The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	27282	70036	4107439	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	77634	136108	4107439	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	164894	219511	4107439	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	225503	287974	4107439	tRNA,transposase,protease	Bacillus_phage(25.0%)	55	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162494027.1|226471_226645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|226672_227368_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227384_228797_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228909_230340_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230381_232295_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232613_233180_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233270_234272_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	556359	615659	4107439	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563697_564648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569478_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575332_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585084_586224_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587601_588339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588341_589973_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590068_591058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591054_591765_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610621_611638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613895_615659_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	621814	675555	4107439	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621814_622765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622860_623832_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623836_624517_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624654_625047_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625154_626171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626410_627196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627290_628700_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628710_629511_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629531_630302_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630344_630812_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630808_631759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633707_634586_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635512_638491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|638844_639795_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639791_640880_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640915_641779_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642918_643308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643311_644094_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644127_644913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645188_646328_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646324_647116_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647112_647862_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647858_648731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648730_649732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649728_650892_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650917_651601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651554_652889_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652881_653976_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654742_655693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657633_658893_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658889_660428_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660424_661621_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661617_662994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663005_664022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664090_665326_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665426_666221_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666590_666998_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667415_667688_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667857_668082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668269_669124_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669224_669527_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669571_670189_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670205_670514_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670510_672226_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672228_672846_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672946_673531_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673555_674200_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674604_675555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	724493	764443	4107439	integrase,tRNA,transposase,protease	Pseudomonas_phage(33.33%)	31	721741:721759	741629:741647
721741:721759	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724493_725090_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725086_725869_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725941_727033_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727312_728440_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728781_729828_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730338_733095_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733096_736048_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736063_737275_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737271_737472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737458_738409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738923_739181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740717_741002_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741785_742736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741629:741647	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745763_747617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750789_750945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750962_751913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751998_752739_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752965_753913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755300_756251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756268_756481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756444_757260_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757392_758832_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758845_759187_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759241_760897_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761048_762059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762191_762965_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763492_764443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	774370	820939	4107439	tRNA,protease,transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774370_775321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775459_776212_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776486_778175_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778194_779454_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779468_780563_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780559_782623_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782698_783379_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783656_785030_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785031_786051_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786114_787086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787150_788101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788199_789042_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789041_789377_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789447_790866_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791145_792186_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792265_792517_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792627_793791_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794074_794929_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794925_795816_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795858_796770_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796796_797489_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797503_798484_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798496_800638_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800686_801655_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801645_802314_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802274_803210_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803206_804103_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804099_804822_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804812_804977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805150_805654_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805930_807046_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807188_807653_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807800_808340_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808361_809696_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809709_810015_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810439_811021_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811102_812053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812493_813399_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|813454_815062_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815315_816821_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816835_817300_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817589_818540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|818557_818746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818702_819233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819232_819544_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819988_820939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	868858	933967	4107439	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	56	NA	NA
WP_005012067.1|868858_869809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|869907_870858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931247.1|872230_873094_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010931246.1|873090_873990_-	TonB family protein	NA	NA	NA	NA	NA
WP_014486102.1|874027_875911_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931244.1|875982_876576_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003814955.1|876586_877957_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_023853327.1|878039_878588_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814953.1|878666_879101_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_003814952.1|879190_879640_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814951.1|879649_880996_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010931242.1|881961_883059_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|883070_884012_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931240.1|884184_884688_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_003814943.1|884968_885208_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_019248818.1|885185_886361_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_010931239.1|886490_887618_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_023853325.1|887637_889092_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_023853329.1|889099_889660_-	YggT family protein	NA	NA	NA	NA	NA
WP_010931236.1|889813_890341_-	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_003814929.1|890658_891855_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931235.1|891876_894804_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_019247415.1|895109_898172_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_003814925.1|898733_899186_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023998238.1|899387_899897_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931233.1|899965_901153_+	MFS transporter	NA	NA	NA	NA	NA
WP_033446281.1|901156_902563_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931231.1|902698_905158_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|905154_906105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931230.1|906203_906878_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931229.1|907174_908671_+	membrane protein	NA	NA	NA	NA	NA
WP_003820592.1|908787_910176_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_003820593.1|910281_910671_+	VOC family protein	NA	NA	NA	NA	NA
WP_003820594.1|910682_911375_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010931228.1|911389_912226_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931227.1|912228_913038_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931226.1|914294_914969_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853313.1|914982_915534_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_004567741.1|915592_916957_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_004567739.1|917298_918396_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010927106.1|918691_919120_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_010931224.1|919129_919522_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003820599.1|919710_920775_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931223.1|920811_921558_+	membrane protein	NA	NA	NA	NA	NA
WP_003814883.1|921645_922017_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931222.1|922086_923223_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_010931221.1|923228_924644_-	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_005012067.1|924735_925686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158516320.1|925703_925859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814877.1|925953_927183_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003820605.1|927218_927875_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814873.1|928095_929343_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003814871.1|929500_929983_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_023853315.1|930977_931541_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_047122802.1|931746_932871_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_005015810.1|933016_933967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1007253	1101290	4107439	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1007253_1008204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1008306_1008969_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1009063_1009234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1009586_1010588_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1010590_1011787_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1011807_1012611_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1012691_1012988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1013018_1013582_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1013622_1014480_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1014487_1015237_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1015258_1016131_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1016159_1016939_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1016972_1017770_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1020424_1020817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1020810_1021671_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1021674_1022637_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1023413_1024103_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1024963_1025914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1026263_1027133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1027203_1027899_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1027888_1028398_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1028394_1029615_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1029562_1030465_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1031351_1032638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1032676_1034050_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1034088_1034790_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1035088_1036078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1036178_1036640_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1036655_1037204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1037345_1038821_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1038926_1040018_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1040021_1040804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1040813_1041602_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1042727_1043162_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1043158_1044169_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1044212_1045139_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1045425_1045794_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1045846_1045993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1046010_1046961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1047005_1049432_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1049480_1050173_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1050245_1051445_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1051462_1052368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1052483_1053413_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1053438_1054785_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1054797_1055562_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1055575_1056358_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1056550_1057501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1057562_1058672_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1059184_1060021_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1060147_1061056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1061052_1062003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1062020_1062191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1062388_1062931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1063966_1064917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1065158_1065527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1065572_1066697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1067831_1068572_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1068675_1069296_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1069399_1070350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1070346_1072455_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1072599_1073259_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1073290_1073755_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1074030_1074216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1074267_1075020_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1075026_1076289_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1076330_1077569_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1078646_1079774_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1079784_1080612_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1080598_1081465_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1082831_1083236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1083327_1084278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1084295_1084460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1084647_1085559_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1085573_1086284_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1086280_1087525_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1087526_1087961_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1087989_1088295_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1088393_1089344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1089400_1090549_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1090629_1091580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1092111_1092909_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1092956_1093610_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1093566_1094655_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1094819_1097045_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1099322_1100219_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1100172_1100322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1100339_1101290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1131676	1201598	4107439	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1131676_1132627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1132683_1133796_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1136179_1137130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1137720_1138497_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1138614_1138878_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138978_1139983_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1140183_1141785_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1141810_1142569_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1142660_1143317_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1143407_1144172_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1144181_1144370_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1144425_1145469_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1145465_1145879_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1145875_1146496_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1146776_1147727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147894_1149286_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1149358_1149937_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1150053_1151451_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1151566_1152772_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1152871_1153390_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1153484_1153730_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153957_1154272_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1154370_1159551_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1159547_1161716_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1161771_1164087_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1164091_1165411_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1165429_1167103_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1167107_1167776_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167932_1171754_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1171908_1172067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1172084_1173035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1173056_1174202_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1174350_1175280_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1175276_1176365_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1176361_1177165_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1177161_1177893_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177950_1179240_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1179336_1179939_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1184492_1184831_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1185538_1185805_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1187511_1188462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1188458_1189790_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1191050_1193051_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1193043_1193685_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1193681_1194089_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1194085_1194886_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194960_1195665_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1195696_1196491_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1196487_1197438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197536_1197971_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198053_1200390_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200581_1201598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1248992	1329867	4107439	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1248992_1249943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249939_1250890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251150_1252179_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252258_1253557_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253553_1254135_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254447_1258494_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258734_1266396_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266392_1267343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268482_1268956_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269095_1269716_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269851_1270652_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270706_1271798_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271819_1272263_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272291_1272924_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273034_1273451_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273443_1274136_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274242_1274617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274693_1275503_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275598_1276543_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276581_1277553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277643_1278081_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278139_1279021_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280024_1280885_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280917_1282300_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282296_1283316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283688_1284183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284190_1284931_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285011_1286616_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286655_1287444_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287569_1289735_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290615_1291428_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291440_1291749_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291866_1293597_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293598_1294801_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294873_1295542_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295663_1296131_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296266_1297649_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297645_1298770_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298766_1301403_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301818_1302769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306515_1307127_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307349_1308810_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308906_1310499_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310852_1311110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311111_1312452_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312547_1313237_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313249_1314680_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316404_1317226_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317236_1318808_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318836_1319814_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319840_1320644_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320640_1321435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321442_1322678_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322691_1323105_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323854_1324805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325426_1327154_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327265_1328624_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1328680_1328899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328916_1329867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1449262	1502442	4107439	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1449262_1450213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1450230_1450383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450379_1450733_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450745_1451108_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451149_1451575_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451777_1453034_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453232_1454213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454362_1455604_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455702_1456653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456661_1457357_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460178_1460778_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460788_1462954_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462977_1464762_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464761_1464851_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465545_1465818_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465817_1467884_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467880_1468831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468946_1469279_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469275_1469962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469948_1470908_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470940_1473310_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473309_1473942_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474043_1475384_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475430_1476786_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477076_1477313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477500_1477818_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478090_1478606_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478876_1479632_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479970_1480177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480184_1480844_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481138_1483343_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483453_1484677_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484799_1485774_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485841_1487035_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487049_1487850_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487846_1489703_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489699_1490305_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490323_1491709_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492434_1493661_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493749_1494532_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494630_1495581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495607_1496381_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496392_1497634_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499415_1500366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1500397_1501495_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1501491_1502442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1544291	1612377	4107439	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1544291_1544780_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544897_1545476_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545581_1545950_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546048_1546999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547005_1548118_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548804_1550007_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550210_1552871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552883_1556288_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556955_1559181_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559227_1559554_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559604_1560213_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560311_1561262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561331_1562096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562092_1562629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562795_1563647_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563706_1564333_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564329_1565280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565378_1566491_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566480_1567482_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567587_1569099_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569095_1570400_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570511_1571072_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571339_1571894_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572349_1572565_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572819_1575417_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575413_1576601_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577259_1577874_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577962_1579084_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579101_1580007_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580899_1581850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582031_1582784_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582852_1583512_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583508_1584237_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584249_1586529_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586553_1586757_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586798_1587431_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587566_1588484_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588480_1589194_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589431_1590202_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590206_1590806_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591050_1592541_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592599_1592884_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593449_1594376_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594512_1595253_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595419_1596796_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596977_1597883_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599534_1601337_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601454_1602105_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602203_1603154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603175_1604396_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604581_1605994_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606057_1607125_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607124_1608612_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608621_1609566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609725_1610424_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610501_1611407_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611426_1612377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1648317	1703908	4107439	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648317_1649268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649326_1650100_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650092_1651649_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651645_1652596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653922_1654525_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654764_1655466_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655459_1656242_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656426_1657377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657475_1658213_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658402_1659161_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659207_1660197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660374_1661343_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662882_1663851_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663859_1664801_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665274_1666285_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666275_1667790_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667786_1669133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1669135_1670170_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670219_1671845_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672397_1673348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673452_1674400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674453_1676268_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676260_1676935_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677064_1680139_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680152_1680452_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680766_1681390_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1681633_1682503_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682480_1683425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683510_1684437_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_162494028.1|1684549_1685329_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685319_1686516_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686546_1687497_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687718_1688408_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688472_1689228_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689279_1690272_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690281_1691235_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691350_1692313_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693714_1694143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694139_1695090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1695383_1696106_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696544_1697732_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1697735_1698086_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699835_1700807_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700820_1701534_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701538_1702456_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702562_1702859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702957_1703908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	1936672	2006324	4107439	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936672_1939330_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939407_1940610_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940606_1941119_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941241_1941679_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941955_1942906_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943004_1943955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1944118_1946014_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1946127_1946295_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946358_1946595_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1946963_1948115_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1949678_1950629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951080_1952082_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952254_1953112_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953108_1954371_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954471_1954846_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1954918_1956106_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956190_1956961_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957074_1957839_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957789_1959091_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1959087_1959894_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1961638_1962610_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962766_1963279_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963437_1964412_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965412_1966207_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966232_1967039_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967149_1967740_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967750_1968929_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969031_1969406_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969658_1970990_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971056_1974287_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975777_1976524_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976608_1977070_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977107_1978166_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978128_1979958_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1979997_1980570_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1981994_1982816_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983134_1984457_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984816_1985452_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985411_1986362_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987232_1988105_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988182_1989322_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989680_1990937_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990942_1991470_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991474_1992293_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992292_1993015_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993036_1993351_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993368_1994517_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994547_1995423_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995419_1996739_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996811_1998008_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998018_1999506_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002100_2003000_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003137_2004103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004201_2005152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005373_2006324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2017820	2068265	4107439	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2017820_2018771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019908_2020205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020379_2021732_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021874_2022891_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024870_2025884_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2025970_2026876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027032_2027377_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027534_2027993_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028006_2030223_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030219_2031281_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031309_2032284_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032235_2033054_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033066_2033675_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2033849_2034245_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034263_2035703_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035731_2036079_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036097_2037048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037700_2038651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038734_2040552_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040625_2041273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041285_2042215_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042384_2042849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043096_2043777_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043825_2045517_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045532_2046084_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046080_2046452_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046564_2047401_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047411_2047936_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048033_2048213_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048342_2049317_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049447_2049804_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049793_2050669_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050767_2051652_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051673_2052969_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053917_2054568_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054655_2056176_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056433_2058299_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059344_2060295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060393_2061344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162493101.1|2061361_2061502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062316_2062676_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062663_2064100_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064096_2064750_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064746_2065940_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066043_2067318_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067314_2068265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2079469	2120160	4107439	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2079469_2080420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080518_2081469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081428_2081842_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082126_2082426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082835_2085118_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2085583_2085778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085803_2087834_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087853_2088066_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088343_2088883_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088996_2090292_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090368_2091526_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091709_2092609_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092627_2093932_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093897_2095004_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095091_2095328_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095466_2096537_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096540_2097896_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2097922_2099080_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099085_2099724_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2099725_2101021_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2101070_2102357_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102372_2102879_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102875_2104024_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104051_2104477_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104799_2107682_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107774_2108530_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109295_2110645_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110743_2111694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111792_2112743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112816_2113290_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113315_2114524_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114520_2115294_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115293_2115917_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116082_2116343_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116646_2117228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117294_2117549_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117535_2120160_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2147943	2213492	4107439	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147943_2148894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149094_2149904_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150028_2150979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150975_2151869_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151993_2152188_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152187_2152529_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152538_2154401_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154530_2155043_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155045_2155369_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155370_2155781_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155818_2157030_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157047_2157560_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157775_2158267_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158519_2160556_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160633_2161836_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161964_2162615_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2164172_2165123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165693_2165906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165923_2166655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166689_2167331_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167323_2167992_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170204_2170981_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171002_2172160_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172156_2172588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2172584_2173382_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173401_2173803_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173869_2174841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174906_2176130_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176357_2177308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177431_2179885_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180073_2181378_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181482_2182136_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182138_2183449_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183627_2184206_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184317_2184518_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184863_2185430_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185513_2185717_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186023_2186344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186385_2186667_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186741_2187998_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188380_2188710_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190280_2191102_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191101_2192241_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192247_2193144_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2193158_2195066_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195425_2198038_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198090_2200391_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200387_2201596_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201857_2202232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202228_2203179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203277_2205272_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205331_2206297_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206286_2209148_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209150_2209657_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209761_2210970_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210971_2211910_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212071_2212545_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212541_2213492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2541951	2580541	4107439	transposase,protease	Planktothrix_phage(14.29%)	36	NA	NA
WP_005012808.1|2541951_2542902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542919_2543084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543080_2544775_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544771_2545857_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545904_2546804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546814_2547459_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548480_2551723_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551733_2552888_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553114_2554077_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554175_2555126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555224_2556175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2556184_2556874_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2556933_2557371_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557416_2558310_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558357_2559530_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559526_2560681_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2560877_2561228_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561217_2561652_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_005015810.1|2561668_2562619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562766_2563234_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563214_2564372_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564437_2565364_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565481_2566432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2566466_2566892_-	membrane protein	NA	NA	NA	NA	NA
WP_010930359.1|2567015_2567735_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2567802_2570166_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2570327_2571155_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2571166_2571940_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2571936_2572542_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2572528_2573710_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2573706_2574501_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2574501_2574957_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2575028_2576120_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2576128_2576692_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2576817_2579154_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2579206_2580541_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 23
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2608712	2675212	4107439	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608712_2609663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610032_2610605_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610607_2611618_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611610_2612111_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612121_2612463_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612531_2613266_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613282_2613552_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613574_2614363_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614409_2615426_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615642_2617085_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617263_2618883_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619003_2620824_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620902_2622435_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622468_2624115_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624184_2625207_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625224_2626358_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626360_2627050_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627049_2627835_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627878_2628643_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628681_2630103_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630168_2630873_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630920_2631340_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631352_2631760_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631943_2632654_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632780_2633071_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633088_2633571_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638076_2639231_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639536_2640553_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640799_2641588_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641654_2642335_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642331_2643102_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643200_2644151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644206_2645124_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645134_2646313_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646332_2647328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077087424.1|2648916_2649525_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649512_2650553_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650570_2651533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651529_2652723_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652719_2653517_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653542_2654529_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654547_2656587_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656788_2657469_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657482_2658394_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658390_2658969_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659107_2660013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660020_2663440_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663427_2666028_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666983_2667616_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668009_2668768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668764_2669967_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670154_2671105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672012_2673158_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673144_2673900_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674016_2674196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674261_2675212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2838826	2904411	4107439	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2838826_2839777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2839875_2840826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2840843_2841032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2841028_2842018_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2842101_2842455_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2842532_2843141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2844814_2845393_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2845417_2846371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2846410_2847328_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2847449_2848376_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2848383_2849130_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2849456_2850398_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2850624_2852322_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2852756_2854178_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2854331_2855111_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2855235_2856114_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2856219_2857344_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2857389_2858352_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2858344_2859199_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2859306_2859717_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2859713_2860664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2860762_2861644_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2861721_2863101_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2863139_2863985_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2864000_2864315_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2864347_2864884_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2865056_2865632_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2865734_2866472_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2866539_2868177_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2868284_2869040_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2869027_2869990_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2870097_2870892_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2870953_2873029_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2873193_2875569_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2875649_2877005_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2878483_2879206_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2879260_2880244_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2880373_2881324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2881320_2882223_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2882310_2883069_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2883081_2884173_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2884270_2885698_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2885927_2887142_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2887187_2890058_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2892468_2892957_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2893082_2895779_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2895933_2898216_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2898381_2899014_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2899112_2900063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900109_2900664_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900731_2901577_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901646_2902615_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145926199.1|2902614_2904411_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2921981	2978140	4107439	tRNA,transposase,holin	Catovirus(22.22%)	49	NA	NA
WP_010930190.1|2921981_2923502_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923544_2923847_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923843_2924476_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924554_2926420_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926416_2927211_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927239_2928355_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929259_2930138_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930137_2930962_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|2931129_2932080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932292_2935142_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935123_2935852_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2935992_2937456_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937452_2937824_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937841_2939155_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939191_2939650_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2939604_2939745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2939762_2940713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2940709_2941723_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2941862_2942849_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2943207_2943915_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2944495_2945446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945597_2946200_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946218_2946851_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946895_2947147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947088_2948975_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2948993_2949836_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2949832_2951191_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2951411_2952206_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2952436_2953930_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2954165_2956247_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2956441_2957482_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2957616_2958633_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2958654_2959512_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2959556_2960333_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2960545_2960683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2960700_2961651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961677_2962142_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963348_2965637_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965753_2966626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966668_2967823_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967857_2968688_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968771_2970316_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970358_2970718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970719_2971133_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971173_2971491_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971575_2972292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972555_2973977_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2974043_2976791_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2977123_2978140_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	2986761	3059278	4107439	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2986761_2987778_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2988715_2990143_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2990139_2991162_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2991151_2991625_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2991765_2992653_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2992649_2994293_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2994289_2995297_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2996127_2997144_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2997243_2997876_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2997884_2998274_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2998326_2999379_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3000242_3001949_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3002022_3002523_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3002537_3004595_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3004621_3004915_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3005016_3005964_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3005976_3006852_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3006972_3007533_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3007567_3007891_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3008326_3009064_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3009362_3010313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3010556_3010820_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3010893_3011175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3011191_3012052_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3012048_3012384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3012437_3013088_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3014768_3015713_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3015758_3016076_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3016078_3017017_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3017194_3017680_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3017698_3018247_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3018278_3018431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3019760_3020402_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3020556_3022905_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3022901_3023840_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3023865_3025056_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3025052_3025826_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3025855_3027049_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3027166_3028177_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3028194_3030231_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3030425_3031166_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3031264_3032215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3032257_3033433_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3033654_3035445_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3035457_3037119_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3037131_3039837_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3040129_3041884_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3041880_3042507_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3042503_3043355_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3043484_3045545_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3045731_3046346_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3046491_3046743_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3046812_3048195_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3048191_3051371_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3052178_3053096_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3053147_3053879_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3053938_3054511_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3056019_3057036_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3057173_3058223_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3058327_3059278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	3078678	3143618	4107439	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3078678_3079629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3079727_3080312_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3080346_3081336_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3081332_3082274_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3082270_3083491_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3083533_3083848_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3084039_3084399_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3084400_3086116_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3086303_3086975_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3086989_3088318_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3088314_3089214_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3089300_3090386_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3090378_3091509_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3091511_3094193_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3094563_3095145_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3095270_3095996_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3095992_3096670_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3096885_3098067_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3098839_3099022_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3099051_3100002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3100131_3100524_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3100800_3101712_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3101836_3102811_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3102807_3103758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3103856_3104942_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3105039_3105450_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3106065_3107979_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3108114_3110727_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3110728_3111463_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3111626_3112808_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3112804_3113017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3113013_3113994_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3114039_3114867_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3115016_3116831_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3116885_3117269_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3117265_3118216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3118328_3118580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3118773_3118989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3119085_3120204_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3120323_3120536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3120695_3120917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929853.1|3120969_3121920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3123096_3124467_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3124499_3125291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3125303_3126359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3126384_3127260_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3127365_3127614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3127648_3129103_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3129099_3129621_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3129649_3131002_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3131225_3134114_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3136258_3137560_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3137574_3138291_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3138572_3139253_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3139780_3140440_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3140838_3142671_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3142667_3143618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	3235241	3304244	4107439	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3235241_3236192_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236188_3237208_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237217_3239926_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240073_3240730_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240828_3241779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3241926_3242820_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3243019_3244714_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244748_3245675_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245743_3246841_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246859_3247723_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247734_3248517_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248513_3249632_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249628_3251161_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251201_3252209_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252353_3253076_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253091_3254114_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254430_3255165_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255249_3256995_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3256991_3257744_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257788_3258745_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258833_3259400_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259407_3260268_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3260297_3261026_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_023998704.1|3261057_3261741_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262578_3263493_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263557_3264466_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264556_3265981_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3265982_3267305_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267301_3269440_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269517_3274638_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274738_3275047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275116_3275674_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275689_3277171_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3277225_3279079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3279341_3280679_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280713_3282711_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282728_3284777_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284907_3285774_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286042_3287008_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287122_3288271_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3288695_3289007_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289040_3289301_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289450_3290584_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290654_3291791_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291956_3292751_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292813_3293257_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293372_3294323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3294445_3294853_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3294925_3297121_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3297342_3298293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3298252_3298777_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3298908_3299880_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3299999_3302444_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3302459_3303050_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3303293_3304244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	3319690	3419803	4107439	protease,terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3319690_3320641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321372_3321750_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321734_3322436_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322579_3323272_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323271_3324375_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324484_3326857_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326853_3328413_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328437_3329235_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329266_3330412_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330516_3331959_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331961_3333191_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335328_3336279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3337408_3337966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337941_3338292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3338460_3339255_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3339251_3340301_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3340300_3340990_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3341076_3341574_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3341605_3342922_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342938_3343913_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343949_3344408_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3344407_3345088_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3345090_3345519_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3345571_3347302_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3347367_3347940_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347920_3348607_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348962_3349634_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3349962_3350184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3350183_3350465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3350461_3350977_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350976_3351528_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3351506_3351749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351753_3352566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3352565_3352829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352869_3353067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3353047_3353464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3353468_3357425_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357417_3357807_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357803_3358337_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358404_3358764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358773_3361386_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361411_3361702_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361719_3362049_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362058_3362577_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362831_3363332_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363339_3363762_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363758_3364157_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364153_3364549_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3364548_3364737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364750_3365233_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365295_3365547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3366221_3367172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367600_3368203_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368325_3368568_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368573_3369629_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369657_3371076_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371078_3372356_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3372342_3372828_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3373467_3374418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3374435_3374657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3374674_3375364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3375356_3375608_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3376162_3376774_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376845_3377052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377303_3378254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378352_3379426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379593_3380388_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380427_3380952_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380944_3382687_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382896_3383655_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383657_3384365_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384381_3385263_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385273_3386032_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3386000_3386756_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386825_3388244_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388265_3388916_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389049_3389385_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389473_3390424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390500_3392321_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392325_3393399_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393521_3394490_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394563_3395475_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395493_3396066_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396146_3396695_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396694_3398284_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398353_3398593_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398633_3399659_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399724_3400906_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401002_3401455_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401464_3402805_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3403121_3404159_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404540_3404900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404983_3405925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3405999_3406950_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407243_3408338_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3408428_3409301_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409322_3410162_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410237_3411755_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411851_3412952_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412968_3413391_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3413413_3413626_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413672_3414593_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414775_3415525_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415527_3415857_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3416144_3417497_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3417508_3417892_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417953_3418754_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418852_3419803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011187	Bordetella pertussis strain H703 chromosome, complete genome	4107439	4006507	4071419	4107439	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006507_4006993_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007081_4007219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007211_4008192_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008458_4009268_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009307_4009988_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009981_4010440_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010451_4010814_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010896_4011580_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011635_4011944_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011962_4012277_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012273_4014748_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014755_4016147_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016143_4016329_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016307_4017009_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017005_4017827_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017807_4018932_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018924_4019944_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020149_4021040_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021284_4022076_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022158_4022533_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022510_4023920_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023912_4025295_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025629_4027234_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027311_4028283_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028293_4029220_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029610_4030561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030730_4031957_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032156_4033023_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033015_4033978_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034078_4035029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035127_4036078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036176_4037127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037123_4038617_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038613_4041721_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041717_4044786_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044782_4046033_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046213_4046966_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047007_4047652_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047660_4048641_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048740_4049484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049566_4049914_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050011_4050854_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050898_4051786_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051812_4052001_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052098_4053556_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053542_4055069_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055087_4055555_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055554_4056577_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056697_4057438_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057492_4058593_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058594_4059785_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059904_4060921_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061239_4061911_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061907_4062816_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063027_4063675_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067535_4068603_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068613_4069423_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069512_4070286_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070286_4070451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070468_4071419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
