The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	27282	70036	4111652	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	77634	136108	4111652	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	164892	225403	4111652	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	233335	286925	4111652	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265572_266910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	555311	614611	4111652	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555311_556262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557585_558362_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558396_560169_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560170_561073_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561197_561557_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561588_562551_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562649_563600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563612_564548_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564607_565447_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565443_566613_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566609_567899_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567941_568316_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568421_569159_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569166_569871_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570134_571655_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571710_572274_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572292_573324_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573320_574109_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574129_574288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574284_575274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577030_577981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579203_580106_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580107_580962_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581008_582118_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582128_582647_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582676_583309_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583380_584040_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584036_585257_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585525_586398_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586553_587291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587293_588925_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589020_590010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590006_590717_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590812_591829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592100_592727_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592782_593910_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593915_599633_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600200_601145_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601333_602269_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602386_603958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604037_605246_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605743_606661_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609021_609243_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609573_610590_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610674_610926_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610929_611745_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611857_612736_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612847_614611_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	620766	674507	4111652	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620766_621717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621812_622784_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622788_623469_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623606_623999_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624106_625123_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625362_626148_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626242_627652_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627662_628463_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628483_629254_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629296_629764_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_062826579.1|629760_630711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632659_633538_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634464_637443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637796_638747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638743_639832_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639867_640731_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641870_642260_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642263_643046_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643079_643865_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644140_645280_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645276_646068_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646064_646814_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646810_647683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647682_648684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648680_649844_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649869_650553_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650506_651841_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651833_652928_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653694_654645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656585_657845_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657841_659380_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659376_660573_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660569_661946_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661957_662974_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663042_664278_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664378_665173_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665542_665950_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666367_666640_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666809_667034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667221_668076_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668176_668479_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668523_669141_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669157_669466_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669462_671178_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671180_671798_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671898_672483_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672507_673152_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673556_674507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	723445	764446	4111652	transposase,protease,tRNA	Mycobacterium_phage(50.0%)	29	NA	NA
WP_010931308.1|723445_724042_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724038_724821_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724893_725985_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931304.1|727735_728782_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728929_732049_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732050_735002_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_005012067.1|735566_736517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|737461_738412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738428_738923_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738926_739184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739727_740639_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740720_741005_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741788_742739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247178.1|743157_745722_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745766_747620_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747952_749524_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750792_750948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750965_751916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|752001_752742_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752968_753916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755303_756254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756271_756484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756447_757263_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757395_758835_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758848_759190_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759244_760900_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761051_762062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762194_762968_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763495_764446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	774373	821991	4111652	transposase,holin,protease,tRNA	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774373_775324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775462_776215_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776453_778178_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778197_779457_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779471_780566_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780562_782689_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782701_783382_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783659_785033_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785034_786054_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786117_787089_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787153_788104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788202_789045_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789044_789380_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789450_790869_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791148_792189_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792268_792520_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792630_793794_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794077_794932_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794928_795819_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795861_796773_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796799_797492_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797506_798487_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798499_800641_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800689_801658_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801648_802317_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802277_803213_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803209_804106_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804102_804825_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804815_804980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805153_805657_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805933_807049_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807191_807656_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807803_808343_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808364_809699_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809712_810018_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810442_811024_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811105_812056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812154_813105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813545_814451_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814506_816111_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816367_817873_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817887_818352_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818641_819592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819609_819798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819754_820285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820284_820596_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821040_821991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1006207	1100244	4111652	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006207_1007158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007260_1007923_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008017_1008188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008540_1009542_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009544_1010741_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010761_1011565_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011645_1011942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011972_1012536_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012576_1013434_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013441_1014191_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014212_1015085_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015113_1015893_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015926_1016724_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019378_1019771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019764_1020625_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020628_1021591_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022367_1023057_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023917_1024868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025217_1026087_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026157_1026853_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026842_1027352_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027348_1028569_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028516_1029419_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030305_1031592_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031630_1033004_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033042_1033744_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034042_1035032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035132_1035594_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035609_1036158_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036299_1037775_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037880_1038972_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038975_1039758_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039767_1040556_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041681_1042116_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042112_1043123_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043166_1044093_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044379_1044748_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044800_1044947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044964_1045915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045959_1048386_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048434_1049127_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049199_1050399_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050416_1051322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051437_1052367_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052392_1053739_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053766_1054516_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054529_1055312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055504_1056455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056516_1057626_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058138_1058975_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059044_1060010_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060006_1060957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060974_1061145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061342_1061885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062920_1063871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064112_1064481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064526_1065651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066785_1067538_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067629_1068250_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068353_1069304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069300_1071409_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071553_1072213_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072244_1072709_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072984_1073170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073221_1073974_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073980_1075243_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075284_1076523_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077600_1078728_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078738_1079566_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079552_1080419_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081785_1082190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082281_1083232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083249_1083414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083601_1084513_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084527_1085238_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085234_1086479_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086480_1086915_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086943_1087249_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087347_1088298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088354_1089509_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089583_1090534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091065_1091863_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091910_1092564_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092520_1093609_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093773_1095999_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098276_1099173_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099126_1099276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099293_1100244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1130630	1201601	4111652	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1130630_1131581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131637_1132750_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135133_1136084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136674_1137451_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137568_1137832_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137932_1138937_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139137_1140739_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140764_1141523_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141614_1142271_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142361_1143126_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143135_1143324_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143379_1144423_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144419_1144833_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144829_1145450_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145730_1146681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146848_1148240_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148312_1148891_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149007_1150405_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150520_1151726_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151825_1152344_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152438_1152684_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152911_1153226_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153315_1158505_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158501_1160670_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160725_1163041_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163045_1164365_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164383_1166057_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166061_1166730_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166886_1170708_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170862_1171021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171038_1171989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172010_1173156_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173304_1174234_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174230_1175319_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175315_1176119_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176115_1176847_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176904_1178194_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178290_1178893_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183446_1183785_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184492_1184759_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186465_1187416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187412_1188744_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190004_1192005_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191997_1192639_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192635_1193043_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193039_1193840_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193914_1194619_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194650_1195445_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195441_1196392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196490_1197441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197539_1197974_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198056_1200393_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200584_1201601_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1248995	1329870	4111652	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1248995_1249946_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249942_1250893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251153_1252182_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252261_1253560_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253556_1254138_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254450_1258497_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258737_1266399_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266395_1267346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268485_1268959_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269098_1269719_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269854_1270655_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270709_1271801_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271822_1272266_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272294_1272927_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273037_1273454_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273446_1274139_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274245_1274620_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274696_1275506_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275601_1276546_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276584_1277556_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277646_1278084_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278142_1279024_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280027_1280888_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280920_1282303_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282299_1283319_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283691_1284186_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284193_1284934_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285014_1286619_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286658_1287447_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288649_1289738_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290618_1291431_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291443_1291752_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291869_1293600_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293601_1294747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1294876_1295545_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295666_1296134_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296269_1297652_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297648_1298773_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298769_1301406_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301821_1302772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306518_1307130_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307352_1308813_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308909_1310502_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310855_1311113_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311114_1312455_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312550_1313240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313252_1314683_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316407_1317229_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317239_1318811_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318839_1319817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319843_1320647_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320643_1321438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321445_1322681_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322673_1323108_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323857_1324808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325429_1327157_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327268_1328627_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1328683_1328902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328919_1329870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1744265	1792280	4111652	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1744265_1745216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1745314_1747915_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1748021_1749026_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1749134_1750475_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1750515_1751544_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1751739_1752285_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1752281_1752842_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1752940_1753891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1753928_1754516_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1754533_1754917_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1756276_1757569_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1757703_1758744_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1758841_1759858_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1760125_1760773_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1760898_1761657_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1761641_1762421_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1762438_1763323_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1763319_1764099_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1764203_1764803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1765091_1765844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1765962_1767363_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1767386_1767785_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1767960_1768161_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1768299_1769028_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1769161_1770577_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1770580_1771444_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1771456_1772206_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1772388_1774404_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1774385_1775054_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1775828_1776779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1776877_1777828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1777976_1778315_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1778372_1778534_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1778565_1778766_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1779031_1781605_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1781675_1784225_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1786775_1787264_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1787355_1788507_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1788560_1789382_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1789420_1790650_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1790778_1791219_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1791329_1792280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1853842	1913112	4111652	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1853842_1854793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1854917_1855727_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1855927_1856878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1858151_1859369_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1860425_1861328_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1861404_1862277_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1862407_1862776_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1862833_1863880_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1864075_1865332_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1865336_1866674_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1866823_1867780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1867882_1868815_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1868930_1869251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1869243_1869603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1869650_1871225_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1871277_1872222_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1872239_1873070_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1873062_1874697_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1874693_1876049_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1876955_1878533_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1878536_1879811_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1879908_1880283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1881998_1883132_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1883169_1883775_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1883771_1884590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1884661_1887286_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1887272_1887527_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1887593_1888175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1888478_1888739_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1888904_1889528_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1889527_1890301_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1890297_1891506_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1891531_1892005_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1892078_1893029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1893127_1894078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1894176_1895526_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1896291_1897047_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1897139_1900022_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1900344_1900770_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1900797_1901946_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1901942_1902449_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1902455_1903751_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1903809_1905096_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1905097_1905736_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|1905738_1906899_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1906925_1908281_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1908284_1909355_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1909493_1909730_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1909817_1910924_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1910889_1912194_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1912212_1913112_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1923352	1980849	4111652	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1923352_1924303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1924502_1925588_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1925603_1926365_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1926361_1927321_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1927383_1927884_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1927916_1928660_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1928755_1928995_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1929008_1929161_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1929246_1930737_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1930828_1931767_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1931763_1931940_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1931942_1932605_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1934226_1934370_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1934366_1935341_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1935235_1935490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1935507_1936458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1936454_1937729_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1937832_1939026_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1939022_1939676_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1939672_1941109_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1941096_1941456_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1942270_1942411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1942428_1943379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1944424_1946290_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1946547_1948068_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1948155_1948806_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1949754_1951050_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1951071_1951956_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1952054_1952930_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1952919_1953276_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1953406_1954381_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1954510_1954690_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1954787_1955312_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1955322_1956159_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1956271_1956643_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1956639_1957191_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1957206_1958898_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1958946_1959627_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1959874_1960339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1960508_1961438_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1961450_1962098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1962171_1963989_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1964072_1965023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1965675_1966626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1966644_1966992_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1967020_1968460_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1968478_1968874_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1969048_1969657_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1969669_1970488_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1970439_1971414_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1971442_1972504_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1972500_1974717_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1974730_1975189_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1975346_1975691_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1975847_1976753_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1976839_1977853_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1979832_1980849_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	1996405	2060774	4111652	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1996405_1997356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1997577_1998528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1998626_1999592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1999729_2000629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2003223_2004711_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2004721_2005918_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2005990_2007310_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2007306_2008182_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2008212_2009361_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2009378_2009693_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2009714_2010437_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2010436_2011255_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2011259_2011787_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2011792_2013049_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2013407_2014547_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2014624_2015497_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2016367_2017318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2017277_2017913_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2018272_2019595_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2019913_2020735_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2022159_2022732_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2022771_2024601_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2024563_2025622_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2025659_2026121_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2026205_2026952_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2028442_2031673_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2031739_2033071_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2033323_2033698_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2033800_2034979_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2034989_2035580_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2035690_2036497_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2036522_2037317_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2038317_2039292_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2039450_2039963_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2040119_2041091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2042835_2043642_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2043638_2044940_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2044890_2045655_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2045768_2046539_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2046623_2047811_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2047883_2048258_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2048358_2049621_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2049617_2050475_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2050647_2051649_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2052100_2053051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2054566_2055766_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2056134_2056371_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2056434_2056602_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2056715_2058521_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2058774_2059725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2059823_2060774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2247242	2308590	4111652	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2247242_2248193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2248309_2249029_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2249201_2250188_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2250188_2250671_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2250674_2251958_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2251954_2252893_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2252889_2254599_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2254608_2255856_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2257466_2258756_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2259893_2260652_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2261328_2262072_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2262146_2262887_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2263082_2263919_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2263969_2264740_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2264789_2265842_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2265838_2266465_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2266461_2267496_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2267674_2268691_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2268789_2269740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2272480_2273770_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2273888_2274326_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2274369_2275578_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2275724_2276189_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2276212_2277163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2278147_2278921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2278917_2279916_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2280000_2280777_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2280932_2282537_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2282917_2284042_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2284168_2284792_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2284788_2286690_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2286738_2287533_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2287545_2288547_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2288543_2289050_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2289042_2289891_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2289988_2290531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2290574_2291525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2291680_2292007_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2292003_2292288_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2292284_2292764_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2292760_2294389_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2294385_2294730_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2294729_2297663_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2298821_2299772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2299870_2300167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2300273_2301191_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2301195_2301909_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2301922_2302894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2304613_2304994_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2304997_2306185_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2306608_2307346_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2307639_2308590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2329381	2400535	4111652	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2329381_2330332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2330884_2332510_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2332559_2333594_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2333596_2334943_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2334939_2336454_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2336444_2337455_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2337928_2338870_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2338878_2339847_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2341386_2342355_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2342532_2343522_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2343568_2344327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2344516_2345254_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2345352_2346303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2346487_2347270_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2347263_2347965_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2348204_2348807_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2350133_2351084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2351080_2352637_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2352629_2353403_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2353461_2354412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2354493_2355669_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2355682_2357740_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2357736_2358762_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2358773_2360063_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2360085_2361183_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2361179_2362070_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2362066_2364151_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2364182_2365352_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2365393_2366134_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2366133_2366904_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2367228_2367396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2367759_2368545_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2368571_2370656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2370823_2372779_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2373102_2373603_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2373701_2375228_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2375365_2376253_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2376267_2377221_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2377272_2379363_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2379378_2379765_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2382458_2383262_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2384555_2385458_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2385522_2386299_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2386620_2387670_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2387793_2389464_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2389468_2390263_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2390361_2391312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2391331_2392237_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2392314_2393013_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2393172_2394117_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2394126_2395614_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2395613_2396681_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2396744_2398157_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2398342_2399563_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2399584_2400535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2497412	2556193	4111652	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2497412_2499362_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499749_2500526_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500531_2500924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501345_2502296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502292_2503390_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503421_2504372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506153_2507395_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507406_2508180_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508206_2509157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509636_2510293_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510307_2511975_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511977_2512607_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512818_2513913_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514057_2514870_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514873_2516577_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516627_2517758_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517944_2519021_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519102_2519753_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519767_2521171_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521454_2522273_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522269_2522974_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523873_2524989_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525022_2525397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525419_2526577_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526589_2526823_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527457_2530427_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530441_2530651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530802_2531432_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531428_2533519_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533542_2534223_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534219_2534780_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534786_2535884_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536036_2536630_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536626_2537919_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537932_2538475_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538484_2539321_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539354_2540416_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540457_2541510_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541525_2541828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541969_2542920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542937_2543102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543098_2544793_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544789_2545875_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545922_2546822_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546832_2547477_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548498_2551741_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551751_2552906_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553132_2554095_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554193_2555144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555242_2556193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2609779	2676279	4111652	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2609779_2610730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2611099_2611672_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2611674_2612685_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2612677_2613178_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2613188_2613530_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2613541_2614333_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2614349_2614619_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2614641_2615430_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2615476_2616493_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2616709_2618152_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2618330_2619950_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2620070_2621891_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2621969_2623502_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2623535_2625182_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2625251_2626274_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2626291_2627425_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2627427_2628117_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2628116_2628902_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2628945_2629710_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2629748_2631170_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2631235_2631940_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2631987_2632407_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2632419_2632827_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2633010_2633721_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2633847_2634138_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2634155_2634638_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2639143_2640298_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2640603_2641620_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2641866_2642655_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2642721_2643402_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2643398_2644169_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2644267_2645218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2645273_2646191_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2646201_2647380_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2647399_2648395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2649983_2650592_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2650579_2651620_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2651637_2652600_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2652596_2653790_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2653786_2654584_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2654609_2655596_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2655614_2657654_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2657855_2658536_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2658549_2659461_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2659457_2660036_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2660174_2661080_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2661087_2664507_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2664494_2667095_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2668050_2668683_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2669076_2669835_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2669831_2671034_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2671221_2672172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2673079_2674225_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2674211_2674967_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2675083_2675263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2675328_2676279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2875667	2948992	4111652	transposase,protease,tRNA	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2875667_2877023_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2878501_2879224_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2879278_2880262_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2880391_2881342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2881338_2882241_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2882328_2883087_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2883099_2884191_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2884288_2885716_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2885945_2887160_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2887205_2890076_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2892486_2892975_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2893100_2895797_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2895951_2898234_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2898407_2899031_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2899129_2900080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900126_2900681_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900748_2901594_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901663_2902632_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2902631_2903495_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2906327_2910254_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2910989_2914220_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2914501_2915329_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2915362_2916058_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2916050_2917331_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2917340_2918318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2918299_2920000_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2920102_2921206_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2921236_2921992_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2921998_2923519_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923561_2923864_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923860_2924493_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924571_2926437_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926433_2927228_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927256_2928372_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929276_2930155_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930154_2930979_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2931146_2932097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932309_2935159_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935140_2935869_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2936009_2937473_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937469_2937841_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937858_2939172_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939208_2939667_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2939621_2939762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2939779_2940730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|2941310_2942018_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|2942376_2943363_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|2943502_2944516_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|2944512_2945463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945614_2946217_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946235_2946868_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946912_2947164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947105_2948992_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	2960717	3011379	4111652	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2960717_2961668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961694_2962159_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963365_2965654_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965770_2966643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966685_2967840_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967874_2968705_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968788_2970333_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970375_2970735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970736_2971150_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971190_2971508_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971592_2972309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972572_2973994_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|2975298_2976249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2978189_2979206_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2979541_2980183_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2980273_2981710_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2981867_2982941_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2982937_2984074_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2984218_2984563_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2984629_2986510_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2986559_2987495_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_023853536.1|2987827_2988844_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2989781_2991209_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2991205_2992228_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2992217_2992691_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2992831_2993719_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2993715_2995359_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2995355_2996405_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2997193_2998210_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2998309_2998942_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2998950_2999340_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2999392_3000445_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3001308_3003015_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3003088_3003589_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3003603_3005661_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3005687_3005981_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3006082_3007030_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3007042_3007918_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3008038_3008599_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3008633_3008957_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3009392_3010130_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3010428_3011379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	3032330	3104824	4111652	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3032330_3033281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3033323_3034499_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3034720_3036511_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3036523_3038185_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3038197_3040903_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3041195_3042950_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3042946_3043573_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3043569_3044421_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3044496_3046611_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3046797_3047412_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3047557_3047809_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3047878_3049261_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3049257_3052437_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3053244_3054162_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3054213_3054945_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3055004_3055577_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3057085_3058102_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3058239_3059289_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3059393_3060344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3060439_3061165_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3061375_3061756_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3062061_3062934_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3062941_3063322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3063475_3064750_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3066237_3067146_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3067943_3069008_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3070844_3071846_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3072068_3072710_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3072792_3074619_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3074862_3075792_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3075791_3076541_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3076612_3077527_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3077546_3078692_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3078752_3079664_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3079744_3080695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3080793_3081378_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3081412_3082402_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3082398_3083340_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3083336_3084557_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3084599_3084914_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3085105_3085465_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3085466_3087182_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3087369_3088041_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3088055_3089384_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3089380_3090280_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3090366_3091452_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3091444_3092578_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3092577_3095259_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3095629_3096211_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3096336_3097062_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3097058_3097736_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3097951_3099133_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3099905_3100088_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3100117_3101068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3101197_3101590_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3101866_3102778_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3102902_3103877_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3103873_3104824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	3118331	3171849	4111652	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3118331_3119282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3119394_3119646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3120151_3121270_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3121389_3121602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3121761_3121983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3122035_3122986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3124162_3125533_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3125565_3126357_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3126369_3127425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3127450_3128326_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3128431_3128680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3128714_3130169_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3130165_3130687_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3130715_3132068_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3132291_3135180_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3137324_3138626_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3138640_3139357_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3139638_3140319_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3140330_3140498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3140606_3140753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3140846_3141506_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3141904_3143737_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3143733_3144684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3145847_3147563_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3147573_3148065_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3148137_3149154_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3149321_3150101_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3150119_3150647_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3150940_3151210_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3151300_3153460_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3153580_3154300_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3154296_3155247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3155387_3156605_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3156598_3157210_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3157843_3158821_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3158964_3159711_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3159732_3160179_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3160966_3163198_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3163220_3164021_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3164302_3165535_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3165645_3166635_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3166665_3168054_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3169652_3170636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3170832_3171849_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	3236307	3306359	4111652	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3236307_3237258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3237254_3238274_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3238283_3240992_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3241139_3241796_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3241894_3242845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3242992_3243886_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3244085_3245780_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3245814_3246741_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3246809_3247907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3247925_3248789_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3248800_3249583_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3249579_3250698_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3250694_3252227_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3252267_3253275_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3253419_3254142_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3254157_3255180_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3255496_3256231_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3256315_3258061_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3258057_3258810_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3258854_3259811_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3259899_3260466_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3260473_3261334_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3261363_3262092_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3262123_3262807_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3263644_3264559_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3264623_3265532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3265622_3267047_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3267048_3268371_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3268367_3270506_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3270583_3275704_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3275804_3276113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3276182_3276740_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3276755_3278237_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3280407_3281745_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3281779_3283777_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3283794_3285843_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3285973_3286840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3287108_3288074_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3288188_3289337_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3289761_3290073_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3290106_3290367_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3290516_3291650_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3291720_3292857_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3293022_3293817_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3293879_3294323_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3294438_3295389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3295490_3295919_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3295991_3298187_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3298408_3299359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3299457_3300408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3300367_3300892_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3301023_3301995_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3302114_3304559_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3304574_3305165_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3305408_3306359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	3309567	3414919	4111652	transposase,tRNA,protease,tail,terminase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
WP_005013747.1|3309567_3310518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3310518_3311088_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3311155_3311971_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3312137_3313757_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3313835_3314777_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3314776_3315661_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3315664_3317317_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3317356_3318754_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3318795_3320175_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3320214_3320433_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3320773_3321646_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3321805_3322756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3322854_3323805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3324536_3324914_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3324898_3325600_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3325743_3326436_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3326435_3327539_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3327648_3330021_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3330017_3331577_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3331601_3332399_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3332430_3333576_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3333680_3335123_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3335125_3336355_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3338492_3339443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3340572_3341130_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3341105_3341456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3341624_3342419_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3342415_3343465_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3343464_3344154_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3344240_3344738_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3344769_3346086_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3346102_3347077_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3347113_3347572_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3347571_3348252_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3348254_3348683_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3348735_3350466_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3350531_3351104_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3351084_3351771_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3352126_3352798_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3353126_3353348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3353347_3353629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3353625_3354141_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3354140_3354692_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3354670_3354913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3354917_3355730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3355729_3355993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3356033_3356231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3356211_3356628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3356632_3360589_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3360581_3360971_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3360967_3361501_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3361568_3361928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3361937_3364550_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3364575_3364866_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3364883_3365213_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3365222_3365741_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3365995_3366496_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3366503_3366926_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3366922_3367321_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3367317_3367713_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3367712_3367913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3367914_3368397_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3368459_3368711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3369385_3370336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3370764_3371367_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3371489_3371732_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3371737_3372793_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3372821_3374240_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3374242_3375520_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3375506_3375992_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3376631_3377582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3377599_3377821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3377838_3378528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3378520_3378772_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3379326_3379938_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3380009_3380216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3380467_3381418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3381516_3382590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3382757_3383552_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3383591_3384116_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3384108_3385851_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3386060_3386819_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3386821_3387529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3387545_3388427_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3388437_3389196_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3389164_3389920_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3389989_3391408_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3391429_3392080_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3392213_3392549_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3392637_3393588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3393664_3395485_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3395489_3396563_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3396685_3397654_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3397727_3398639_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3398657_3399230_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3399310_3399859_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3399858_3401448_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3401517_3401757_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3401797_3402823_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3402888_3404070_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3404166_3404619_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3404628_3405969_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3406285_3407323_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3407704_3408064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3408147_3409089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3409163_3410114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3410407_3411502_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3411583_3412465_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3412486_3413326_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3413401_3414919_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011198	Bordetella pertussis strain I228 chromosome, complete genome	4111652	4033823	4087255	4111652	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4033823_4034774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034943_4036170_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036369_4037236_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037228_4038191_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038291_4039242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039340_4040291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040389_4041340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041336_4042830_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042826_4045934_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045930_4048999_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048995_4050246_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4050426_4051188_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4051220_4051871_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4051873_4052713_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052953_4053697_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4053779_4054127_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054224_4055067_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055111_4055999_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056025_4056214_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056311_4057769_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057755_4059282_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059300_4059768_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4059767_4060790_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4060910_4061630_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4061705_4062806_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062807_4063998_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064117_4065134_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065452_4066124_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066120_4067029_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067240_4067888_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4071739_4072816_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072826_4073636_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073725_4074499_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4074499_4074664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995294.1|4074681_4075632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077598841.1|4075520_4076543_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4076532_4077687_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4077726_4079139_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4079263_4080130_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4080131_4080956_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4080952_4081714_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4081794_4082481_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4082654_4083662_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4083658_4084438_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4084495_4085758_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929969.1|4086304_4087255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
