321621_1322056_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322805_1323756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324377_1326105_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326216_1327575_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327867_1328818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1328916_1329867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329907_1330978_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1331000_1331879_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332050_1333022_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333184_1334027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334188_1334869_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1334862_1336032_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1336028_1337060_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337103_1338345_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338379_1339912_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339992_1340616_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340646_1341258_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341293_1341764_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342195_1343200_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343236_1344751_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344754_1345714_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345742_1346546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346547_1348182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348265_1349327_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349525_1349795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349798_1350323_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1350738_1351689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351685_1352720_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352828_1353467_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353761_1353989_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354111_1354825_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355069_1356020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1356123_1356405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356519_1357968_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1358078_1359029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1359025_1359475_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1359669_1360620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360955_1361153_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361168_1361528_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361602_1362625_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362637_1365055_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1365060_1365402_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1365460_1365871_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366370_1367462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367645_1368242_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368341_1368524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368634_1369585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	1449262	1498706	4101625	tRNA,transposase	Salmonella_phage(22.22%)	44	NA	NA
WP_005013747.1|1449262_1450213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450379_1450733_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450745_1451108_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451149_1451575_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451777_1453034_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453232_1454213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454362_1455604_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455702_1456653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456661_1457357_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460178_1460778_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460788_1462954_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462977_1464762_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464761_1464851_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465545_1465818_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465817_1467884_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467880_1468831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468929_1469880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469995_1470328_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470324_1471011_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1470997_1471957_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471998_1474359_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474358_1474991_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475092_1476433_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476479_1477835_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1477960_1478605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478549_1478867_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479139_1479655_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479748_1479910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479925_1480681_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481019_1481226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481233_1481893_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482187_1484392_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484502_1485726_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485848_1486823_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486890_1488084_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488098_1488899_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488895_1490752_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490748_1491354_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491372_1492758_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493483_1494710_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494798_1495581_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_076879548.1|1495679_1496630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1496661_1497759_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1497755_1498706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	1540555	1608641	4101625	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1540555_1541044_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1541161_1541740_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1541845_1542214_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1542312_1543263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1543269_1544382_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1545068_1546271_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1546306_1546453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1546474_1549135_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1549147_1552552_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1553219_1555445_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1555491_1555818_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1555868_1556477_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1556575_1557526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1557595_1558360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1558356_1558956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1559059_1559911_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1559970_1560597_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1560593_1561544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1561642_1562755_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1562744_1563746_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1563851_1565363_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1565359_1566664_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1566775_1567336_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1567603_1568158_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1568613_1568829_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1569083_1571681_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1571677_1572865_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1573523_1574138_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1574226_1575354_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1575365_1576271_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1577163_1578114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1578295_1579048_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1579116_1579776_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1579772_1580501_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1580513_1582793_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1582817_1583021_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1583062_1583695_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1583830_1584748_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1584744_1585458_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1585695_1586466_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1586470_1587070_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1587314_1588805_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1588863_1589148_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1589285_1589441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1589713_1590640_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1590776_1591517_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1591683_1593060_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1593241_1594147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1595798_1597601_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1597727_1598369_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1598467_1599418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1599439_1600660_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1600845_1602258_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1602321_1603389_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1603388_1604876_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1604885_1605830_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1605989_1606688_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1606765_1607671_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1607690_1608641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	1644608	1700199	4101625	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1644608_1645559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1645617_1646391_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1646383_1647940_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1647936_1648887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1650213_1650816_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1651055_1651757_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1651750_1652533_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1652717_1653668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1653766_1654504_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1654693_1655452_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1655498_1656488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1656665_1657634_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1659173_1660142_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1660150_1661092_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1661565_1662576_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1662566_1664081_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1664077_1665424_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1665426_1666461_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1666510_1668136_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1668688_1669639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1669743_1670691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1670744_1672559_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1672551_1673226_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1673355_1676430_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1676443_1676743_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1677057_1677681_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1677924_1678794_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1678771_1679716_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1679801_1680728_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1680840_1681620_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1681610_1682807_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1682837_1683788_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1684009_1684699_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1684763_1685519_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1685570_1686563_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1686572_1687526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1687641_1688604_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1690005_1690434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1690430_1691381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1691674_1692412_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1692835_1694023_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1694026_1694407_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1696126_1697098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1697111_1697825_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1697829_1698747_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1698853_1699150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1699248_1700199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2020368	2068383	4101625	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2020368_2021319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2021417_2024018_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2024124_2025129_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2025237_2026578_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2026618_2027647_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2027842_2028388_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2028384_2028945_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2029043_2029994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2030031_2030619_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2030636_2031020_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2032379_2033672_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2033806_2034847_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2034944_2035961_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2036228_2036876_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2037001_2037760_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2037744_2038524_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2038541_2039426_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2039422_2040202_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2040306_2040906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2041194_2041947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2042065_2043466_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2043489_2043888_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2044063_2044264_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2044402_2045131_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2045264_2046680_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2046683_2047547_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2047559_2048309_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2048491_2050507_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2050488_2051157_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2051931_2052882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2052980_2053931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2054079_2054418_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2054475_2054637_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2054668_2054869_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2055134_2057708_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2057778_2060328_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2062878_2063367_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2063458_2064610_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2064663_2065485_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2065523_2066753_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2066881_2067322_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2067432_2068383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2129945	2189215	4101625	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2129945_2130896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2131020_2131830_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2132030_2132981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2134254_2135472_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2136528_2137431_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2137507_2138380_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2138510_2138879_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2138936_2139983_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2140178_2141435_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2141439_2142777_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2142926_2143883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2143985_2144918_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2145033_2145354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2145346_2145706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2145753_2147328_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2147380_2148325_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2148342_2149173_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2149165_2150800_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2150796_2152152_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2153058_2154636_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2154639_2155914_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2156011_2156386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2158101_2159235_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2159272_2159878_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2159874_2160693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2160764_2163389_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2163375_2163630_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2163696_2164278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2164581_2164842_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2165007_2165631_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2165630_2166404_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2166400_2167609_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2167634_2168108_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2168181_2169132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2169230_2170181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2170279_2171629_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2172394_2173150_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2173242_2176125_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2176447_2176873_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2176900_2178049_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2178045_2178552_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2178558_2179854_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2179912_2181199_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2181200_2181839_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2181841_2183002_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2183028_2184384_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2184387_2185458_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2185596_2185833_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2185920_2187027_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2186992_2188297_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2188315_2189215_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2199455	2243778	4101625	transposase	Staphylococcus_phage(25.0%)	43	NA	NA
WP_005013747.1|2199455_2200406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2200504_2201455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2201654_2202740_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2202755_2203517_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2203513_2204473_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2204535_2205036_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2205068_2205812_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2205907_2206147_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2206160_2206313_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2206398_2207889_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2207980_2208919_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2208915_2209092_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2209094_2209757_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2211378_2211522_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2211518_2212493_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2212659_2213610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2213606_2214881_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2214984_2216178_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2216174_2216828_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2216824_2218261_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2218248_2218608_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2219580_2220531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2221576_2223442_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2223699_2225220_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2225307_2225958_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2226906_2228202_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2228223_2229108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2229206_2230082_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2230071_2230428_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2230558_2231533_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2231662_2231842_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2231939_2232464_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2232474_2233311_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2233423_2233795_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2233791_2234343_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2234358_2236050_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2236098_2236779_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2237026_2237491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2237660_2238590_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2238602_2239250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2239323_2241141_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2241224_2242175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2242827_2243778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2273551	2337920	4101625	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2273551_2274502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2274723_2275674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2275772_2276738_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2276875_2277775_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2280369_2281857_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2281867_2283064_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2283136_2284456_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2284452_2285328_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2285358_2286507_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2286524_2286839_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2286860_2287583_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2287582_2288401_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2288405_2288933_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2288938_2290195_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2290553_2291693_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2291770_2292643_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2293513_2294464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2294423_2295059_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2295418_2296741_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2297059_2297881_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2299305_2299878_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2299917_2301747_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2301709_2302768_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2302805_2303267_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2303351_2304098_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2305588_2308819_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2308885_2310217_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2310469_2310844_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2310946_2312125_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2312135_2312726_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2312836_2313643_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2313668_2314463_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2315463_2316438_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2316596_2317109_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2317265_2318237_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2319981_2320788_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2320784_2322086_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2322036_2322801_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2322914_2323685_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2323769_2324957_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2325029_2325404_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2325504_2326767_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2326763_2327621_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2327793_2328795_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2329246_2330197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2331712_2332912_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2333280_2333517_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2333580_2333748_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2333861_2335667_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2335920_2336871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2336969_2337920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2502381	2557861	4101625	tRNA,transposase	Planktothrix_phage(40.0%)	50	NA	NA
WP_005012067.1|2502381_2503332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2503811_2504468_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2504482_2506150_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2506152_2506782_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2506993_2508088_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2508232_2509045_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2509048_2510752_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2510802_2511933_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2512119_2513196_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2513277_2513928_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2513942_2515346_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2515629_2516448_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2516444_2517149_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2518048_2519164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2519197_2519572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2519594_2520752_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2520764_2520998_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2521632_2524602_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2524616_2524826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2524977_2525607_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2525603_2527694_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2527717_2528398_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2528394_2528955_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2528961_2530059_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2530211_2530805_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2530801_2532094_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2532107_2532650_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2532659_2533496_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2533529_2534591_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2534632_2535685_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2535700_2536003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2536144_2537095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2537273_2538968_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2538964_2540050_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2540097_2540997_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2541007_2541652_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2542673_2545916_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2545926_2547081_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2547307_2548270_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2548368_2549319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2549417_2550368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2550377_2551067_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2551126_2551564_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2551609_2552503_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930742.1|2552652_2553603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811746.1|2553599_2554772_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2554768_2555923_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2556119_2556470_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2556459_2556894_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2556910_2557861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2603954	2670454	4101625	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2603954_2604905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2605274_2605847_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2605849_2606860_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2606852_2607353_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2607363_2607705_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2607716_2608508_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2608524_2608794_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2608816_2609605_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2609651_2610668_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2610884_2612327_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2612505_2614125_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2614245_2616066_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2616144_2617677_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2617710_2619357_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2619426_2620449_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2620466_2621600_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2621602_2622292_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2622291_2623077_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2623120_2623885_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2623923_2625345_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2625410_2626115_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2626162_2626582_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2626594_2627002_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2627185_2627896_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2628022_2628313_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2628330_2628813_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2633318_2634473_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2634778_2635795_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2636041_2636830_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2636896_2637577_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2637573_2638344_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2638442_2639393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2639448_2640366_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2640376_2641555_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2641574_2642570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2644158_2644767_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2644754_2645795_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2645812_2646775_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2646771_2647965_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2647961_2648759_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2648784_2649771_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2649789_2651829_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2652030_2652711_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2652724_2653636_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2653632_2654211_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2654349_2655255_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2655262_2658682_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2658669_2661270_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2662225_2662858_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2663251_2664010_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2664006_2665209_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2665396_2666347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2667254_2668400_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2668386_2669142_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2669258_2669438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2669503_2670454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2868793	2942118	4101625	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2868793_2870149_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2871627_2872350_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2872404_2873388_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2873517_2874468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2874464_2875367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2875454_2876213_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2876225_2877317_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2877414_2878842_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2879071_2880286_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2880331_2883202_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2885612_2886101_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2886226_2888923_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2889077_2891360_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2891533_2892157_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2892255_2893206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2893252_2893807_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2893874_2894720_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2894789_2895758_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2895757_2896621_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2899453_2903380_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2904115_2907346_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2907627_2908455_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2908488_2909184_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2909176_2910457_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2910466_2911444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2911425_2913126_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2913228_2914332_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2914362_2915118_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2915124_2916645_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2916687_2916990_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2916986_2917619_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2917697_2919563_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2919559_2920354_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2920382_2921498_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2922402_2923281_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2923280_2924105_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2924272_2925223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2925435_2928285_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2928266_2928995_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2929135_2930599_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2930595_2930967_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2930984_2932298_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2932334_2932793_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2932905_2933856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2933852_2934866_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2935005_2935992_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2936350_2937058_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937638_2938589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2938740_2939343_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2939361_2939994_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2940038_2940290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2940231_2942118_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	2953843	3004505	4101625	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	43	NA	NA
WP_005013747.1|2953843_2954794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2954892_2955843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2955869_2956334_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2957540_2959829_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2959945_2960818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2960860_2962015_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2962049_2962880_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2962963_2964508_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2964550_2964910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2964911_2965325_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2965365_2965683_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2965767_2966484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2966747_2968169_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2968235_2970983_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2971315_2972332_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2972667_2973309_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2973399_2974836_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2974993_2976067_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2976063_2977200_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2977344_2977689_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2977755_2979636_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2979685_2980621_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2980953_2981970_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2982907_2984335_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2984331_2985354_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2985343_2985817_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2985957_2986845_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2986841_2988485_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2988481_2989531_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2990319_2991336_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2991435_2992068_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2992076_2992466_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2992518_2993571_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2994434_2996141_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2996214_2996715_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2996729_2998787_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2998813_2999107_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2999208_3000156_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3000168_3001044_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3001164_3001725_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3001759_3002083_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3002518_3003256_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3003554_3004505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	3025456	3097950	4101625	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3025456_3026407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3026449_3027625_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3027846_3029637_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3029649_3031311_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3031323_3034029_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3034321_3036076_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3036072_3036699_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3036695_3037547_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3037622_3039737_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3039923_3040538_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3040683_3040935_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3041004_3042387_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3042383_3045563_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3046370_3047288_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3047339_3048071_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3048130_3048703_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3050211_3051228_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3051365_3052415_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929591.1|3052519_3053470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3053565_3054291_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3054501_3054882_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3055187_3056060_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3056067_3056448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3056601_3057876_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3059363_3060272_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3061069_3062134_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3063970_3064972_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3065194_3065836_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3065918_3067745_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3067988_3068918_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3068917_3069667_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3069738_3070653_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3070672_3071818_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3071878_3072790_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3072870_3073821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3073919_3074504_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3074538_3075528_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3075524_3076466_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3076462_3077683_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3077725_3078040_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3078231_3078591_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3078592_3080308_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3080495_3081167_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3081181_3082510_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3082506_3083406_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3083492_3084578_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3084570_3085704_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3085703_3088385_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3088755_3089337_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3089462_3090188_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3090184_3090862_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3091077_3092259_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3093031_3093214_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3093243_3094194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3094323_3094716_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3094992_3095904_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3096028_3097003_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3096999_3097950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	3111457	3164975	4101625	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3111457_3112408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3112520_3112772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3113277_3114396_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3114515_3114728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3114887_3115109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3115161_3116112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3117288_3118659_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3118691_3119483_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3119495_3120551_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3120576_3121452_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3121557_3121806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3121840_3123295_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3123291_3123813_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3123841_3125194_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3125417_3128306_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3130450_3131752_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3131766_3132483_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3132764_3133445_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3133456_3133624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3133732_3133879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3133972_3134632_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3135030_3136863_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3136859_3137810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3138973_3140689_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3140699_3141191_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3141263_3142280_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3142447_3143227_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3143245_3143773_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3144066_3144336_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3144426_3146586_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3146706_3147426_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3147422_3148373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3148513_3149731_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3149724_3150336_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3150969_3151947_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3152090_3152837_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3152858_3153305_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3154092_3156324_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3156346_3157147_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3157428_3158661_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3158771_3159761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3159791_3161180_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3162778_3163762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3163958_3164975_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	3229433	3302595	4101625	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3229433_3230384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3230380_3231400_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3231409_3234118_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3234265_3234922_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3235020_3235971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3236118_3237012_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3237211_3238906_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3238940_3239867_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3239935_3241033_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3241051_3241915_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3241926_3242709_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3242705_3243824_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3243820_3245353_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3245393_3246401_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3246545_3247268_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3247283_3248306_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3248622_3249357_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3249441_3251187_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3251183_3251936_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3251980_3252937_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3253025_3253592_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3253599_3254460_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3254489_3255218_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3255249_3255933_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3256770_3257685_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3257749_3258658_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3258748_3260173_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3260174_3261497_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3261493_3263632_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3263709_3268830_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3268930_3269239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3269308_3269866_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3269881_3271363_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3273533_3274871_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3274905_3276903_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3276920_3278969_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3279099_3279966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3280234_3281200_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3281314_3282463_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3282887_3283199_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3283232_3283493_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3283642_3284776_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3284846_3285983_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3286148_3286943_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3287005_3287449_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3287564_3288515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3288616_3289045_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3289117_3291313_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3291534_3292485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3292444_3292969_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3293100_3294072_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3294191_3296636_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3296651_3297242_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3297485_3298436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3298593_3299859_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3299892_3300990_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3301644_3302595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	3313882	3413995	4101625	terminase,tail,tRNA,protease,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3313882_3314833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3315564_3315942_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3315926_3316628_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3316771_3317464_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3317463_3318567_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3318676_3321049_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3321045_3322605_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3322629_3323427_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3323458_3324604_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3324708_3326151_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3326153_3327383_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3329520_3330471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3331600_3332158_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3332133_3332484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3332652_3333447_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3333443_3334493_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3334492_3335182_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3335268_3335766_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3335797_3337114_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3337130_3338105_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3338141_3338600_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3338599_3339280_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3339282_3339711_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3339763_3341494_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3341559_3342132_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3342112_3342799_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3343154_3343826_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3344154_3344376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3344375_3344657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3344653_3345169_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3345168_3345720_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3345698_3345941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3345945_3346758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3346757_3347021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3347061_3347259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3347239_3347656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3347660_3351617_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3351609_3351999_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3351995_3352529_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3352596_3352956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3352965_3355578_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3355603_3355894_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3355911_3356241_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3356250_3356769_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3357023_3357524_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3357531_3357954_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3357950_3358349_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3358345_3358741_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3358740_3358941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3358942_3359425_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3359487_3359739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3360413_3361364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3361792_3362395_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3362517_3362760_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3362765_3363821_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3363849_3365268_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3365270_3366548_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3366534_3367020_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3367659_3368610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3368866_3369556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3369548_3369800_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3370354_3370966_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3371037_3371244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3371495_3372446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3372544_3373618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3373785_3374580_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3374619_3375144_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3375136_3376879_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3377088_3377847_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3377849_3378557_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3378573_3379455_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3379465_3380224_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3380192_3380948_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3381017_3382436_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3382457_3383108_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3383241_3383577_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3383665_3384616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3384692_3386513_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3386517_3387591_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3387713_3388682_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3388755_3389667_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3389685_3390258_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3390338_3390887_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3390886_3392476_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3392545_3392785_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3392825_3393851_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3393916_3395098_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3395194_3395647_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3395656_3396997_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3397313_3398351_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3398732_3399092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3399175_3400117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3400191_3401142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3401435_3402530_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3402611_3403493_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3403514_3404354_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3404429_3405947_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3406043_3407144_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3407160_3407583_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3407605_3407818_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3407864_3408785_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3408967_3409717_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3409719_3410049_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3410255_3411689_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3411700_3412084_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3412145_3412946_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3413044_3413995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011173	Bordetella pertussis strain E587 chromosome, complete genome	4101625	4023796	4083986	4101625	transposase	Planktothrix_phage(28.57%)	51	NA	NA
WP_010931661.1|4023796_4024747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024916_4026143_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026342_4027209_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027201_4028164_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028264_4029215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029313_4030264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030260_4031754_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4031750_4034858_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4034854_4037923_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4037919_4039170_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039350_4040112_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040144_4040795_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4040797_4041637_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4041877_4042621_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4042703_4043051_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043148_4043991_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044035_4044923_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4044949_4045138_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045235_4046693_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4046679_4048206_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048224_4048692_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4048691_4049714_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4049834_4050554_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4050629_4051730_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4051731_4052922_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053041_4054058_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054376_4055048_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055044_4055953_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056164_4056812_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4060663_4061740_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4061750_4062560_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4062649_4063423_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4063605_4064556_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4064444_4065467_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4065456_4066611_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4066650_4068063_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4068187_4069054_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4069055_4069880_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4069876_4070638_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4070718_4071405_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4071578_4072586_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4072582_4073362_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4073419_4074682_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4075228_4076179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816030.1|4076310_4077750_+	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	2.4e-106
WP_010927255.1|4077810_4078692_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931681.1|4078688_4079504_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010931682.1|4079505_4080549_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003816037.1|4080592_4081516_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_019248557.1|4081645_4082845_-	amidohydrolase	NA	NA	NA	NA	NA
WP_005013747.1|4083035_4083986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
