The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	27282	70036	4103696	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	77634	136108	4103696	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_010929591.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	164893	225403	4103696	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	50	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	233335	286923	4103696	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	555308	614608	4103696	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555308_556259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557582_558359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558393_560166_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560167_561070_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561194_561554_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561585_562548_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562646_563597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563609_564545_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564604_565444_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565440_566610_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566606_567896_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567938_568313_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568418_569156_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569163_569868_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570131_571652_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571707_572271_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572289_573321_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573317_574106_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574126_574285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852630.1|574281_575271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577027_577978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579200_580103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580104_580959_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581005_582115_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582125_582644_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582673_583306_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583377_584037_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584033_585254_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585522_586395_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586550_587288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587290_588922_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589017_590007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590003_590714_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590809_591826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592097_592724_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592779_593907_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593912_599630_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600197_601142_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601330_602266_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602383_603955_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604034_605243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605740_606658_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609018_609240_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609570_610587_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610671_610923_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610926_611742_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611854_612733_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612844_614608_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	620763	674504	4103696	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620763_621714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621809_622781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622785_623466_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623603_623996_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624103_625120_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625359_626145_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626239_627649_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627659_628460_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628480_629251_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629293_629761_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629757_630708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632656_633535_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634461_637440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637793_638744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638740_639829_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639864_640728_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641867_642257_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642260_643043_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643076_643862_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644137_645277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645273_646065_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646061_646811_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646807_647680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647679_648681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648677_649841_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649866_650550_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650503_651838_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651830_652925_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653691_654642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656582_657842_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657838_659377_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659373_660570_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660566_661943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661954_662971_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663039_664275_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664375_665170_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665539_665947_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666364_666637_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666806_667031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667218_668073_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668173_668476_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668520_669138_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669154_669463_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669459_671175_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671177_671795_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671895_672480_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672504_673149_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673553_674504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	723442	763392	4103696	transposase,protease,integrase,tRNA	Pseudomonas_phage(33.33%)	28	720690:720708	740578:740596
720690:720708	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723442_724039_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724035_724818_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724890_725982_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726261_727389_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727730_728777_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728924_732044_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732045_734997_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735012_736224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736407_737358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737374_737869_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737872_738130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738673_739585_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739666_739951_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740734_741685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740578:740596	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742103_744668_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744712_746566_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746898_748470_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749911_750862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750947_751688_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751914_752862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754249_755200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755393_756209_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756341_757781_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757794_758136_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758190_759846_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759997_761008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761140_761914_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762441_763392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	773319	820937	4103696	holin,protease,transposase,tRNA	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773319_774270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774408_775161_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775399_777124_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777143_778403_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778417_779512_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779508_781635_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781647_782328_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782605_783979_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783980_785000_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785063_786035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786099_787050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787148_787991_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787990_788326_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788396_789815_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790094_791135_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791214_791466_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791576_792740_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793023_793878_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793874_794765_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794807_795719_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795745_796438_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796452_797433_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797445_799587_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799635_800604_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800594_801263_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801223_802159_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802155_803052_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803048_803771_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803761_803926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804099_804603_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804879_805995_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806137_806602_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806749_807289_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807310_808645_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808658_808964_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809388_809970_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810051_811002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811100_812051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812491_813397_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813452_815057_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815313_816819_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816833_817298_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817587_818538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818700_819231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819230_819542_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819986_820937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	996797	1099190	4103696	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052712_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065731_1066484_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087300_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1129576	1200548	4103696	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152261_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182393_1182732_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183439_1183706_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185412_1186363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186359_1187691_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188951_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192861_1193566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194388_1195339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197003_1199340_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010931363.1|1199531_1200548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1217782	1274489	4103696	transposase,tRNA	Agrobacterium_phage(20.0%)	42	NA	NA
WP_005012808.1|1217782_1218733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1218831_1219782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1219884_1220469_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1220538_1221960_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1222067_1223414_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010931082.1|1223452_1225087_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1225130_1225469_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1225493_1225868_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1228980_1229862_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1229969_1231598_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1231639_1233157_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1233251_1234196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1235377_1236280_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1236276_1237542_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1237586_1238132_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1238165_1238852_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1238823_1239753_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1239924_1240914_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1240978_1241263_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1241278_1242043_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1242039_1242546_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_010929591.1|1243707_1244658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1244745_1246398_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1246408_1247197_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1247196_1247667_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1247741_1249055_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1249108_1249714_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1250030_1250981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250977_1251928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1252188_1253217_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1253296_1254595_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1254591_1255173_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1255485_1259532_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1259772_1267434_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1267430_1268381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1269520_1269994_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1270133_1270754_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1270889_1271690_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1271744_1272836_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1272857_1273301_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1273329_1273962_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1274072_1274489_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 13
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1296484	1354823	4103696	transposase	Klosneuvirus(16.67%)	46	NA	NA
WP_010930208.1|1296484_1297435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810957.1|1297750_1298218_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1298353_1299736_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1299732_1300857_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1300853_1303490_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1303905_1304856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1308600_1309212_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1309434_1310895_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1310991_1312584_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1312937_1313195_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1313196_1314537_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1314632_1315322_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1315334_1316765_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1318489_1319311_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1319321_1320893_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1320921_1321899_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1321925_1322729_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1322725_1323520_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1323527_1324763_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1324755_1325190_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1325939_1326890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1326988_1327939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1328560_1330288_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1330399_1331758_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1332050_1333001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1333041_1334112_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1334134_1335013_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1335184_1336156_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1336318_1337161_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1337322_1338003_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1337996_1339166_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1339162_1340194_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1340237_1341479_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1341513_1343046_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1343126_1343750_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1343780_1344392_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1344427_1344898_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1345329_1346334_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1346370_1347885_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1347888_1348848_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1348876_1349680_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1349681_1351316_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1351399_1352461_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1352659_1352929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1352932_1353457_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1353872_1354823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1452396	1504549	4103696	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1452396_1453347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1453513_1453867_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1453879_1454242_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1454283_1454709_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1454911_1456168_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1456366_1457347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1457496_1458738_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1458836_1459787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1459795_1460491_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1463312_1463912_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1463922_1466088_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1466111_1467896_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1467895_1467985_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1468679_1468952_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1468951_1471018_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010930363.1|1471014_1471965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1472063_1473014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1473129_1473462_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1473458_1474145_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1474131_1475091_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1475132_1477493_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1477492_1478125_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1478226_1479567_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1479613_1480969_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1481094_1481739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1481683_1482001_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1482273_1482789_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1482882_1483044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1483059_1483815_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1484153_1484360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1484367_1485027_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1485321_1487526_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1487636_1488860_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1488982_1489957_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1490024_1491218_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1491232_1492033_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1492029_1493886_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1493882_1494488_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1494506_1495892_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1496617_1497844_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1497932_1498715_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1498813_1499764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1499790_1500564_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1500575_1501817_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1503598_1504549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1548474	1616560	4103696	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1548474_1548963_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1549080_1549659_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1549764_1550133_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1550231_1551182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1551188_1552301_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1552987_1554190_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1554225_1554372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1554393_1557054_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1557066_1560471_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1561138_1563364_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1563410_1563737_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1563787_1564396_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1564494_1565445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1565514_1566279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1566275_1566875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1566978_1567830_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1567889_1568516_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1568512_1569463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1569561_1570674_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1570663_1571665_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1571770_1573282_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1573278_1574583_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1574694_1575255_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1575522_1576077_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1576532_1576748_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1577002_1579600_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1579596_1580784_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1581442_1582057_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1582145_1583273_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1583284_1584190_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585082_1586033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1586214_1586967_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1587035_1587695_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1587691_1588420_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1588432_1590712_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1590736_1590940_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1590981_1591614_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1591749_1592667_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1592663_1593377_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1593614_1594385_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1594389_1594989_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1595233_1596724_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1596782_1597067_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1597204_1597360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1597632_1598559_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1598695_1599436_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1599602_1600979_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1601160_1602066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1603717_1605520_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1605646_1606288_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1606386_1607337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1607358_1608579_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1608764_1610177_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1610240_1611308_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1611307_1612795_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1612804_1613749_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1613908_1614607_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1614684_1615590_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1615609_1616560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1652509	1708100	4103696	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1652509_1653460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1653518_1654292_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1654284_1655841_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1655837_1656788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1658114_1658717_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1658956_1659658_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1659651_1660434_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1660618_1661569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1661667_1662405_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1662594_1663353_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1663399_1664389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1664566_1665535_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1667074_1668043_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1668051_1668993_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1669466_1670477_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1670467_1671982_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1671978_1673325_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1673327_1674362_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1674411_1676037_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1676589_1677540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1677644_1678592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1678645_1680460_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1680452_1681127_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1681256_1684331_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1684344_1684644_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1684958_1685582_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1685825_1686695_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1686672_1687617_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1687702_1688629_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1688741_1689521_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1689511_1690708_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1690738_1691689_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1691910_1692600_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019249354.1|1692664_1693420_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1693471_1694464_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1694473_1695427_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1695542_1696505_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1697906_1698335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1698331_1699282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1699575_1700313_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1700736_1701924_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1701927_1702308_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1704027_1704999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1705012_1705726_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1705730_1706648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1706754_1707051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1707149_1708100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	1941913	2011565	4103696	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1941913_1944571_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1944648_1945851_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1945847_1946360_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1946482_1946920_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1947196_1948147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1948245_1949196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1949449_1951255_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1951368_1951536_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1951599_1951836_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1952204_1953404_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1954919_1955870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1956321_1957323_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1957495_1958353_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1958349_1959612_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1959712_1960087_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1960159_1961347_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1961431_1962202_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1962315_1963080_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1963030_1964332_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1964328_1965135_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1966879_1967851_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1968007_1968520_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1968678_1969653_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1970653_1971448_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1971473_1972280_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1972390_1972981_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1972991_1974170_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1974272_1974647_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1974899_1976231_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1976297_1979528_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1981018_1981765_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1981849_1982311_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1982348_1983407_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1983369_1985199_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1985238_1985811_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1987235_1988057_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1988375_1989698_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1990057_1990693_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1990652_1991603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1992473_1993346_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1993423_1994563_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1994921_1996178_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1996183_1996711_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1996715_1997534_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1997533_1998256_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1998277_1998592_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1998609_1999758_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1999788_2000664_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2000660_2001980_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2002052_2003249_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2003259_2004747_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2007341_2008241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2008378_2009344_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2009442_2010393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2010614_2011565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2023061	2153073	4103696	protease,transposase,tRNA	Klosneuvirus(18.75%)	117	NA	NA
WP_005013747.1|2023061_2024012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2025149_2025446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2025620_2026973_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2027115_2028132_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2030111_2031125_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2031211_2032117_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2032273_2032618_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2032775_2033234_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2033247_2035464_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2035460_2036522_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2036550_2037525_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2037476_2038295_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2038307_2038916_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2039090_2039486_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2039504_2040944_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2040972_2041320_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2041338_2042289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2042941_2043892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2043975_2045793_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2045866_2046514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2046526_2047456_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2047625_2048090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2048337_2049018_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2049066_2050758_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2050773_2051325_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2051321_2051693_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2051805_2052642_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2052652_2053177_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2053274_2053454_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2053583_2054558_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2054688_2055045_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2055034_2055910_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2056008_2056893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2056914_2058210_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2059158_2059809_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2059896_2061417_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2061674_2063540_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930769.1|2065459_2065819_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2065806_2067243_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2067239_2067893_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2067889_2069083_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2069186_2070461_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2070457_2071408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2071574_2072549_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2072545_2072689_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2074310_2074973_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2074975_2075152_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2075148_2076087_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2076178_2077669_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2077754_2077907_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2077920_2078160_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2078255_2078999_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2079031_2079532_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2079594_2080554_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2080550_2081312_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2081327_2082413_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2082612_2083563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2083661_2084612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2084571_2084985_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2085269_2085569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2085978_2088261_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2088726_2088921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2088946_2090977_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2090996_2091209_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2091486_2092026_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2092139_2093435_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2093511_2094669_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2094852_2095752_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2095770_2097075_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2097040_2098147_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2098234_2098471_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2098609_2099680_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2099683_2101039_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2101065_2102226_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2102228_2102867_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2102868_2104155_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2104213_2105509_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2105515_2106022_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2106018_2107167_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2107194_2107620_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2107942_2110825_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2110917_2111673_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2112438_2113788_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2113886_2114837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2114910_2115384_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2115409_2116618_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2116614_2117388_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2117387_2118011_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2118176_2118437_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2118740_2119322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2119388_2119643_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2119629_2122254_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2122325_2123144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2123140_2123746_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2123783_2124917_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2126632_2127007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2127104_2128379_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2128382_2129960_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2130866_2132222_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2132218_2133853_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2133845_2134676_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2134693_2135638_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2135690_2137265_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2137312_2137672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2137664_2137985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2138100_2139033_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2139135_2140092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2140241_2141579_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2141583_2142840_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2143035_2144082_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2144139_2144508_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2144638_2145511_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2145587_2146490_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2147546_2148764_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2150037_2150988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2151188_2151998_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2152122_2153073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2204322	2261601	4103696	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2204322_2205273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2205371_2207366_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2207425_2208391_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2208380_2211242_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2211244_2211751_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2211855_2213064_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2213065_2214004_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2214165_2214639_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2214635_2215586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2215696_2216137_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2216265_2217495_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2217533_2218355_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2218408_2219560_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2219651_2220140_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2222690_2225240_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2225310_2227884_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2228149_2228350_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2228381_2228543_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2228600_2228939_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2229087_2230038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2230812_2231481_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2231462_2233478_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2233660_2234410_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2234422_2235286_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2235289_2236705_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2236838_2237567_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2237705_2237906_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2238081_2238480_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2238503_2239904_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2240022_2240775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2241063_2241663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2241767_2242547_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2242543_2243428_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2243445_2244225_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2244209_2244968_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2245093_2245741_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2246008_2247025_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2247122_2248163_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2248297_2249590_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2250949_2251333_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2251350_2251938_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_041337087.1|2251975_2252926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2253024_2253585_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2253581_2254127_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2254322_2255351_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2255391_2256732_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2256840_2257845_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2257951_2260552_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2260650_2261601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2539256	2577846	4103696	protease,transposase	Planktothrix_phage(14.29%)	35	NA	NA
WP_005012808.1|2539256_2540207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2540385_2542080_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542076_2543162_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543209_2544109_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544119_2544764_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545785_2549028_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549038_2550193_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2550419_2551382_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2551480_2552431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2552529_2553480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2553489_2554179_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554238_2554676_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554721_2555615_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555662_2556835_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556831_2557986_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558182_2558533_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2558522_2558957_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_005015810.1|2558973_2559924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560071_2560539_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2560519_2561677_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561742_2562669_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562786_2563737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2563771_2564197_-	NfeD family protein	NA	NA	NA	NA	NA
WP_010930359.1|2564320_2565040_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2565107_2567471_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2567632_2568460_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2568471_2569245_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2569241_2569847_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2569833_2571015_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2571011_2571806_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2571806_2572262_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2572333_2573425_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2573433_2573997_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2574122_2576459_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2576511_2577846_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 21
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2606017	2672517	4103696	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606017_2606968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607337_2607910_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607912_2608923_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608915_2609416_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2609426_2609768_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2609779_2610571_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610587_2610857_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610879_2611668_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611714_2612731_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612947_2614390_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614568_2616188_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616308_2618129_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618207_2619740_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2619773_2621420_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621489_2622512_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622529_2623663_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623665_2624355_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624354_2625140_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625183_2625948_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625986_2627408_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627473_2628178_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628225_2628645_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628657_2629065_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629248_2629959_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630085_2630376_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630393_2630876_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635381_2636536_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636841_2637858_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638104_2638893_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638959_2639640_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639636_2640407_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_077070284.1|2640505_2641456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641511_2642429_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2642439_2643618_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643637_2644633_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646221_2646830_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646817_2647858_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647875_2648838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648834_2650028_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650024_2650822_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650847_2651834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651852_2653892_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654093_2654774_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654787_2655699_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655695_2656274_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2656412_2657318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657325_2660745_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660732_2663333_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664288_2664921_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665314_2666073_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666069_2667272_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667459_2668410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669317_2670463_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670449_2671205_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671321_2671501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2671566_2672517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2871905	2945233	4103696	protease,transposase,tRNA	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2871905_2873261_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874739_2875462_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875516_2876500_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876629_2877580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877576_2878479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878566_2879325_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879337_2880429_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880526_2881954_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882183_2883398_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883443_2886314_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888724_2889213_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889338_2892035_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892189_2894472_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2894648_2895272_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2895370_2896321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896367_2896922_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896989_2897835_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897904_2898873_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2898872_2899736_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2902568_2906495_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907230_2910461_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910742_2911570_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911603_2912299_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912291_2913572_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913581_2914559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914540_2916241_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916343_2917447_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917477_2918233_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918239_2919760_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919802_2920105_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920101_2920734_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920812_2922678_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922674_2923469_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923497_2924613_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925517_2926396_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926395_2927220_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927387_2928338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928550_2931400_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931381_2932110_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932250_2933714_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933710_2934082_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934099_2935413_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935449_2935908_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936020_2936971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936967_2937981_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938120_2939107_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939465_2940173_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940753_2941704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941855_2942458_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942476_2943109_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943153_2943405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943346_2945233_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	2956958	3006571	4103696	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	41	NA	NA
WP_005013747.1|2956958_2957909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957935_2958400_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959606_2961895_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962011_2962884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962926_2964081_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964115_2964946_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965029_2966574_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966616_2966976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966977_2967391_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967431_2967749_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967833_2968550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968813_2970235_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|2973381_2974398_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974733_2975375_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975465_2976902_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977059_2978133_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978129_2979266_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2979410_2979755_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979821_2981702_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981751_2982687_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983019_2984036_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984973_2986401_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986397_2987420_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987409_2987883_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988023_2988911_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988907_2990551_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2990547_2991597_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992385_2993402_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993501_2994134_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994142_2994532_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994584_2995637_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996500_2998207_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998280_2998781_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998795_3000853_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000879_3001173_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001274_3002222_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002234_3003110_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003230_3003791_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003825_3004149_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004584_3005322_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005620_3006571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	3027522	3100016	4103696	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3027522_3028473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028515_3029691_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029912_3031703_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031715_3033377_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033389_3036095_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036387_3038142_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038138_3038765_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038761_3039613_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3039688_3041803_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041989_3042604_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042749_3043001_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043070_3044453_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044449_3047629_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3048436_3049354_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049405_3050137_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050196_3050769_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052277_3053294_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3053431_3054481_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054585_3055536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055631_3056357_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056567_3056948_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057253_3058126_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058133_3058514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058667_3059942_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3061429_3062338_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063135_3064200_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066036_3067038_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067260_3067902_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067984_3069811_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070054_3070984_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070983_3071733_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071804_3072719_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072738_3073884_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073944_3074856_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074936_3075887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075985_3076570_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076604_3077594_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077590_3078532_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078528_3079749_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079791_3080106_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080297_3080657_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080658_3082374_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082561_3083233_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083247_3084576_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084572_3085472_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085558_3086644_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3086636_3087770_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3087769_3090451_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090821_3091403_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091528_3092254_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092250_3092928_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093143_3094325_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095097_3095280_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095309_3096260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096389_3096782_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097058_3097970_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098094_3099069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099065_3100016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	3113523	3167041	4103696	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3113523_3114474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114586_3114838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115343_3116462_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116581_3116794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116953_3117175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117227_3118178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119354_3120725_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120757_3121549_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121561_3122617_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122642_3123518_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123623_3123872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123906_3125361_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125357_3125879_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125907_3127260_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127483_3130372_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132516_3133818_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3133832_3134549_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134830_3135511_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3135522_3135690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3135798_3135945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3136038_3136698_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137096_3138929_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138925_3139876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3141039_3142755_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3142765_3143257_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3143329_3144346_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3144513_3145293_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3145311_3145839_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3146132_3146402_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3146492_3148652_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3148772_3149492_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3149488_3150439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3150579_3151797_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3151790_3152402_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3153035_3154013_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3154156_3154903_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3154924_3155371_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3156158_3158390_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3158412_3159213_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3159494_3160727_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3160837_3161827_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3161857_3163246_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3164844_3165828_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3166024_3167041_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	3231499	3304661	4103696	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3231499_3232450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232446_3233466_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233475_3236184_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236331_3236988_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237086_3238037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238184_3239078_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239277_3240972_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241006_3241933_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242001_3243099_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243117_3243981_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243992_3244775_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244771_3245890_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245886_3247419_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247459_3248467_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248611_3249334_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249349_3250372_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250688_3251423_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251507_3253253_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253249_3254002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254046_3255003_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255091_3255658_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255665_3256526_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256555_3257284_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257315_3257999_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258836_3259751_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259815_3260724_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260814_3262239_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262240_3263563_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263559_3265698_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265775_3270896_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270996_3271305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271374_3271932_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271947_3273429_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3275599_3276937_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276971_3278969_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278986_3281035_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853298.1|3281165_3282032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282300_3283266_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283380_3284529_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3284953_3285265_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285298_3285559_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285708_3286842_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286912_3288049_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288214_3289009_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289071_3289515_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289630_3290581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3290682_3291111_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3291183_3293379_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293600_3294551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294510_3295035_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295166_3296138_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296257_3298702_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298717_3299308_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299551_3300502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3300659_3301925_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3301958_3303056_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3303710_3304661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	3315948	3417110	4103696	transposase,tail,terminase,protease,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3315948_3316899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317630_3318008_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317992_3318694_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318837_3319530_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319529_3320633_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320742_3323115_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323111_3324671_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324695_3325493_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325524_3326670_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326774_3328217_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328219_3329449_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331586_3332537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333666_3334224_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334199_3334550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334718_3335513_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335509_3336559_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336558_3337248_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337334_3337832_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337863_3339180_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339196_3340171_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340207_3340666_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340665_3341346_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341348_3341777_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341829_3343560_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343625_3344198_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344178_3344865_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345220_3345892_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346220_3346442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346441_3346723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346719_3347235_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347234_3347786_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347764_3348007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348011_3348824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348823_3349087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349127_3349325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349305_3349722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349726_3353683_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353675_3354065_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354061_3354595_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354662_3355022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355031_3357644_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357669_3357960_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357977_3358307_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358316_3358835_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359089_3359590_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359597_3360020_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360016_3360415_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3360411_3360807_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3360806_3361007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361008_3361491_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361553_3361805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362479_3363430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363858_3364461_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364583_3364826_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364831_3365887_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365915_3367334_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367336_3368614_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368600_3369086_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369725_3370676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370932_3371622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371614_3371866_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3372420_3373032_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373103_3373310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373561_3374512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374610_3375684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375851_3376646_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376685_3377210_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377202_3378945_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379154_3379913_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379915_3380623_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380639_3381521_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381531_3382290_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382258_3383014_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383083_3384502_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384523_3385174_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385307_3385643_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385731_3386682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386758_3388579_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388583_3389657_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389779_3390748_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390821_3391733_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391751_3392324_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392404_3392953_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392952_3394542_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394611_3394851_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394891_3395917_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395982_3397164_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397260_3397713_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397722_3399063_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3399379_3400417_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400798_3401158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401241_3402183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402257_3403208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403501_3404596_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3404677_3405559_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405580_3406420_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406495_3408013_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408109_3409210_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409226_3409649_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3409671_3409884_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409930_3410851_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411033_3411783_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411785_3412115_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3412321_3413755_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3413766_3414150_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414211_3415012_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415110_3416061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|3416159_3417110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	3703725	3836651	4103696	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	3748368:3748385	3793008:3793025
WP_005013747.1|3703725_3704676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3704672_3705308_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3705437_3706337_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3706432_3706924_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3706970_3707936_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709069_3710311_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3710424_3711441_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711475_3711952_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712094_3713003_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713116_3714229_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714329_3714815_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3714951_3716202_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716303_3716816_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3716914_3717865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3717930_3718869_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3718891_3719518_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719514_3720171_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720167_3720770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3720776_3721364_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3721544_3722114_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722184_3723504_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723610_3723802_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724053_3725343_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725497_3726493_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726577_3727252_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727248_3728199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728360_3729602_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729598_3730543_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3730661_3731612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731571_3732501_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732554_3732890_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3732934_3733699_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3733722_3734463_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3734470_3736024_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736058_3737036_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737308_3737890_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3737941_3744844_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3745290_3745422_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3745687_3745894_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3746898_3747558_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3747585_3748731_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3748368:3748385	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3748871_3749207_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3749281_3750142_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3750405_3751107_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3751276_3751672_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3751781_3752732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3752742_3753384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3753550_3753793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3753891_3754842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3754877_3755345_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3755578_3755956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3755952_3756135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3756138_3757125_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3757121_3757769_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3757826_3758354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3758390_3759575_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3759585_3759927_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3760039_3760240_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3760236_3761226_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3762712_3764683_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3764924_3765323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3765331_3766255_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3766712_3767663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3767893_3769585_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3769633_3769906_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3769902_3770274_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3770369_3770504_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3770909_3772319_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3772321_3773431_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3773525_3775979_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3776097_3776889_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3777008_3778436_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3778474_3779446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3779864_3781028_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3781115_3781961_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3783517_3784468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3785022_3785397_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3785471_3786530_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3786553_3787504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3790385_3791555_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3791655_3793263_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3793008:3793025	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3793309_3795331_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3795359_3795605_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3795618_3796809_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3797004_3797970_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3797992_3799132_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3799343_3800306_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3800429_3802454_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3802650_3804894_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3805172_3805631_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3806558_3809180_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3809243_3811871_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3812022_3813087_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3813086_3813857_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3813865_3814699_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3814711_3815491_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3815564_3816998_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3817025_3817784_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3817839_3819690_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3819783_3820260_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3820276_3821197_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3821303_3821804_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3822177_3822870_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|3823178_3824129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3824125_3827899_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3828235_3830125_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3830136_3831030_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3831133_3831931_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3831927_3832779_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3832840_3833521_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3833548_3833884_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3833884_3834844_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3834864_3835353_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3835634_3836651_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011185	Bordetella pertussis strain H637 chromosome, complete genome	4103696	4025867	4079299	4103696	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4025867_4026818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026987_4028214_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028413_4029280_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029272_4030235_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030335_4031286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031384_4032335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032433_4033384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033380_4034874_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034870_4037978_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037974_4041043_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041039_4042290_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042470_4043232_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043264_4043915_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043917_4044757_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044997_4045741_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045823_4046171_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046268_4047111_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047155_4048043_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048069_4048258_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048355_4049813_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4049799_4051326_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051344_4051812_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051811_4052834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052954_4053674_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053749_4054850_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054851_4056042_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056161_4057178_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057496_4058168_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058164_4059073_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059284_4059932_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063783_4064860_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064870_4065680_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065769_4066543_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066725_4067676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4067564_4068587_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4068576_4069731_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4069770_4071183_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071307_4072174_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072175_4073000_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4072996_4073758_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4073838_4074525_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4074698_4075706_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4075702_4076482_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4076539_4077802_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078348_4079299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
