The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	27282	71085	4106406	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	78683	137157	4106406	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	165943	226454	4106406	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	234386	287974	4106406	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	556359	615658	4106406	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563697_564648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569478_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_014905441.1|575332_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585084_586224_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587601_588339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588341_589973_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590068_591058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591054_591765_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610068_610290_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610620_611637_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611721_611973_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611976_612792_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612904_613783_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613894_615658_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	621813	675554	4106406	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621813_622764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622859_623831_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623835_624516_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624653_625046_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625153_626170_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626409_627195_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627289_628699_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628709_629510_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629530_630301_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630343_630811_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630807_631758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633706_634585_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635511_638490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638843_639794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639790_640879_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640914_641778_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642917_643307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643310_644093_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644126_644912_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645187_646327_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646323_647115_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647111_647861_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647857_648730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648729_649731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649727_650891_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650916_651600_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651553_652888_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652880_653975_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654741_655692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657632_658892_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658888_660427_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660423_661620_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661616_662993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663004_664021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664089_665325_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665425_666220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666589_666997_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667414_667687_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667856_668081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668268_669123_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669223_669526_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669570_670188_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670204_670513_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670509_672225_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672227_672845_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672945_673530_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673554_674199_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674603_675554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	724492	764442	4106406	transposase,tRNA,protease,integrase	Pseudomonas_phage(33.33%)	29	721740:721758	741628:741646
721740:721758	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724492_725089_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725085_725868_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725940_727032_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727311_728439_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728780_729827_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730337_733094_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733095_736047_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736062_737274_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737270_737471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737457_738408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738424_738919_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738922_739180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739723_740635_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740716_741001_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741784_742735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741628:741646	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743153_745718_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745762_747616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747948_749520_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750961_751912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751997_752738_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752964_753912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|755299_756250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756443_757259_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757391_758831_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758844_759186_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759240_760896_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761047_762058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762190_762964_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763491_764442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	774369	821987	4106406	transposase,tRNA,holin,protease	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774369_775320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775458_776211_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776485_778174_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778193_779453_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779467_780562_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780558_782622_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782697_783378_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783655_785029_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785030_786050_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786113_787085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787149_788100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788198_789041_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789040_789376_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789446_790865_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791144_792185_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792264_792516_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792626_793790_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794073_794928_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794924_795815_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795857_796769_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796795_797488_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797502_798483_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798495_800637_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800685_801654_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801644_802313_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802273_803209_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803205_804102_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804098_804821_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804811_804976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805149_805653_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805929_807045_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807187_807652_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807799_808339_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808360_809695_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809708_810014_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810438_811020_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812150_813101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813541_814447_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814502_816110_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816363_817869_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817883_818348_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818637_819588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819750_820281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820280_820592_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821036_821987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	997847	1100240	4106406	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997847_998963_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999063_999882_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999979_1000591_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000750_1002127_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002189_1002648_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002732_1003428_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003489_1003771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004333_1005086_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005130_1006207_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006203_1007154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007256_1007919_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008013_1008184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008536_1009538_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009540_1010737_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010757_1011561_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011641_1011938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011968_1012532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012572_1013430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013437_1014187_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014208_1015081_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015109_1015889_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015922_1016720_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019374_1019767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019760_1020621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020624_1021587_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022363_1023053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023913_1024864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025213_1026083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026153_1026849_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026838_1027348_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027344_1028565_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028512_1029415_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|1030301_1031588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031626_1033000_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033038_1033740_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034038_1035028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035128_1035590_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035605_1036154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036295_1037771_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037876_1038968_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038971_1039754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039763_1040552_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041677_1042112_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042108_1043119_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043162_1044089_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044375_1044744_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044960_1045911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045955_1048382_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048430_1049123_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049195_1050395_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050412_1051318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051433_1052363_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052388_1053735_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053747_1054512_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054525_1055308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055500_1056451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056512_1057622_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058134_1058971_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059097_1060006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060002_1060953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061338_1061881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062916_1063867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064108_1064477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064522_1065647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066781_1067522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067625_1068246_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068349_1069300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069296_1071405_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071549_1072209_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072240_1072705_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072980_1073166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073217_1073970_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073976_1075239_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075280_1076519_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077596_1078724_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078734_1079562_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079548_1080415_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081781_1082186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082277_1083228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083597_1084509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084523_1085234_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085230_1086475_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086476_1086911_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086939_1087245_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087343_1088294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088350_1089499_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089579_1090530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091061_1091859_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091906_1092560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092516_1093605_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093769_1095995_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098272_1099169_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099289_1100240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1130626	1201598	4106406	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130626_1131577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131633_1132746_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135129_1136080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136670_1137447_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137564_1137828_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137928_1138933_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139133_1140735_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140760_1141519_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141610_1142267_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142357_1143122_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143131_1143320_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143375_1144419_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144415_1144829_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144825_1145446_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145726_1146677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146844_1148236_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148308_1148887_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149003_1150401_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150516_1151722_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151821_1152340_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152434_1152680_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152907_1153222_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153320_1158501_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158497_1160666_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160721_1163037_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163041_1164361_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164379_1166053_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166057_1166726_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166882_1170704_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171034_1171985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172006_1173152_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173300_1174230_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174226_1175315_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175311_1176115_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176111_1176843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176900_1178190_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178286_1178889_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183443_1183782_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184489_1184756_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186462_1187413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187409_1188741_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190001_1192002_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191994_1192636_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192632_1193040_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193036_1193837_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193911_1194616_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194647_1195442_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195438_1196389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1196487_1197438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197536_1197971_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198053_1200390_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010929632.1|1200581_1201598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1248992	1329867	4106406	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248992_1249943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249939_1250890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251150_1252179_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252258_1253557_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253553_1254135_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254447_1258494_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258734_1266396_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266392_1267343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268482_1268956_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269095_1269716_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269851_1270652_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270706_1271798_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271819_1272263_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272291_1272924_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273034_1273451_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273443_1274136_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274242_1274617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274693_1275503_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275598_1276543_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276581_1277553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277643_1278081_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278139_1279021_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280024_1280885_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280917_1282300_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282296_1283316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283688_1284183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284190_1284931_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285011_1286616_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286655_1287444_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287569_1289735_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290615_1291428_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291440_1291749_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291866_1293597_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293598_1294801_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294873_1295542_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295663_1296131_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296266_1297649_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297645_1298770_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298766_1301403_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301818_1302769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306515_1307127_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307349_1308810_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308906_1310499_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310852_1311110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311111_1312452_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312547_1313237_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313249_1314680_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316404_1317226_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317236_1318808_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318836_1319814_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319840_1320644_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320640_1321435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321442_1322678_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322691_1323105_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323854_1324805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325426_1327154_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327265_1328624_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328916_1329867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1449262	1513478	4106406	transposase,tRNA,protease	Salmonella_phage(16.67%)	59	NA	NA
WP_005013747.1|1449262_1450213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450379_1450733_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450745_1451108_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451149_1451575_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451777_1453034_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453232_1454213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454362_1455604_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455702_1456653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456661_1457357_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460178_1460778_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460788_1462954_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462977_1464762_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464761_1464851_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465545_1465818_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465817_1467884_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467880_1468831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468929_1469880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469995_1470328_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470324_1471011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470997_1471957_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471989_1474359_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474358_1474991_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475092_1476433_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476479_1477835_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478125_1478362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478549_1478867_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479139_1479655_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479925_1480681_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481019_1481226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481233_1481893_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482187_1484392_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484502_1485726_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485848_1486823_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486890_1488084_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488098_1488899_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488895_1490752_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490748_1491354_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491372_1492758_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493483_1494710_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494798_1495581_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495679_1496630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496656_1497430_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497441_1498683_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1500499_1501327_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1501328_1502039_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1502035_1502635_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1502743_1503337_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1503388_1503571_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1503627_1504686_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1504685_1505672_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1505753_1506689_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1506690_1507443_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1507625_1507865_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1508054_1509284_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1509285_1509786_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1509782_1510382_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1510394_1510895_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1510894_1511953_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1511990_1513478_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1743213	1800492	4106406	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1743213_1744164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1744262_1746863_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1746969_1747974_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1748082_1749423_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1749463_1750492_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1750687_1751233_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1751229_1751790_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1751888_1752839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1752876_1753464_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1753481_1753865_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1755224_1756517_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1756651_1757692_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1757789_1758806_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1759073_1759709_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1759846_1760605_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1760589_1761369_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1761386_1762271_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1762267_1763047_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1763073_1763751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1764039_1764792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1764910_1766311_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1766334_1766733_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1766908_1767109_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1767247_1767976_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1768109_1769525_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1769528_1770392_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1770404_1771154_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1771396_1773352_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1773333_1774002_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1774776_1775727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1775875_1776214_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1776271_1776433_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1776464_1776665_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1776930_1779504_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1779574_1782124_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1784674_1785163_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1785254_1786406_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1786459_1787281_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1787319_1788549_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1788677_1789118_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1789228_1790179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1790175_1790649_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1790810_1791749_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1791750_1792959_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1793063_1793570_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1793572_1796434_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1796423_1797389_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1797448_1799443_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1799541_1800492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1821343	1884371	4106406	transposase,protease	Bacillus_virus(20.0%)	53	NA	NA
WP_010930556.1|1821343_1822648_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1822836_1825290_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1825413_1826364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1826591_1827815_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1827880_1828852_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1828918_1829320_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|1829339_1830137_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1830133_1830565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1830561_1831719_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1831740_1832517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1834729_1835398_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1835390_1836032_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1836066_1836798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1836815_1837028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1837598_1838549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1838607_1839381_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1839373_1840930_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1840926_1841877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1843203_1843806_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1844045_1844747_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1844740_1845523_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1845707_1846658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1846756_1847494_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1847683_1848442_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1848488_1849478_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1849655_1850624_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1852163_1853132_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1853140_1854082_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1854555_1855566_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1855556_1857071_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1857067_1858414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1858416_1859451_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1859500_1861126_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1861678_1862629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1862733_1863681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1863734_1865549_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1865541_1866216_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1866345_1869420_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1869433_1869733_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1870047_1870671_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1870914_1871784_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1871761_1872706_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1872791_1873718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1873830_1874610_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1874600_1875797_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1875827_1876778_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1876999_1877689_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1877753_1878509_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1878560_1879553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1879562_1880516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1880631_1881594_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1882995_1883424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1883420_1884371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	1892238	1946866	4106406	transposase,tRNA	Pandoravirus(14.29%)	46	NA	NA
WP_010929588.1|1892238_1893189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1894347_1897281_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1897280_1897625_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1897621_1899250_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1899246_1899726_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1899725_1900007_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1900003_1900330_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1900485_1901436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1901479_1902022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1902119_1902968_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1903017_1903467_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1903463_1904465_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1904477_1905272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1905320_1907222_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1907218_1907842_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1907968_1909093_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1909473_1911078_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1911233_1912010_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1912094_1913093_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1913089_1913863_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1914847_1915798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1915821_1916286_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1916432_1917641_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1917684_1918122_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1918240_1919530_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1922270_1923221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1923319_1924270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1924368_1925319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1925417_1926434_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1926612_1927647_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1927643_1928270_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1928266_1929319_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1929368_1930139_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1930189_1931026_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1931221_1931962_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1932036_1932780_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1933441_1934215_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1935352_1936642_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1938252_1939500_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1939509_1941219_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1941215_1942154_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1942150_1943434_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1943437_1943920_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1943920_1944907_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1945079_1945799_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1945915_1946866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2128051	2197703	4106406	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2128051_2130709_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2130786_2131989_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2131985_2132498_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2132620_2133058_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2133334_2134285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|2134383_2135334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2135497_2137393_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2137506_2137674_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2137737_2137974_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2138342_2139494_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2141057_2142008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2142459_2143461_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2143633_2144491_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2144487_2145750_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2145850_2146225_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2146297_2147485_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2147569_2148340_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2148453_2149218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2149168_2150470_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2150466_2151273_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2153017_2153989_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2154145_2154658_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2154816_2155791_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2156791_2157586_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2157611_2158418_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2158528_2159119_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2159129_2160308_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2160410_2160785_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2161037_2162369_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2162435_2165666_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2167156_2167903_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2167987_2168449_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2168486_2169545_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2169507_2171337_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2171376_2171949_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2173373_2174195_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2174513_2175836_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2176195_2176831_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2176790_2177741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2178611_2179484_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2179561_2180701_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2181059_2182316_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2182321_2182849_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2182853_2183672_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2183671_2184394_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2184415_2184730_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2184747_2185896_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2185926_2186802_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2186798_2188118_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2188190_2189387_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2189397_2190885_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2193479_2194379_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2194516_2195482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2195580_2196531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2196752_2197703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2209199	2258595	4106406	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2209199_2210150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2211287_2211584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2211758_2213111_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2213253_2214270_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2216249_2217263_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2217349_2218255_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2218411_2218756_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2218913_2219372_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2219385_2221602_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2221598_2222660_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2222688_2223663_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2223614_2224433_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2224445_2225054_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2225228_2225624_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2225642_2227082_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2227110_2227458_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2227476_2228427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229079_2230030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2230113_2231931_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2232004_2232652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2232664_2233594_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2233763_2234228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2234475_2235156_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2235204_2236896_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2236911_2237463_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2237459_2237831_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2237943_2238780_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2238790_2239315_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2239412_2239592_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2239721_2240696_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2240826_2241183_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2241172_2242048_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2242146_2243031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2243052_2244348_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2245296_2245947_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2246034_2247555_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2247812_2249678_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2250723_2251674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2251691_2251832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2252646_2253006_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2252993_2254430_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2254426_2255080_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2255076_2256270_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2256373_2257648_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2257644_2258595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2269799	2310490	4106406	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2269799_2270750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2270848_2271799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2271758_2272172_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2272456_2272756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2273165_2275448_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2275913_2276108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2276133_2278164_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2278183_2278396_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2278673_2279213_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2279326_2280622_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2280698_2281856_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2282039_2282939_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2282957_2284262_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2284227_2285334_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2285421_2285658_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2285796_2286867_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2286870_2288226_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2288252_2289410_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2289415_2290054_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2290055_2291351_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2291400_2292687_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2292702_2293209_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2293205_2294354_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2294381_2294807_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2295129_2298012_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2298104_2298860_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2299625_2300975_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2301073_2302024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2302122_2303073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2303146_2303620_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2303645_2304854_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2304850_2305624_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2305623_2306247_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2306412_2306673_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2306976_2307558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2307624_2307879_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2307865_2310490_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2391402	2457732	4106406	transposase	Ectocarpus_siliculosus_virus(11.11%)	54	NA	NA
WP_005012067.1|2391402_2392353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2392372_2393278_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2393355_2394054_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2394213_2395158_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2395167_2396655_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2396654_2397722_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2397785_2399198_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2399383_2400604_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2400625_2401576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811159.1|2401674_2402325_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2402442_2404245_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2405896_2406802_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2406983_2408360_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2408526_2409267_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2409403_2410330_+	YicC family protein	NA	NA	NA	NA	NA
WP_010926696.1|2410895_2411180_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2411238_2412729_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2412973_2413573_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2413577_2414348_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2414585_2415299_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2415295_2416213_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2416348_2416981_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2417022_2417226_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2417250_2419530_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2419542_2420271_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2420267_2420927_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2420995_2421748_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2421929_2422880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2423772_2424678_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994740.1|2424695_2425817_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_019248658.1|2425905_2426520_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930435.1|2427179_2428367_-	cupin	NA	NA	NA	NA	NA
WP_033446228.1|2428363_2430961_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2431215_2431431_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2431886_2432441_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2432708_2433269_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2433380_2434685_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2434681_2436193_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2436298_2437300_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2437289_2438402_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2438500_2439451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2439447_2440074_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2440133_2440985_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_033446226.1|2441151_2441688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2441684_2442449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2442518_2443469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2443567_2444176_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2444226_2444553_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2444599_2446825_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2447492_2450897_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2450909_2453570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2453773_2454976_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2455662_2456775_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2456781_2457732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2497405	2556186	4106406	transposase,tRNA	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2497405_2499355_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499742_2500519_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500524_2500917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501338_2502289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502285_2503383_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503414_2504365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506146_2507388_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507399_2508173_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508199_2509150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509629_2510286_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510300_2511968_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511970_2512600_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512811_2513906_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514050_2514863_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2514866_2516450_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2516620_2517751_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517937_2519014_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519095_2519746_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519760_2521164_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521447_2522266_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2522262_2522967_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523866_2524982_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525015_2525390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525412_2526570_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526582_2526816_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527450_2530420_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530434_2530644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530795_2531425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2531421_2533479_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533535_2534216_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534212_2534773_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534779_2535877_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536029_2536623_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536619_2537912_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537925_2538468_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538477_2539314_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539347_2540409_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540450_2541503_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541518_2541821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541962_2542913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543091_2544786_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544782_2545868_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545915_2546815_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546825_2547470_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548491_2551734_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551744_2552899_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553125_2554088_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554186_2555137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555235_2556186_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2608723	2675223	4106406	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608723_2609674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610043_2610616_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610618_2611629_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611621_2612122_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612132_2612474_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612542_2613277_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613293_2613563_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613585_2614374_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614420_2615437_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615653_2617096_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617274_2618894_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619014_2620835_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620913_2622446_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622479_2624126_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624195_2625218_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_077085736.1|2625235_2626369_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626371_2627061_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627060_2627846_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627889_2628654_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628692_2630114_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630179_2630884_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630931_2631351_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631363_2631771_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631954_2632665_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632791_2633082_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633099_2633582_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638087_2639242_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639547_2640564_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640810_2641599_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641665_2642346_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642342_2643113_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643211_2644162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644217_2645135_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645145_2646324_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646343_2647339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648927_2649536_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649523_2650564_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650581_2651544_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651540_2652734_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652730_2653528_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653553_2654540_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654558_2656598_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656799_2657480_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657493_2658405_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658401_2658980_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659118_2660024_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660031_2663451_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663438_2666039_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666994_2667627_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668020_2668779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668775_2669978_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670165_2671116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672023_2673169_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673155_2673911_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674027_2674207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674272_2675223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2837788	2978150	4106406	transposase,tRNA,holin	Bacillus_phage(14.29%)	109	NA	NA
WP_023853639.1|2837788_2838739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2838837_2839788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2839990_2840980_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2841063_2841417_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2841494_2842103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2843776_2844355_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2844379_2845333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2845372_2846290_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2846411_2847338_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2847345_2848092_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2848418_2849360_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2849586_2851284_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2851718_2853140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2853293_2854073_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2854197_2855076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2855181_2856306_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2856351_2857314_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2857306_2858161_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2858268_2858679_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2858675_2859626_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2859724_2860606_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2860683_2862063_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2862101_2862947_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2862962_2863277_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2863309_2863846_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2864018_2864594_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2864696_2865434_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2865501_2867139_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2867246_2868002_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2867989_2868952_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2869059_2869854_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2869915_2871991_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2872155_2874531_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2874611_2875967_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877445_2878168_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878222_2879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879335_2880286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880282_2881185_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881272_2882031_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882043_2883135_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883232_2884660_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884889_2886104_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886149_2889020_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891430_2891919_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892044_2894741_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894895_2897178_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2897342_2897975_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2898073_2899024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2899122_2900073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900119_2900674_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900741_2901587_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901656_2902625_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2902624_2904421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2906320_2910247_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2910982_2914213_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2914494_2915322_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2915355_2916051_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2916043_2917324_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2917333_2918311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2918292_2919993_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2920095_2921199_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2921229_2921985_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2921991_2923512_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923554_2923857_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923853_2924486_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924564_2926430_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926426_2927221_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927249_2928365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929269_2930148_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930147_2930972_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2931139_2932090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932302_2935152_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935133_2935862_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2936002_2937466_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937462_2937834_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937851_2939165_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939201_2939660_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2939772_2940723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2940719_2941733_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2941872_2942859_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2943217_2943925_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2944505_2945456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945607_2946210_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946228_2946861_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946905_2947157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947098_2948985_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2949003_2949846_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2949842_2951201_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2951421_2952216_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2952446_2953940_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2954175_2956257_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2956451_2957492_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2957626_2958643_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2958664_2959522_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2959566_2960343_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2960710_2961661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961687_2962152_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963358_2965647_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965763_2966636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966678_2967833_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967867_2968698_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968781_2970326_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970368_2970728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970729_2971143_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971183_2971501_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971585_2972302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972565_2973987_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2974053_2976801_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2977133_2978150_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	2986771	3059288	4106406	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2986771_2987788_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2988725_2990153_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2990149_2991172_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2991161_2991635_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2991775_2992663_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2992659_2994303_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2994299_2995307_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|2996137_2997154_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2997253_2997886_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2997894_2998284_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2998336_2999389_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3000252_3001959_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3002032_3002533_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3002547_3004605_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3004631_3004925_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3005026_3005974_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3005986_3006862_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3006982_3007543_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3007577_3007901_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3008336_3009074_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010929591.1|3009372_3010323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3010566_3010830_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3010903_3011185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3011201_3012062_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3012058_3012394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3012447_3013098_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3014778_3015723_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3015768_3016086_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3016088_3017027_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3017204_3017690_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3017708_3018257_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3018288_3018441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3019770_3020412_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3020566_3022915_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3022911_3023850_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3023875_3025066_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3025062_3025836_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3025865_3027059_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3027176_3028187_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3028204_3030241_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3030435_3031176_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3031274_3032225_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3032267_3033443_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3033664_3035455_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3035467_3037129_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3037141_3039847_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3040139_3041894_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3041890_3042517_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3042513_3043365_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3043494_3045555_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3045741_3046356_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3046501_3046753_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3046822_3048205_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3048201_3051381_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3052188_3053106_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3053157_3053889_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3053948_3054521_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3056029_3057046_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3057183_3058233_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3058337_3059288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	3078694	3143634	4106406	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3078694_3079645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3079743_3080328_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3080362_3081352_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3081348_3082290_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3082286_3083507_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3083549_3083864_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3084055_3084415_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3084416_3086132_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3086319_3086991_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3087005_3088334_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3088330_3089230_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3089316_3090402_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3090394_3091525_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3091527_3094209_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3094579_3095161_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3095286_3096012_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3096008_3096686_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3096901_3098083_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3098855_3099038_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3099067_3100018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3100147_3100540_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3100816_3101728_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3101852_3102827_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3102823_3103774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3103872_3104958_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3105055_3105466_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3106081_3107995_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3108130_3110743_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3110744_3111479_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3111642_3112824_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3112820_3113033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3113029_3114010_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3114055_3114883_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3115032_3116847_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3116901_3117285_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3117281_3118232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3118344_3118596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3118789_3119005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3119101_3120220_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3120339_3120552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3120711_3120933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3120985_3121936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3123112_3124483_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3124515_3125307_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3125319_3126375_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3126400_3127276_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3127381_3127630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3127664_3129119_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3129115_3129637_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3129665_3131018_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3131241_3134130_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3136274_3137576_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3137590_3138307_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3138588_3139269_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3139796_3140456_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3140854_3142687_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3142683_3143634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	3235257	3304260	4106406	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3235257_3236208_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236204_3237224_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237233_3239942_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240089_3240746_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240844_3241795_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3241942_3242836_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3243035_3244730_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244764_3245691_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245759_3246857_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246875_3247739_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247750_3248533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248529_3249648_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249644_3251177_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251217_3252225_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252369_3253092_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253107_3254130_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254446_3255181_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255265_3257011_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3257007_3257760_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257804_3258761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258849_3259416_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259423_3260284_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3260313_3261042_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3261073_3261757_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262594_3263509_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263573_3264482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264572_3265997_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3265998_3267321_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267317_3269456_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269533_3274654_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274754_3275063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275132_3275690_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275705_3277187_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3277241_3279095_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3279357_3280695_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280729_3282727_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282744_3284793_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284923_3285790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286058_3287024_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287138_3288287_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3288711_3289023_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289056_3289317_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289466_3290600_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290670_3291807_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291972_3292767_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292829_3293273_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293388_3294339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3294461_3294869_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3294941_3297137_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3297358_3298309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3298268_3298793_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3298924_3299896_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3300015_3302460_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3302475_3303066_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3303309_3304260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011182	Bordetella pertussis strain F948 chromosome, complete genome	4106406	3319706	3419819	4106406	tail,transposase,tRNA,terminase,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3319706_3320657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321388_3321766_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321750_3322452_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322595_3323288_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323287_3324391_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324500_3326873_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326869_3328429_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328453_3329251_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329282_3330428_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330532_3331975_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331977_3333207_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335344_3336295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3337424_3337982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337957_3338308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3338476_3339271_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3339267_3340317_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3340316_3341006_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3341092_3341590_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3341621_3342938_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342954_3343929_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343965_3344424_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3344423_3345104_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3345106_3345535_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3345587_3347318_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3347383_3347956_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347936_3348623_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348978_3349650_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3349978_3350200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3350199_3350481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3350477_3350993_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350992_3351544_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3351522_3351765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351769_3352582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3352581_3352845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352885_3353083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3353063_3353480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3353484_3357441_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357433_3357823_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357819_3358353_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358420_3358780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358789_3361402_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361427_3361718_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361735_3362065_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362074_3362593_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362847_3363348_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363355_3363778_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363774_3364173_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364169_3364565_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3364564_3364753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364766_3365249_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365311_3365563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3366237_3367188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367616_3368219_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368341_3368584_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368589_3369645_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369673_3371092_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371094_3372372_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3372358_3372844_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3373483_3374434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3374690_3375380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3375372_3375624_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3376178_3376790_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376861_3377068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377319_3378270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378368_3379442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379609_3380404_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380443_3380968_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380960_3382703_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382912_3383671_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383673_3384381_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384397_3385279_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385289_3386048_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3386016_3386772_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386841_3388260_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388281_3388932_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389065_3389401_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389489_3390440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390516_3392337_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392341_3393415_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393537_3394506_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394579_3395491_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395509_3396082_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396162_3396711_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396710_3398300_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398369_3398609_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398649_3399675_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399740_3400922_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401018_3401471_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401480_3402821_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3403137_3404175_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404556_3404916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404999_3405941_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3406015_3406966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407259_3408354_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3408444_3409317_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409338_3410178_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410253_3411771_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411867_3412968_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412984_3413407_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3413429_3413642_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413688_3414609_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414791_3415541_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415543_3415873_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3416160_3417513_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3417524_3417908_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417969_3418770_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418868_3419819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
