The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	27282	70036	4107280	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	77634	136108	4107280	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_010930363.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	164893	225404	4107280	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	233336	286924	4107280	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	468501	585347	4107280	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|468501_469452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470174_471449_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471535_472618_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472628_473441_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473477_473804_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473808_474369_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474609_475602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475620_476616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476631_478008_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478000_480382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480398_480788_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480914_481145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481249_482200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482298_483249_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483245_484118_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485048_486335_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486388_487315_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487333_487789_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|488640_489432_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489463_490084_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490080_490710_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490722_491331_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491327_492317_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492422_493637_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495588_496539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497972_499259_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|499424_499733_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|499733_500399_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|500439_502230_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502342_503203_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|503199_504405_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504401_505286_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506802_507237_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507199_508198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508309_509455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509529_510858_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510891_511482_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511771_512566_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513735_514470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514476_515343_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515350_517126_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517168_517666_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517962_518913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519011_519962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520302_521253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523576_524725_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|524769_525432_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525545_526538_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526534_527272_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|527351_528173_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528261_529125_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529251_529488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531462_532497_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|532555_533533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533540_534461_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534457_536158_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536160_537066_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537109_538243_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538371_539322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539420_541490_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541532_543635_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543941_545018_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545093_545978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546160_546583_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546592_547993_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548035_548941_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549039_550581_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550615_551155_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551167_551638_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551775_552018_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552134_553016_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553088_553409_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|554260_555211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556534_557311_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557345_559118_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559119_560022_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560146_560506_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560537_561500_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561598_562549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562561_563497_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563556_564396_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564392_565562_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565558_566848_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566890_567265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|567370_568108_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568115_568820_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569083_570604_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570659_571223_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571241_572273_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572269_573058_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|573078_573237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|573233_574223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575979_576930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578152_579055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579056_579911_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579957_581067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581077_581596_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581625_582258_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582329_582989_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|582985_584206_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584474_585347_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	589761	653594	4107280	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|589761_590778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591049_591676_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|591731_592859_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592864_598582_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599149_600094_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600282_601218_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601335_602907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602986_604195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604692_605610_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607970_608192_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608522_609539_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609623_609875_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609878_610694_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610806_611685_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611796_613560_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613675_615016_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616085_617510_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617509_618211_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619715_620666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620761_621733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621737_622418_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622555_622948_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623055_624072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624311_625097_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625191_626601_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626611_627412_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627432_628203_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|628245_628713_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628709_629660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|631608_632487_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|633413_636392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|636745_637696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|637692_638781_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|638816_639680_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|640819_641209_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|641212_641995_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|642028_642814_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|643089_644229_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|644225_645017_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|645013_645763_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|645759_646632_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|646631_647633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|647629_648793_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|648818_649502_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|649455_650790_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|650782_651877_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|652643_653594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	672505	741674	4107280	integrase,transposase,tRNA,protease	Bacillus_phage(20.0%)	54	719642:719660	740567:740585
WP_023995489.1|672505_673456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|673554_675030_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|676617_677505_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|677507_678449_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|678494_680060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|681837_683163_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|683345_684803_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|684766_685264_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|685294_686266_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_077069195.1|686318_686756_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|686879_687548_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|688276_689380_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|689482_690760_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|690771_691797_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|691798_693169_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|693169_694306_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|694352_696278_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|696274_697396_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|697392_698547_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|698543_699674_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|699681_701247_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|701253_702636_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|702914_703526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|703617_705033_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|705050_705761_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|705757_707080_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|707159_709121_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|709246_710560_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|710668_711967_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|712149_713058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|713067_713277_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|713288_714968_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|715069_716023_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|716113_716941_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|716939_718826_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|718822_719422_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|719470_720370_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719642:719660	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|720578_721529_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|721651_722266_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|722394_722991_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|722987_723770_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|723842_724934_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|725213_726341_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|726682_727729_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|727876_730996_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|730997_733949_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|733964_735176_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010927744.1|735257_736208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|736396_737347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737363_737858_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737861_738119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738662_739574_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739655_739940_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740723_741674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740567:740585	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 9
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	996786	1099179	4107280	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996786_997902_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998002_998821_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998918_999530_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999689_1001066_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001128_1001587_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001671_1002367_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002428_1002710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003272_1004025_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004069_1005146_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005142_1006093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006195_1006858_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006952_1007123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007475_1008477_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008479_1009676_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009696_1010500_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010580_1010877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010907_1011471_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011511_1012369_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012376_1013126_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013147_1014020_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014048_1014828_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014861_1015659_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018313_1018706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018699_1019560_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019563_1020526_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021302_1021992_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022852_1023803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024152_1025022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025092_1025788_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025777_1026287_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026283_1027504_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027451_1028354_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029240_1030527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030565_1031939_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031977_1032679_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032977_1033967_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034067_1034529_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034544_1035093_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035234_1036710_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036815_1037907_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037910_1038693_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038702_1039491_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040616_1041051_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041047_1042058_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042101_1043028_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043314_1043683_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043899_1044850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044894_1047321_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047369_1048062_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048134_1049334_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049351_1050257_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050372_1051302_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051327_1052674_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052701_1053451_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053464_1054247_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|1054439_1055390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055451_1056561_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057073_1057910_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057979_1058945_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|1058941_1059892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060277_1060820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061855_1062806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063047_1063416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063461_1064586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065720_1066473_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066564_1067185_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067288_1068239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068235_1070344_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070488_1071148_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071179_1071644_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071919_1072105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072156_1072909_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072915_1074178_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074219_1075458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076535_1077663_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077673_1078501_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078487_1079354_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080720_1081125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081216_1082167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082536_1083448_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083462_1084173_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084169_1085414_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085415_1085850_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085878_1086184_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086282_1087233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087289_1088444_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088518_1089469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090000_1090798_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090845_1091499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091455_1092544_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092708_1094934_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097211_1098108_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098228_1099179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	1129565	1200536	4107280	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129565_1130516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130572_1131685_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134068_1135019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135609_1136386_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136503_1136767_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136867_1137872_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138072_1139674_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139699_1140458_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140549_1141206_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141296_1142061_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142070_1142259_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142314_1143358_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143354_1143768_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143764_1144385_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144665_1145616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145783_1147175_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147247_1147826_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147942_1149340_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149455_1150661_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150760_1151279_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151373_1151619_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151846_1152161_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152250_1157440_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157436_1159605_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159660_1161976_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161980_1163300_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163318_1164992_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1164996_1165665_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165821_1169643_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169973_1170924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170945_1172091_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172239_1173169_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173165_1174254_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174250_1175054_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175050_1175782_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175839_1177129_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177225_1177828_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182381_1182720_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183427_1183694_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185400_1186351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186347_1187679_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188939_1190940_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190932_1191574_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191570_1191978_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191974_1192775_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192849_1193554_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193585_1194380_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194376_1195327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195425_1196376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196474_1196909_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1196991_1199328_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199519_1200536_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	1247930	1328805	4107280	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247930_1248881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248877_1249828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250088_1251117_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251196_1252495_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252491_1253073_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253385_1257432_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257672_1265334_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265330_1266281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267420_1267894_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268033_1268654_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_193427900.1|1268798_1269590_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269644_1270736_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270757_1271201_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271229_1271862_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271972_1272389_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272381_1273074_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273180_1273555_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273631_1274441_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274536_1275481_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275519_1276491_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276581_1277019_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277077_1277959_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278962_1279823_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279855_1281238_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281234_1282254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282626_1283121_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283128_1283869_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283949_1285554_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285593_1286382_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287584_1288673_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289553_1290366_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290378_1290687_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290804_1292535_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292536_1293682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293811_1294480_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294601_1295069_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295204_1296587_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296583_1297708_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297704_1300341_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300756_1301707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305453_1306065_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306287_1307748_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307844_1309437_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309790_1310048_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310049_1311390_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311485_1312175_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312187_1313618_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315342_1316164_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316174_1317746_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317774_1318752_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318778_1319582_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319578_1320373_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320380_1321616_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321608_1322043_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322792_1323743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324364_1326092_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326203_1327562_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327854_1328805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	1448199	1500357	4107280	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1448199_1449150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449316_1449670_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449682_1450045_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450086_1450512_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450714_1451971_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452169_1453150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453299_1454541_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454639_1455590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455598_1456294_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459115_1459715_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459725_1461891_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461914_1463699_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463698_1463788_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464482_1464755_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464754_1466821_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466817_1467768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467866_1468817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468932_1469265_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469261_1469948_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469934_1470894_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470935_1473296_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473295_1473928_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474029_1475370_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475416_1476772_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476897_1477542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477486_1477804_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478076_1478592_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478685_1478847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478862_1479618_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479956_1480163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480170_1480830_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481124_1483329_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483439_1484663_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484785_1485760_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485827_1487021_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487035_1487836_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487832_1489689_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489685_1490291_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490309_1491695_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492420_1493647_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493735_1494518_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494616_1495567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495593_1496367_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496378_1497620_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499406_1500357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	1544282	1612368	4107280	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1544282_1544771_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544888_1545467_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545572_1545941_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546039_1546990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1546996_1548109_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548795_1549998_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550033_1550180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550201_1552862_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552874_1556279_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556946_1559172_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559218_1559545_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559595_1560204_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560302_1561253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561322_1562087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562083_1562683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562786_1563638_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563697_1564324_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564320_1565271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565369_1566482_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566471_1567473_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567578_1569090_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569086_1570391_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570502_1571063_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571330_1571885_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572340_1572556_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572810_1575408_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575404_1576592_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1577250_1577865_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1577953_1579081_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579092_1579998_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580890_1581841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582022_1582775_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582843_1583503_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583499_1584228_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584240_1586520_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586544_1586748_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586789_1587422_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587557_1588475_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588471_1589185_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589422_1590193_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590197_1590797_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591041_1592532_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592590_1592875_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1593012_1593168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1593440_1594367_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594503_1595244_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595410_1596787_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596968_1597874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599525_1601328_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1601454_1602096_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602194_1603145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603166_1604387_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604572_1605985_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606048_1607116_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607115_1608603_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608612_1609557_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609716_1610415_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610492_1611398_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611417_1612368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	1648335	1703926	4107280	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648335_1649286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649344_1650118_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650110_1651667_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651663_1652614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653940_1654543_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654782_1655484_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655477_1656260_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656444_1657395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657493_1658231_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658420_1659179_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659225_1660215_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660392_1661361_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662900_1663869_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663877_1664819_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665292_1666303_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666293_1667808_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667804_1669151_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1669153_1670188_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670237_1671863_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672415_1673366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673470_1674418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674471_1676286_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676278_1676953_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677082_1680157_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680170_1680470_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680784_1681408_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1681651_1682521_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682498_1683443_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683528_1684455_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684567_1685347_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685337_1686534_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686564_1687515_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687736_1688426_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688490_1689246_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689297_1690290_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690299_1691253_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691368_1692331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693732_1694161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694157_1695108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1695401_1696139_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696562_1697750_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1697753_1698134_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699853_1700825_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700838_1701552_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701556_1702474_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702580_1702877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702975_1703926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2024095	2072110	4107280	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2024095_2025046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2025144_2027745_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2027851_2028856_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2028964_2030305_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2030345_2031374_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2031569_2032115_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2032111_2032672_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2032770_2033721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2033758_2034346_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2034363_2034747_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2036106_2037399_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2037533_2038574_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2038671_2039688_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2039955_2040603_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2040728_2041487_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2041471_2042251_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2042268_2043153_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2043149_2043929_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2044033_2044633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2044921_2045674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2045792_2047193_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2047216_2047615_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2047790_2047991_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2048129_2048858_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2048991_2050407_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2050410_2051274_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2051286_2052036_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2052218_2054234_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2054215_2054884_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2055658_2056609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2056707_2057658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2057806_2058145_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2058202_2058364_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2058395_2058596_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2058861_2061435_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2061505_2064055_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2066605_2067094_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2067185_2068337_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2068390_2069212_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2069250_2070480_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2070608_2071049_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2071159_2072110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2119528	2174957	4107280	transposase,tRNA	uncultured_Caudovirales_phage(16.67%)	50	NA	NA
WP_005012067.1|2119528_2120479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|2122036_2122687_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|2122815_2124018_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|2124095_2126132_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|2126384_2126876_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|2127091_2127604_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|2127621_2128833_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|2128870_2129281_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|2129282_2129606_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|2129608_2130121_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|2130250_2132113_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|2132122_2132464_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|2132463_2132658_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|2132782_2133676_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|2133672_2134623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2134747_2135557_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2135757_2136708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2137981_2139199_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2140255_2141158_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2141234_2142107_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2142237_2142606_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2142663_2143710_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2143905_2145162_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2145166_2146504_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2146653_2147610_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2147712_2148645_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2148760_2149081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2149073_2149433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2149480_2151055_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2151107_2152052_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2152069_2152900_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2152892_2154527_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2154523_2155879_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2156785_2158363_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2158366_2159641_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2159738_2160113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2161828_2162962_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2162999_2163605_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2163601_2164420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2164491_2167116_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2167102_2167357_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2167423_2168374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930591.1|2168472_2169054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2169357_2169618_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2169783_2170407_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2170406_2171180_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2171176_2172385_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2172410_2172884_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2172957_2173908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2174006_2174957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2178018	2225307	4107280	transposase,tRNA,protease	Klosneuvirus(22.22%)	46	NA	NA
WP_010930794.1|2178018_2180901_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2181223_2181649_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2181676_2182825_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2182821_2183328_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2183334_2184630_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2184688_2185975_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2185976_2186615_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2186617_2187778_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2187804_2189160_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2189163_2190234_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2190372_2190609_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2190696_2191803_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2191768_2193073_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2193091_2193991_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|2194174_2195332_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|2195408_2196704_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|2196817_2197357_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|2197634_2197847_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|2197866_2199897_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|2199922_2200117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2200582_2202865_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|2203274_2203574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|2203858_2204272_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|2204231_2205182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2205280_2206231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2206430_2207516_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2207531_2208293_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2208289_2209249_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2209311_2209812_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2209844_2210588_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2210683_2210923_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2210936_2211089_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2211174_2212665_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2212756_2213695_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2213691_2213868_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2213870_2214533_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2216154_2216298_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2216294_2217269_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2217435_2218386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2218382_2219657_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2219760_2220954_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2220950_2221604_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2221600_2223037_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2223024_2223384_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2224198_2224339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2224356_2225307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2246000	2299240	4107280	transposase	Mycobacterium_phage(33.33%)	48	NA	NA
WP_005012067.1|2246000_2246951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2247603_2248554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2248572_2248920_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2248948_2250388_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2250406_2250802_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2250976_2251585_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2251597_2252416_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2252367_2253342_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2253370_2254432_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2254428_2256645_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2256658_2257117_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2257274_2257619_-	exported protein	NA	NA	NA	NA	NA
WP_077069197.1|2257775_2258681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2258767_2259781_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2261760_2262777_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2262919_2264272_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2264446_2264743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2265880_2266831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2267316_2267493_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2268177_2269149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2269152_2270007_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2270025_2270847_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2270878_2271673_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2271721_2272327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2272284_2273118_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2273403_2274909_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2274950_2275733_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2275802_2276249_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2276245_2277472_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2277464_2277869_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2278028_2278331_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2278327_2279278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2279499_2280450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2280548_2281514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2281651_2282551_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2285145_2286633_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2286643_2287840_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2287912_2289232_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2289228_2290104_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2290134_2291283_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2291300_2291615_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2291636_2292359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2292358_2293177_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2293181_2293709_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2293714_2294971_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2295329_2296469_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2296546_2297419_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2298289_2299240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2507162	2562642	4107280	transposase,tRNA	Planktothrix_phage(40.0%)	50	NA	NA
WP_005012067.1|2507162_2508113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508592_2509249_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509263_2510931_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510933_2511563_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511774_2512869_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2513013_2513826_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513829_2515533_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515583_2516714_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516900_2517977_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518058_2518709_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518723_2520127_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520410_2521229_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2521225_2521930_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522829_2523945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523978_2524353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524375_2525533_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525545_2525779_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526413_2529383_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529397_2529607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529758_2530388_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2530384_2532475_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532498_2533179_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533175_2533736_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533742_2534840_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534992_2535586_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535582_2536875_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536888_2537431_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537440_2538277_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538310_2539372_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539413_2540466_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540481_2540784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540925_2541876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2542054_2543749_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543745_2544831_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544878_2545778_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545788_2546433_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547454_2550697_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550707_2551862_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552088_2553051_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553149_2554100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554198_2555149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555158_2555848_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555907_2556345_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556390_2557284_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930742.1|2557433_2558384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811746.1|2558380_2559553_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559549_2560704_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2560900_2561251_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561240_2561675_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2561691_2562642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2608735	2675235	4107280	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608735_2609686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610055_2610628_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610630_2611641_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611633_2612134_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612144_2612486_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2612497_2613289_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613305_2613575_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613597_2614386_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614432_2615449_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615665_2617108_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617286_2618906_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619026_2620847_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620925_2622458_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2622491_2624138_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624207_2625230_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625247_2626381_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626383_2627073_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627072_2627858_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627901_2628666_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628704_2630126_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630191_2630896_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630943_2631363_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631375_2631783_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631966_2632677_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632803_2633094_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633111_2633594_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638099_2639254_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639559_2640576_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640822_2641611_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641677_2642358_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642354_2643125_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643223_2644174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644229_2645147_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645157_2646336_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646355_2647351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648939_2649548_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649535_2650576_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650593_2651556_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651552_2652746_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652742_2653540_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653565_2654552_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654570_2656610_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2656811_2657492_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657505_2658417_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658413_2658992_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659130_2660036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660043_2663463_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663450_2666051_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2667006_2667639_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668032_2668791_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2668787_2669990_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670177_2671128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672035_2673181_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673167_2673923_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674039_2674219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674284_2675235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2873392	2946717	4107280	transposase,tRNA,protease	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2873392_2874748_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876226_2876949_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877003_2877987_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878116_2879067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879063_2879966_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880053_2880812_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880824_2881916_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882013_2883441_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883670_2884885_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884930_2887801_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890211_2890700_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890825_2893522_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893676_2895959_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2896132_2896756_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2896854_2897805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2897851_2898406_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898473_2899319_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899388_2900357_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2900356_2901220_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2904052_2907979_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2908714_2911945_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2912226_2913054_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2913087_2913783_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913775_2915056_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2915065_2916043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2916024_2917725_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917827_2918931_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918961_2919717_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919723_2921244_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921286_2921589_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921585_2922218_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922296_2924162_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924158_2924953_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924981_2926097_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927001_2927880_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927879_2928704_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2928871_2929822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930034_2932884_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2932865_2933594_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933734_2935198_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935194_2935566_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935583_2936897_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936933_2937392_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937504_2938455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938451_2939465_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939604_2940591_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940949_2941657_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942237_2943188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943339_2943942_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943960_2944593_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944637_2944889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944830_2946717_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	2958442	3009104	4107280	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	43	NA	NA
WP_005013747.1|2958442_2959393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2959491_2960442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960468_2960933_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962139_2964428_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964544_2965417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965459_2966614_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966648_2967479_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967562_2969107_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969149_2969509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969510_2969924_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969964_2970282_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970366_2971083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971346_2972768_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972834_2975582_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975914_2976931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977266_2977908_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977998_2979435_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979592_2980666_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980662_2981799_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981943_2982288_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982354_2984235_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984284_2985220_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2985552_2986569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987506_2988934_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988930_2989953_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989942_2990416_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990556_2991444_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991440_2993084_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993080_2994130_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994918_2995935_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996034_2996667_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996675_2997065_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997117_2998170_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999033_3000740_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000813_3001314_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001328_3003386_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003412_3003706_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003807_3004755_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004767_3005643_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005763_3006324_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006358_3006682_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007117_3007855_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008153_3009104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	3030055	3102549	4107280	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012808.1|3030055_3031006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031048_3032224_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032445_3034236_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034248_3035910_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035922_3038628_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038920_3040675_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040671_3041298_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041294_3042146_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042221_3044336_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044522_3045137_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045282_3045534_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045603_3046986_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046982_3050162_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050969_3051887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051938_3052670_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052729_3053302_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054810_3055827_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055964_3057014_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057118_3058069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058164_3058890_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059100_3059481_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059786_3060659_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060666_3061047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061200_3062475_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063962_3064871_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065668_3066733_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068569_3069571_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069793_3070435_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070517_3072344_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072587_3073517_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073516_3074266_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074337_3075252_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075271_3076417_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076477_3077389_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077469_3078420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078518_3079103_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079137_3080127_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080123_3081065_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081061_3082282_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082324_3082639_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082830_3083190_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083191_3084907_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085094_3085766_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085780_3087109_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087105_3088005_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088091_3089177_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089169_3090303_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090302_3092984_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093354_3093936_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094061_3094787_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094783_3095461_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095676_3096858_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097630_3097813_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097842_3098793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098922_3099315_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099591_3100503_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100627_3101602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101598_3102549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	3116056	3169574	4107280	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116056_3117007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117119_3117371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3117876_3118995_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119114_3119327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119486_3119708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119760_3120711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3121887_3123258_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123290_3124082_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124094_3125150_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125175_3126051_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126156_3126405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126439_3127894_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3127890_3128412_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128440_3129793_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130016_3132905_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135049_3136351_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136365_3137082_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137363_3138044_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138055_3138223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138331_3138478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138571_3139231_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139629_3141462_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141458_3142409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143572_3145288_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145298_3145790_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3145862_3146879_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147046_3147826_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147844_3148372_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148665_3148935_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_077069198.1|3149025_3151185_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151305_3152025_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152021_3152972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153112_3154330_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154323_3154935_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155568_3156546_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156689_3157436_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157457_3157904_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158691_3160923_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3160945_3161746_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162027_3163260_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163370_3164360_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164390_3165779_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167377_3168361_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168557_3169574_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	3234032	3307194	4107280	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234032_3234983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234979_3235999_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236008_3238717_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3238864_3239521_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239619_3240570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240717_3241611_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241810_3243505_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243539_3244466_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244534_3245632_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245650_3246514_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246525_3247308_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247304_3248423_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248419_3249952_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249992_3251000_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251144_3251867_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251882_3252905_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253221_3253956_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254040_3255786_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255782_3256535_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256579_3257536_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257624_3258191_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258198_3259059_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259088_3259817_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3259848_3260532_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261369_3262284_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262348_3263257_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263347_3264772_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264773_3266096_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266092_3268231_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268308_3273429_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273529_3273838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273907_3274465_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274480_3275962_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278132_3279470_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279504_3281502_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281519_3283568_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283698_3284565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284833_3285799_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285913_3287062_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287486_3287798_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287831_3288092_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288241_3289375_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289445_3290582_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290747_3291542_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291604_3292048_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292163_3293114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293215_3293644_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293716_3295912_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296133_3297084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297043_3297568_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297699_3298671_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298790_3301235_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301250_3301841_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302084_3303035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303192_3304458_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304491_3305589_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306243_3307194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	3318481	3419643	4107280	terminase,transposase,tail,tRNA,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318481_3319432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320163_3320541_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320525_3321227_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321370_3322063_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322062_3323166_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323275_3325648_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325644_3327204_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327228_3328026_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328057_3329203_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329307_3330750_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330752_3331982_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334119_3335070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336199_3336757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336732_3337083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337251_3338046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338042_3339092_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339091_3339781_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3339867_3340365_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340396_3341713_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341729_3342704_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342740_3343199_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343198_3343879_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3343881_3344310_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344362_3346093_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346158_3346731_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346711_3347398_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347753_3348425_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348753_3348975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348974_3349256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349252_3349768_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349767_3350319_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350297_3350540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350544_3351357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351356_3351620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351660_3351858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351838_3352255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352259_3356216_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356208_3356598_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356594_3357128_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357195_3357555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357564_3360177_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360202_3360493_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360510_3360840_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3360849_3361368_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361622_3362123_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362130_3362553_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362549_3362948_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362944_3363340_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363339_3363540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363541_3364024_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364086_3364338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365012_3365963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366391_3366994_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367116_3367359_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367364_3368420_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368448_3369867_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3369869_3371147_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371133_3371619_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372258_3373209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3373465_3374155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374147_3374399_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3374953_3375565_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375636_3375843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376094_3377045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377143_3378217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378384_3379179_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379218_3379743_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379735_3381478_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381687_3382446_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382448_3383156_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383172_3384054_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384064_3384823_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384791_3385547_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385616_3387035_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387056_3387707_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387840_3388176_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3388264_3389215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930800.1|3389313_3390264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390340_3392161_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392165_3393239_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393361_3394330_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394403_3395315_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395333_3395906_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395986_3396535_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396534_3398124_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398193_3398433_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398473_3399499_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399564_3400746_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3400842_3401295_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401304_3402645_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402961_3403999_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404380_3404740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404823_3405765_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3405839_3406790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407083_3408178_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3408259_3409141_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409162_3410002_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410077_3411595_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411691_3412792_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412808_3413231_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3413253_3413466_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413512_3414433_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414615_3415365_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415367_3415697_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3415903_3417337_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3417348_3417732_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417793_3418594_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418692_3419643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011188	Bordetella pertussis strain H707 chromosome, complete genome	4107280	4029451	4089641	4107280	transposase	Planktothrix_phage(28.57%)	51	NA	NA
WP_010931661.1|4029451_4030402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030571_4031798_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031997_4032864_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032856_4033819_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033919_4034870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034968_4035919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035915_4037409_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037405_4040513_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040509_4043578_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043574_4044825_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045005_4045767_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045799_4046450_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046452_4047292_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047532_4048276_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048358_4048706_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048803_4049646_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049690_4050578_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050604_4050793_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050890_4052348_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052334_4053861_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053879_4054347_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054346_4055369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055489_4056209_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056284_4057385_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057386_4058577_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058696_4059713_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060031_4060703_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060699_4061608_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061819_4062467_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066318_4067395_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067405_4068215_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068304_4069078_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069260_4070211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070099_4071122_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071111_4072266_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072305_4073718_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073842_4074709_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074710_4075535_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075531_4076293_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076373_4077060_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077233_4078241_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078237_4079017_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079074_4080337_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4080883_4081834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816030.1|4081965_4083405_+	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	2.4e-106
WP_010927255.1|4083465_4084347_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931681.1|4084343_4085159_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010931682.1|4085160_4086204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003816037.1|4086247_4087171_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_019248557.1|4087300_4088500_-	amidohydrolase	NA	NA	NA	NA	NA
WP_005013747.1|4088690_4089641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
