The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	27281	70035	4108484	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27281_28232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28673_29108_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29140_30358_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30363_30861_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31068_32004_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32213_33005_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34624_35575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	77633	136107	4108484	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83522_84695_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85480_86713_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101832_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	164892	225403	4108484	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	233335	286923	4108484	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	390856	448365	4108484	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	590419	651610	4108484	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591866_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620619_620784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	656934	703125	4108484	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	709291	763221	4108484	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	854099	903363	4108484	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	912975	958591	4108484	transposase	Bacillus_phage(33.33%)	40	NA	NA
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|935722_936673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936725_936947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937106_937319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937438_938557_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939062_939314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940811_942626_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954831_955806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955930_956842_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957118_957511_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957640_958591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	978013	1048280	4108484	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978013_978964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979044_979956_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980016_981162_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981181_982096_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982167_982917_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982916_983846_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984089_985916_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985998_986640_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986862_987864_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989700_990765_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991562_992471_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993958_995233_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995386_995767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995774_996647_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996952_997333_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997543_998269_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998364_999315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999419_1000469_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000606_1001623_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003131_1003704_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003763_1004495_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004546_1005464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006271_1009451_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009447_1010830_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010899_1011151_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011296_1011911_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012097_1014212_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014287_1015139_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015135_1015762_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015758_1017513_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017805_1020511_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020523_1022185_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022197_1023988_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024209_1025385_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025427_1026378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026476_1027217_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027411_1029448_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029465_1030476_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030593_1031787_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031816_1032590_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032586_1033777_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033802_1034741_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034737_1037086_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037240_1037882_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037985_1039119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039211_1039364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039395_1039944_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039962_1040448_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040625_1041564_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041566_1041884_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041929_1042874_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044554_1045205_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045258_1045594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045590_1046451_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046467_1046749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046822_1047086_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047329_1048280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1060498	1117880	4108484	transposase,protease,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010929632.1|1060498_1061515_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062303_1063353_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063349_1064993_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064989_1065877_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066017_1066491_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066480_1067503_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067499_1068927_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069864_1070881_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071213_1072149_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072198_1074079_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074145_1074490_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074634_1075771_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075767_1076841_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076998_1078435_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078525_1079167_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079502_1080519_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080851_1083599_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096959_1097097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1157579	1219750	4108484	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157579_1158530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158628_1159252_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159425_1161708_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161862_1164559_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164684_1165173_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170499_1171714_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173468_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174572_1175331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176317_1177268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178435_1179158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182072_1184448_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186749_1187550_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191169_1191907_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192757_1193294_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193296_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193656_1194502_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194540_1195920_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196977_1197928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198442_1199297_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201527_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202530_1203310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205319_1207017_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208511_1209258_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215186_1215540_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215623_1216613_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216609_1216798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216815_1217766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218799_1219750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1270678	1327889	4108484	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270678_1271629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275375_1275987_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276209_1277670_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277766_1279359_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279712_1279970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279971_1281312_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281407_1282097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282109_1283540_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285264_1286086_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286096_1287668_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287696_1288674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288700_1289504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289500_1290295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290302_1291538_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291530_1291965_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292714_1293665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294286_1296014_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296125_1297484_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297540_1297759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297776_1298727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298767_1299838_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299860_1300739_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300910_1301882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302044_1302887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303048_1303729_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303722_1304892_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304888_1305920_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305963_1307205_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307239_1308772_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308852_1309476_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309506_1310118_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310153_1310624_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311055_1312060_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312096_1313611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313614_1314574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314602_1315406_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315407_1317042_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317125_1318187_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318385_1318655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318658_1319183_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319598_1320549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320545_1321580_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321688_1322327_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322621_1322849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322971_1323685_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323929_1324880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324983_1325265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325379_1326828_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326938_1327889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1418122	1470275	4108484	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418122_1419073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419090_1419243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419239_1419593_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419605_1419968_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420009_1420435_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420637_1421894_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422092_1423073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423222_1424464_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424562_1425513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425521_1426217_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429038_1429638_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429648_1431814_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431837_1433622_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433621_1433711_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434405_1434678_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434677_1436744_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436740_1437691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437789_1438740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438855_1439188_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439184_1439871_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439857_1440817_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440858_1443219_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443218_1443851_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443952_1445293_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445339_1446695_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446820_1447465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447409_1447727_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447999_1448515_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448608_1448770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448785_1449541_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449879_1450086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450093_1450753_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451047_1453252_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453362_1454586_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454708_1455683_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455750_1456944_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456958_1457759_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457755_1459612_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459608_1460214_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460232_1461618_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462343_1463570_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463658_1464441_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464539_1465490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465516_1466290_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466301_1467543_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469324_1470275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1514200	1574112	4108484	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1514200_1514689_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514806_1515385_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515490_1515859_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515957_1516908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516914_1518027_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518713_1519916_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519951_1520098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520119_1522780_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522792_1526197_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526864_1529090_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529136_1529463_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529513_1530122_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530220_1531171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531240_1532005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532001_1532601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532704_1533556_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533615_1534242_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534238_1535189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535287_1536400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536389_1537391_-	imelysin family protein	NA	NA	NA	NA	NA
WP_062826610.1|1537496_1539011_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_005012808.1|1539094_1540045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853587.1|1540053_1541358_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541469_1542030_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542297_1542852_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543307_1543523_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543777_1546375_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546371_1547559_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1548217_1548832_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1548920_1550048_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550059_1550965_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551857_1552808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552989_1553742_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553810_1554470_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554466_1555195_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555207_1557487_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557511_1557715_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557756_1558389_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558524_1559442_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559438_1560152_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560389_1561160_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561164_1561764_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562008_1563499_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563557_1563842_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1563979_1564135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564407_1565334_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565470_1566211_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566377_1567754_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567935_1568841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570492_1572295_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572421_1573063_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573161_1574112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1619284	1674875	4108484	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619284_1620235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620293_1621067_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621059_1622616_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622612_1623563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624889_1625492_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625731_1626433_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626426_1627209_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627393_1628344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628442_1629180_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629369_1630128_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630174_1631164_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631341_1632310_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633849_1634818_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634826_1635768_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636241_1637252_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637242_1638757_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638753_1640100_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1640102_1641137_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641186_1642812_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643364_1644315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644419_1645367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645420_1647235_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647227_1647902_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648031_1651106_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651119_1651419_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651733_1652357_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1652600_1653470_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653447_1654392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654477_1655404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655516_1656296_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656286_1657483_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657513_1658464_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658685_1659375_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659439_1660195_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660246_1661239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661248_1662202_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662317_1663280_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664681_1665110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665106_1666057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1666350_1667088_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667511_1668699_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1668702_1669083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670802_1671774_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671787_1672501_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672505_1673423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673529_1673826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673924_1674875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1907639	1977291	4108484	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1907639_1910297_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1910374_1911577_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1911573_1912086_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1912208_1912646_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1912922_1913873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1913971_1914922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1915175_1916981_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1917094_1917262_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1917325_1917562_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1917930_1919130_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1920645_1921596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1922047_1923049_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1923221_1924079_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1924075_1925338_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1925438_1925813_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1925885_1927073_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1927157_1927928_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1928041_1928806_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1928756_1930058_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1930054_1930861_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1932605_1933577_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1933733_1934246_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1934404_1935379_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1936379_1937174_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1937199_1938006_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1938116_1938707_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1938717_1939896_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1939998_1940373_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1940625_1941957_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1942023_1945254_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1946744_1947491_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1947575_1948037_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1948074_1949133_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1949095_1950925_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1950964_1951537_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1952961_1953783_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1954101_1955424_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1955783_1956419_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1956378_1957329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1958199_1959072_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1959149_1960289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1960647_1961904_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1961909_1962437_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1962441_1963260_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1963259_1963982_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1964003_1964318_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1964335_1965484_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1965514_1966390_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1966386_1967706_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1967778_1968975_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1968985_1970473_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1973067_1973967_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1974104_1975070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1975168_1976119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976340_1977291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	1988787	2038183	4108484	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1988787_1989738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1990875_1991172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1991346_1992699_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1992841_1993858_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1995837_1996851_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1996937_1997843_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1997999_1998344_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1998501_1998960_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1998973_2001190_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2001186_2002248_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2002276_2003251_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2003202_2004021_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2004033_2004642_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2004816_2005212_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2005230_2006670_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2006698_2007046_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2007064_2008015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2008667_2009618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2009701_2011519_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2011592_2012240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012252_2013182_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2013351_2013816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2014063_2014744_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2014792_2016484_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2016499_2017051_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2017047_2017419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2017531_2018368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2018378_2018903_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2019000_2019180_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2019309_2020284_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2020414_2020771_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2020760_2021636_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2021734_2022619_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2022640_2023936_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2024884_2025535_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2025622_2027143_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2027400_2029266_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2030311_2031262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2031279_2031420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2032234_2032594_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2032581_2034018_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2034014_2034668_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2034664_2035858_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2035961_2037236_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2037232_2038183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2049387	2090078	4108484	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2049387_2050338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2050436_2051387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2051346_2051760_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2052044_2052344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2052753_2055036_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2055721_2057752_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2057771_2057984_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2058261_2058801_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2058914_2060210_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2060286_2061444_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2061627_2062527_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2062545_2063850_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2063815_2064922_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2065009_2065246_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2065384_2066455_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2066458_2067814_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2067840_2069001_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2069003_2069642_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2069643_2070930_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2070988_2072284_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2072290_2072797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2072793_2073942_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2073969_2074395_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2074717_2077600_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2077692_2078448_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2079213_2080563_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2080661_2081612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2081710_2082661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2082734_2083208_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2083233_2084442_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2084438_2085212_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2085211_2085835_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2086000_2086261_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2086564_2087146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2087212_2087467_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2087453_2090078_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2117861	2231523	4108484	transposase,protease,tRNA	Lake_Baikal_phage(11.54%)	100	NA	NA
WP_010929577.1|2117861_2118812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2119012_2119822_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2119946_2120897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2120893_2121787_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2121911_2122106_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2122105_2122447_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2122456_2124319_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2124448_2124961_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2124963_2125287_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2125288_2125699_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2125736_2126948_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2126965_2127478_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2127693_2128185_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2128437_2130474_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2130551_2131754_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2131882_2132533_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2134090_2135041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2135611_2135824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2135841_2136573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2136607_2137249_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2137241_2137910_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2140122_2140899_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2140920_2142078_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2142074_2142506_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2142502_2143306_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2143319_2143721_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2143787_2144759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2144824_2146048_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2146275_2147226_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2147349_2149803_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2149991_2151296_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2151400_2152054_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2152056_2153367_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2153563_2154124_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2154235_2154436_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2154781_2155348_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2155431_2155635_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2155941_2156262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2156303_2156585_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2156659_2157916_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2158298_2158628_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2160198_2161020_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2161019_2162159_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2162165_2163062_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2163058_2164984_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2165343_2167956_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2168008_2170309_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2170305_2171514_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2171775_2172150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2172146_2173097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173195_2175190_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175249_2176215_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176204_2179066_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179068_2179575_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179679_2180888_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180889_2181828_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181989_2182463_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182459_2183410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2183508_2184459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2184569_2185010_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2185138_2186368_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2186406_2187228_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2187281_2188433_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2188524_2189013_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2191563_2194113_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2194183_2196757_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2197022_2197223_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2197254_2197416_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2197473_2197812_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2197960_2198911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2199685_2200354_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2200335_2202351_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2202533_2203283_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2203295_2204159_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2204162_2205578_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2205711_2206440_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2206578_2206779_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2206954_2207353_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2207376_2208777_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2208895_2209648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2209936_2210536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2210640_2211420_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2211416_2212301_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2212318_2213098_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2213082_2213841_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2213966_2214614_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2214881_2215898_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2215995_2217036_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2217170_2218463_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2219822_2220206_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2220223_2220811_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2220848_2221799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2221897_2222458_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2222454_2223000_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2223195_2224224_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2224264_2225605_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2225713_2226718_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2226824_2229425_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2229523_2230474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2230572_2231523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2478106	2536350	4108484	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2478106_2479057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479536_2480193_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480207_2481875_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481877_2482507_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482718_2483813_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483957_2484770_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2484773_2486477_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2486527_2487658_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487844_2488921_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489002_2489653_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489667_2491071_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491354_2492173_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2492169_2492874_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493773_2494889_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494922_2495297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495319_2496477_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496489_2496723_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497357_2500327_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500341_2500551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500702_2501332_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2501328_2503419_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503442_2504123_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504119_2504680_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504686_2505784_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505936_2506530_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506526_2507819_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507832_2508375_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508384_2509221_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509254_2510316_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510357_2511410_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511425_2511728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511869_2512820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2512837_2513002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2512998_2514693_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514689_2515775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515822_2516722_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516732_2517377_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518398_2521641_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521651_2522806_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523032_2523995_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524093_2525044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525142_2526093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526102_2526792_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526851_2527289_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527334_2528228_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528275_2529448_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529444_2530599_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2530795_2531146_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531135_2531570_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531586_2532537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532684_2533152_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533132_2534290_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534355_2535282_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535399_2536350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2578628	2645128	4108484	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578628_2579579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579948_2580521_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580523_2581534_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581526_2582027_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582037_2582379_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2582390_2583182_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583198_2583468_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583490_2584279_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584325_2585342_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585558_2587001_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587179_2588799_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588919_2590740_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590818_2592351_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2592384_2594031_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594100_2595123_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595140_2596274_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596276_2596966_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596965_2597751_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597794_2598559_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598597_2600019_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600084_2600789_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600836_2601256_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601268_2601676_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601859_2602570_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602696_2602987_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603004_2603487_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607992_2609147_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609452_2610469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610715_2611504_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611570_2612251_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612247_2613018_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613116_2614067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614122_2615040_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615050_2616229_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616248_2617244_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618832_2619441_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619428_2620469_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620486_2621449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621445_2622639_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622635_2623433_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623458_2624445_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624463_2626503_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2626704_2627385_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627398_2628310_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628306_2628885_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629023_2629929_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629936_2633356_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633343_2635944_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636899_2637532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637925_2638684_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2638680_2639883_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640070_2641021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641928_2643074_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643060_2643816_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643932_2644112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644177_2645128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2808733	2863250	4108484	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808733_2809684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810012_2810618_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810671_2811985_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812059_2812530_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812529_2813318_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813328_2814981_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815068_2816019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817180_2817687_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817683_2818448_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818463_2818748_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818812_2819802_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819973_2820903_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820874_2821561_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821594_2822140_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822184_2823450_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823446_2824349_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825530_2826475_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826569_2828087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828128_2829757_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829864_2830746_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833858_2834233_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834257_2834596_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834639_2836274_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836312_2837659_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837766_2839188_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839257_2839842_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839944_2840895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841029_2842136_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842146_2843244_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843388_2844594_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844600_2845122_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845118_2845610_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845606_2845858_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845838_2846324_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846459_2849921_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849938_2850823_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850832_2851264_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851510_2852014_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852091_2853492_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853566_2854442_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854438_2855446_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855913_2856219_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856309_2856900_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857090_2858107_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858298_2860635_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860717_2861152_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861250_2862201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862299_2863250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2871275	2928061	4108484	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871275_2872226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873932_2874199_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874906_2875245_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879798_2880401_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880497_2881787_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881844_2882576_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882572_2883376_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883372_2884461_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884457_2885387_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885535_2886681_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886702_2887653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887670_2887829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887983_2891805_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891961_2892630_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892634_2894308_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894326_2895646_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895650_2897966_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898021_2900190_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900186_2905376_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905465_2905780_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906007_2906253_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906347_2906866_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906965_2908171_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908286_2909684_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909800_2910379_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910451_2911843_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912010_2912961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913241_2913862_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913858_2914272_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914268_2915312_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915367_2915556_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915565_2916330_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916420_2917077_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917168_2917927_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917952_2919554_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919754_2920759_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920859_2921123_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921240_2922017_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922607_2923558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925941_2927054_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927110_2928061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	2958447	3002138	4108484	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958447_2959398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959415_2959565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959518_2960415_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962692_2964918_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965082_2966171_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966127_2966781_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966828_2967626_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968157_2969108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969182_2970337_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970393_2971344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971442_2971748_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971776_2972211_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972212_2973457_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973453_2974164_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974178_2975090_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975452_2975857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975853_2976312_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976318_2977227_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977223_2978090_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978076_2978904_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978914_2980042_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981119_2982358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982399_2983662_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983668_2984421_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984472_2984658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984933_2985398_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985429_2986089_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986233_2988342_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988338_2989289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989392_2990013_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990104_2990857_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991991_2993116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993161_2993530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993771_2994722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995757_2996300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996497_2996668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996685_2997636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997632_2998598_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998667_2999504_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000016_3001126_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001187_3002138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	3383132	3436873	4108484	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383132_3384083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384487_3385132_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385156_3385741_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385841_3386459_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386461_3388177_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388173_3388482_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388498_3389116_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389160_3389463_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389563_3390418_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390605_3390830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390999_3391272_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391689_3392097_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392466_3393261_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393361_3394597_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394665_3395682_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395693_3397070_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397066_3398263_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398259_3399798_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399794_3401054_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402994_3403945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404711_3405806_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405798_3407133_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407086_3407770_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407795_3408959_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408955_3409957_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409956_3410829_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410825_3411575_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411571_3412363_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412359_3413499_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413774_3414560_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414593_3415376_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415379_3415769_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416908_3417772_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417807_3418896_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418892_3419843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420196_3423175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424101_3424980_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426928_3427879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427875_3428343_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428385_3429156_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3429176_3429977_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429987_3431397_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431491_3432277_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3432516_3433533_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433640_3434033_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434170_3434851_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434855_3435827_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435922_3436873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	3443028	3502328	4108484	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3443028_3444792_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444903_3445782_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445894_3446710_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446713_3446965_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447049_3448066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448396_3448618_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450978_3451896_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452393_3453602_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453681_3455253_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455370_3456306_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456494_3457439_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458006_3463724_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463729_3464857_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464912_3465539_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3465810_3466827_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466922_3467633_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467629_3468619_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468714_3470346_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470348_3471086_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471241_3472114_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3472382_3473603_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473599_3474259_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474330_3474963_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474992_3475511_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475521_3476631_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476677_3477532_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477533_3478436_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479658_3480609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482365_3483355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3483351_3483510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3483530_3484319_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484315_3485347_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485365_3485929_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485984_3487505_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487768_3488473_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3488480_3489218_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489323_3489698_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489740_3491030_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491026_3492196_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492192_3493032_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493091_3494027_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494039_3494990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495088_3496051_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496082_3496442_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496566_3497469_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497470_3499243_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499277_3500054_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501377_3502328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	3517266	3575339	4108484	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517266_3518217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518345_3519479_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519522_3520428_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520430_3522131_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522127_3523048_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523055_3524033_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524091_3525126_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3527100_3527337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527463_3528327_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528415_3529237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529316_3530054_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3530050_3531043_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3531156_3531819_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531863_3533012_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3535335_3536286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536626_3537577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537675_3538626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538922_3539420_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539462_3541238_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541245_3542112_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542118_3542853_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544022_3544817_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545106_3545697_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545730_3547059_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547133_3548279_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548390_3549389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549351_3549786_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551302_3552187_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552183_3553389_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553385_3554246_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3554358_3556149_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3556189_3556855_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3556855_3557164_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557329_3558616_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3560049_3561000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562951_3564166_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564271_3565261_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565257_3565866_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565878_3566508_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566504_3567125_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567156_3567948_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568799_3569255_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3569273_3570200_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570253_3571540_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572470_3573343_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573339_3574290_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574388_3575339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011189	Bordetella pertussis strain H729 chromosome, complete genome	4108484	4030654	4084086	4108484	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4030654_4031605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031774_4033001_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033200_4034067_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034059_4035022_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035122_4036073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036171_4037122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037220_4038171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038167_4039661_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039657_4042765_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042761_4045830_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045826_4047077_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047257_4048019_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048051_4048702_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4048704_4049544_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049784_4050528_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4050610_4050958_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051055_4051898_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051942_4052830_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052856_4053045_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053142_4054600_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054586_4056113_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056131_4056599_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4056598_4057621_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4057741_4058461_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4058536_4059637_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059638_4060829_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060948_4061965_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062283_4062955_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062951_4063860_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064071_4064719_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4068570_4069647_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069657_4070467_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070556_4071330_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071330_4071495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071512_4072463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4072351_4073374_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4073363_4074518_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4074557_4075970_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4076094_4076961_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076962_4077787_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4077783_4078545_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4078625_4079312_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4079485_4080493_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4080489_4081269_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4081326_4082589_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4083135_4084086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
