The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	27282	70036	4104580	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	77634	136108	4104580	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	164891	225402	4104580	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176365_176893_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176984_177800_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189528_190002_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	233335	286923	4104580	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	390856	448365	4104580	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	589370	650560	4104580	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590817_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592703_593195_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593213_594287_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594333_595437_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595512_596133_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596153_596663_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596717_596969_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597032_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619569_619734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622996_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638046_639480_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646242_647124_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	655884	702075	4104580	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665119_666070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668787_669543_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672856_674599_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677289_678240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678491_678698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678769_679381_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679935_680187_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680179_680869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680886_681108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681125_682076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682715_683201_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683187_684465_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688371_689322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690794_690995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691781_692204_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692966_693485_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693494_693824_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693841_694132_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697206_697740_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697736_698126_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	708241	762171	4104580	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712621_713938_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719264_720215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722352_723582_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723584_725027_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725131_726277_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726308_727106_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727130_728690_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728686_731059_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731168_732272_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732271_732964_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733107_733809_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733793_734171_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734902_735853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736012_736885_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737225_737444_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737483_738863_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738904_740302_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740341_741994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741997_742882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742881_743823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743901_745521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745687_746503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746570_747140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747140_748091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749876_751142_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751299_752250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752493_753084_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753099_755544_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755663_756635_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756766_757291_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757250_758201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758422_760618_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760690_761119_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761220_762171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	853049	902313	4104580	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853049_854000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854017_854572_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854573_855008_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855004_855439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855422_856226_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856242_857058_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857054_857870_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858016_858718_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858745_860704_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010931070.1|860786_861737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861957_862626_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862749_863856_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863868_866982_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866978_868472_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868486_869158_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869201_869696_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869836_870484_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870587_872636_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872632_874645_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874670_876005_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876113_877106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877172_879257_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879281_880253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880381_881413_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881416_882568_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882738_883662_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883739_884564_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884760_885777_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885973_886957_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888555_889944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889974_890964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891074_892307_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892588_893389_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893411_895643_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896430_896877_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896898_897645_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897788_898766_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899399_900011_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900004_901222_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901362_902313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	911925	976865	4104580	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911925_912876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912872_914705_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915103_915763_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915856_916003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916111_916279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916290_916971_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917252_917969_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917983_919285_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921429_924318_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924541_925894_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925922_926444_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926440_927895_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927929_928178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928283_929159_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929184_930240_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930252_931044_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931076_932447_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933623_934574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934626_934848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935007_935220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935339_936458_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936963_937215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937327_938278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938274_938658_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938712_940527_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940676_941504_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941549_942530_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942526_942739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942735_943917_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944080_944815_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944816_947429_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947564_949478_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950093_950504_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950601_951687_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951785_952736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952732_953707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953831_954743_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955019_955412_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955541_956492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956521_956704_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957476_958658_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958873_959551_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959547_960273_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960398_960980_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961350_964032_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964031_965165_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965157_966243_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966329_967229_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967225_968554_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968568_969240_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969427_971143_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971144_971504_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971695_972010_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972052_973273_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973269_974211_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974207_975197_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975231_975816_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975914_976865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	996265	1047231	4104580	transposase	Enterococcus_phage(25.0%)	41	NA	NA
WP_005012067.1|996265_997216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997320_998370_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998507_999524_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001032_1001605_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001664_1002396_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002447_1003365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004172_1007352_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008801_1009053_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009198_1009813_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1009999_1012114_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012189_1013041_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013037_1013664_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013660_1015415_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015707_1018413_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018425_1020087_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020099_1021890_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022111_1023287_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023329_1024280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024378_1025119_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025313_1027350_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027367_1028378_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028495_1029689_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029718_1030492_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030488_1031679_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031704_1032643_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032639_1034988_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035142_1035784_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035887_1037021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037113_1037266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037297_1037846_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037864_1038350_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038527_1039466_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039468_1039786_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039831_1040776_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042456_1043107_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043160_1043496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043492_1044353_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044369_1044651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044724_1044988_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045231_1046182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1059449	1117112	4104580	protease,transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_023853536.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061254_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070164_1071100_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071149_1073030_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073096_1073441_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1079569_1080145_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1080083_1082831_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082897_1084319_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084582_1085299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085383_1085701_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085741_1086155_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086156_1086516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086558_1088103_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088186_1089017_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089051_1090206_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1090248_1091121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091237_1093526_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094732_1095197_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095223_1096174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096191_1096329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096541_1097318_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097362_1098220_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098241_1099258_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099392_1100433_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100627_1102709_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102944_1104438_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104668_1105463_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105683_1107042_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107038_1107881_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107899_1109786_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109727_1109979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110023_1110656_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110674_1111277_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111428_1112379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112959_1113667_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114025_1115012_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115151_1116165_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116161_1117112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1317183	1385670	4104580	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317183_1318134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318902_1319541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320430_1320877_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320958_1321660_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321660_1322428_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322424_1323663_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323662_1324589_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324691_1325807_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325822_1326773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327126_1327708_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327704_1328538_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328748_1330062_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1330238_1331120_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331139_1331991_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332043_1333132_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1333242_1334370_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334604_1335216_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335314_1336265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336486_1336864_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337011_1337509_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337505_1338033_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338166_1338982_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338994_1340176_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340223_1341117_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1341243_1341714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341839_1342667_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342695_1343472_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343468_1343744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343758_1344223_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1344234_1344936_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345045_1345546_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345628_1346807_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348434_1348770_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348957_1350406_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350463_1350808_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350914_1351454_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351546_1352497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1352514_1352754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353235_1353667_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1353848_1354253_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355489_1355813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355815_1356703_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356735_1357161_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357232_1357586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357825_1358332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358370_1359702_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359761_1360577_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360573_1361428_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364490_1367034_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368400_1370155_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370151_1372272_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372276_1374472_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374468_1377810_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380612_1381563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381628_1381808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381924_1382680_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382666_1383812_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384719_1385670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1446161	1501649	4104580	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446161_1447112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448313_1448760_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448752_1450228_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450224_1450980_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450972_1451983_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451972_1453649_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453961_1454294_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454307_1454703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454712_1455039_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455035_1455362_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455288_1456311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456307_1456658_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456705_1457134_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457141_1458515_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458655_1459033_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459295_1460603_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460663_1461494_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461490_1461979_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462020_1463541_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463584_1464061_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464864_1467462_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467491_1468313_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469039_1469789_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469972_1470851_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470948_1471665_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471679_1472240_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472406_1473171_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473190_1474048_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474044_1475244_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475283_1476618_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476670_1479007_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479132_1479696_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479704_1480796_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480867_1481323_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481323_1482118_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482114_1483296_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483282_1483888_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483884_1484658_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484669_1485497_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485658_1488022_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488089_1488809_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488932_1489358_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1489392_1490343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490460_1491387_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491452_1492610_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492590_1493058_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493205_1494156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494172_1494607_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494596_1494947_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495143_1496298_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1496294_1497467_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497514_1498408_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498453_1498891_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498950_1499640_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499649_1500600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500698_1501649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1794219	1842234	4104580	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930048.1|1794219_1795170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1795268_1796219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796317_1798918_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1799024_1800029_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1800137_1801478_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801518_1802547_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802742_1803288_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803284_1803845_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803943_1804894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804931_1805519_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805536_1805920_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807279_1808572_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808706_1809747_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809844_1810861_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1811128_1811776_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811901_1812660_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812644_1813424_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813441_1814326_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814322_1815102_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1815206_1815806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816094_1816847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816965_1818366_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818389_1818788_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818963_1819164_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819302_1820031_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820164_1821580_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821583_1822447_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822459_1823209_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823391_1825407_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1825388_1826057_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826831_1827782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827930_1828269_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828326_1828488_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828519_1828720_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828985_1831559_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831629_1834179_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836729_1837218_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837309_1838461_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838514_1839336_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839374_1840604_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840732_1841173_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841283_1842234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1845627	1907881	4104580	protease,transposase,tRNA	Lake_Baikal_phage(21.43%)	54	NA	NA
WP_010930542.1|1845627_1848489_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848478_1849444_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1849503_1851498_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1851596_1852547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1852543_1852918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1853179_1854388_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1854384_1856685_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1856737_1859350_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1859709_1861635_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1861631_1862528_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1862534_1863674_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1863673_1864495_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1866065_1866395_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1866777_1868034_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1868108_1868390_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1868431_1868752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1869058_1869262_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1869345_1869912_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1870257_1870458_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1870569_1871130_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1871326_1872637_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1872639_1873293_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1873397_1874702_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1874890_1877344_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1877467_1878418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1878645_1879869_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1879934_1880906_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1880972_1881374_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1881387_1882191_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1882187_1882619_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1882615_1883773_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1883794_1884571_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1886783_1887452_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1887444_1888086_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1888120_1888852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1888869_1889082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1889652_1890603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1892160_1892811_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1892939_1894142_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1894219_1896256_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1896508_1897000_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1897215_1897728_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1897745_1898957_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1898994_1899405_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1899406_1899730_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1899732_1900245_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1900374_1902237_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1902246_1902588_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1902587_1902782_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1902906_1903800_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1903796_1904747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904871_1905681_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1905881_1906832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1906930_1907881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1923920	1977404	4104580	protease,transposase,tRNA	Klosneuvirus(22.22%)	45	NA	NA
WP_005012067.1|1923920_1924871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930583.1|1925114_1926749_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1926745_1928101_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1929007_1930585_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1930588_1931863_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1931960_1932335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1934050_1935184_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1935221_1935827_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1935823_1936642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1936713_1939338_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1939324_1939579_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1939645_1940227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1940530_1940791_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1940956_1941580_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1941579_1942353_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1942349_1943558_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1943583_1944057_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1944130_1945081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1945179_1946130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1946228_1947578_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1948343_1949099_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1949191_1952074_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1952396_1952822_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1952849_1953998_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1953994_1954501_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1954507_1955803_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1955861_1957148_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1957149_1957788_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1957790_1958951_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1958977_1960333_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1960336_1961407_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1961545_1961782_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1961869_1962976_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1962941_1964246_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1964264_1965164_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1965347_1966505_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1966581_1967877_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1967990_1968530_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1968807_1969020_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1969039_1971070_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_010930783.1|1971755_1974038_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1974447_1974747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1975031_1975445_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1975404_1976355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976453_1977404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	1988608	2049402	4104580	transposase	Klosneuvirus(16.67%)	58	NA	NA
WP_005012067.1|1988608_1989559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1989555_1990830_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1990933_1992127_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1992123_1992777_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1992773_1994210_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1994197_1994557_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1995371_1995512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1996476_1998342_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1998599_2000120_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2000207_2000858_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2001806_2003102_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2003123_2004008_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2004106_2004982_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2004971_2005328_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2005458_2006433_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2006562_2006742_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2006839_2007364_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2007374_2008211_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2008323_2008695_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2008691_2009243_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2009258_2010950_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2010998_2011679_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2011926_2012391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012560_2013490_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2013502_2014150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2014223_2016041_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2016124_2017075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2017727_2018678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2018696_2019044_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2019072_2020512_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2020530_2020926_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2021100_2021709_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2021721_2022540_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2022491_2023466_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2023494_2024556_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2024552_2026769_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2026782_2027241_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2027398_2027743_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2027899_2028805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2028891_2029905_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2031884_2032901_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2033043_2034396_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2034570_2034867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2036004_2036955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2037440_2037617_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2038301_2039273_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2039276_2040131_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2040149_2040971_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2041002_2041797_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2041845_2042451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2042408_2043242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2043527_2045033_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2045074_2045857_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2045926_2046373_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2046369_2047596_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2047588_2047993_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2048152_2048455_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2048451_2049402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2299288	2360636	4104580	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2299288_2300239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2300355_2301075_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2301247_2302234_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2302234_2302717_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2302720_2304004_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2304000_2304939_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2304935_2306645_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2306654_2307902_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2309512_2310802_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2311939_2312698_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2313374_2314118_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2314192_2314933_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2315128_2315965_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2316015_2316786_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2316835_2317888_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2317884_2318511_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2318507_2319542_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2319720_2320737_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2320835_2321786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2324526_2325816_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2325934_2326372_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2326415_2327624_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2327770_2328235_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2328258_2329209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2330193_2330967_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2330963_2331962_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2332046_2332823_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2332978_2334583_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2334963_2336088_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2336214_2336838_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2336834_2338736_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2338784_2339579_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2339591_2340593_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2340589_2341096_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2341088_2341937_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2342034_2342577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2342620_2343571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2343726_2344053_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2344049_2344334_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2344330_2344810_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2344806_2346435_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2346431_2346776_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2346775_2349709_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2350867_2351818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2351916_2352213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2352319_2353237_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2353241_2353955_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2353968_2354940_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2356659_2357040_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2357043_2358231_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2358654_2359392_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2359685_2360636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2381427	2452581	4104580	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2381427_2382378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2382930_2384556_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2384605_2385640_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2385642_2386989_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2386985_2388500_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2388490_2389501_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2389974_2390916_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2390924_2391893_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2393432_2394401_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2394578_2395568_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2395614_2396373_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2396562_2397300_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2397398_2398349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2398533_2399316_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2399309_2400011_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2400250_2400853_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2402179_2403130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2403126_2404683_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2404675_2405449_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2405507_2406458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2406539_2407715_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2407728_2409786_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2409782_2410808_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2410819_2412109_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2412131_2413229_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2413225_2414116_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2414112_2416197_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2416228_2417398_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2417439_2418180_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2418179_2418950_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2419274_2419442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2419805_2420591_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2420617_2422702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2422869_2424825_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2425148_2425649_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2425747_2427274_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2427411_2428299_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2428313_2429267_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2429318_2431409_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2431424_2431811_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2434504_2435308_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2436601_2437504_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2437568_2438345_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2438666_2439716_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2439839_2441510_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2441514_2442309_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2442407_2443358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2443377_2444283_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2444360_2445059_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2445218_2446163_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2446172_2447660_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2447659_2448727_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2448790_2450203_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2450388_2451609_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2451630_2452581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2536782	2599083	4104580	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2536782_2537733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2537831_2538602_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2538598_2539270_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2539266_2539908_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2539920_2540841_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2541001_2542162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2542203_2543154_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2543818_2544019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2544141_2545836_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2545957_2546227_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2546342_2546741_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2546751_2547708_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2547844_2548390_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2548410_2550360_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2550747_2551524_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2551529_2551922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2552343_2553294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2553290_2554388_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2554419_2555370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2557151_2558393_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2558404_2559178_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559204_2560155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2560253_2561036_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561124_2562351_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2563076_2564462_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2564480_2565086_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565082_2566939_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2566935_2567736_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2567750_2568944_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569011_2569986_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570108_2571332_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2571442_2573647_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2573941_2574601_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2574608_2574815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575153_2575909_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2575924_2576086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2576179_2576695_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2576967_2577285_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2577229_2577874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2577999_2579355_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2579401_2580742_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2580843_2581476_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2581475_2583836_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2583877_2584837_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2584823_2585510_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2585506_2585839_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2585954_2586905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2586901_2588968_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2588967_2589240_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2589934_2590024_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2590023_2591808_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2591831_2593997_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2594007_2594607_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2597428_2598124_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2598132_2599083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2685200	2725869	4104580	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2685200_2686151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2686261_2686444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686543_2687140_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687323_2688415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688914_2689325_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2689383_2689725_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2689730_2692148_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2692160_2693183_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2693257_2693617_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693632_2693830_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2694165_2695116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695310_2695760_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695756_2696707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696817_2698266_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2698380_2698662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698765_2699716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699960_2700674_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700796_2701024_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701318_2701957_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2702065_2703100_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2703096_2704047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704462_2704987_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704990_2705260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705458_2706520_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706603_2708238_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2708239_2709043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2709071_2710031_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2710034_2711549_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711585_2712590_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2713021_2713492_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713527_2714139_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2714169_2714793_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714873_2716406_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2716440_2717682_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717725_2718757_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718753_2719923_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2719916_2720597_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2720758_2721601_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721763_2722735_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722906_2723785_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723807_2724878_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724918_2725869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2729980	2812115	4104580	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2729980_2730931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2731680_2732115_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2732107_2733343_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2733350_2734145_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2734141_2734945_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2734971_2735949_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2735977_2737549_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2737559_2738381_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2740105_2741536_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2741548_2742238_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2742333_2743674_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2743675_2743933_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2744286_2745879_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2745975_2747436_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2747658_2748270_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2752016_2752967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2753382_2756019_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2756015_2757140_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2757136_2758519_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2758654_2759122_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2760040_2761186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2761187_2762918_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2763035_2763344_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2763356_2764169_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2765049_2766138_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2767340_2768129_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2768168_2769773_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2769853_2770594_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2770601_2771096_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2771468_2772488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2772484_2773867_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2773899_2774760_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2775763_2776645_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2776703_2777141_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2777231_2778203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2778241_2779186_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2779281_2780091_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2780167_2780542_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2780648_2781341_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2781333_2781750_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781860_2782493_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782521_2782965_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782986_2784078_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2784132_2784933_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2785068_2785689_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2785828_2786302_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787441_2788392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788388_2796050_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796290_2800337_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800649_2801231_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2801227_2802526_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802605_2803634_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803894_2804845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804841_2805792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806108_2806714_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2806767_2808081_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808155_2808626_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808625_2809414_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809424_2811077_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811164_2812115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2836040	2883749	4104580	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2836040_2836991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837125_2838232_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838242_2839340_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839484_2840690_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840696_2841218_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841214_2841706_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841702_2841954_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841934_2842420_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842555_2846017_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846034_2846919_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846928_2847360_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847606_2848110_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848187_2849588_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849662_2850538_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850534_2851542_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852009_2852315_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852405_2852996_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853186_2854203_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2854394_2856731_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2856813_2857248_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2857346_2858297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858395_2859346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859342_2860137_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860168_2860873_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860947_2861748_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861744_2862152_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862148_2862790_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862782_2864783_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866043_2867375_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867371_2868322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870028_2870295_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871002_2871341_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875894_2876497_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876593_2877883_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877940_2878672_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878668_2879472_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879468_2880557_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880553_2881483_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881631_2882777_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882798_2883749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2891746	2955494	4104580	protease,transposase	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2891746_2894062_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894117_2896286_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2896282_2901472_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901561_2901876_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902103_2902349_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902443_2902962_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903061_2904267_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904382_2905780_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905896_2906475_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906547_2907939_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908106_2909057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909337_2909958_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909954_2910368_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910364_2911408_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911463_2911652_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911661_2912426_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912516_2913173_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913264_2914023_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914048_2915650_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915850_2916855_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916955_2917219_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917336_2918113_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918703_2919654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922037_2923150_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923206_2924157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2924174_2924441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2924365_2924587_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2924800_2926207_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2926203_2927508_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2927504_2928692_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2928908_2929361_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2929363_2929828_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2929907_2931587_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2931691_2932669_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2932748_2933717_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2933737_2935111_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2935107_2935944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2936060_2936516_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2936531_2936804_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2936896_2937220_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2937267_2937648_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2937867_2938665_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2938821_2940684_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2940733_2941645_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2941649_2941916_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2942002_2942872_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2943007_2943973_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2944143_2945154_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2945301_2946453_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2947595_2949068_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2949078_2949489_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2949552_2950599_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2950705_2951584_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2951597_2952794_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2952870_2954547_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2954543_2955494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	2964253	3008774	4104580	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2964253_2965204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2965278_2966433_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966489_2967440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967538_2967844_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967872_2968307_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968308_2969553_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969549_2970260_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970274_2971186_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971548_2971953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971949_2972408_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2972414_2973323_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2973319_2974186_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974172_2975000_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975010_2976138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977215_2978454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978495_2979758_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979764_2980517_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980568_2980754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981029_2981494_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981525_2982185_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982329_2984438_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984434_2985385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985488_2986109_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2986200_2986953_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988087_2989212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989257_2989626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989867_2990818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991853_2992396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992593_2992764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992781_2993732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2993728_2994694_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994763_2995600_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2996112_2997222_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2997283_2998234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2998426_2999209_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2999222_2999972_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|2999999_3001346_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3001371_3002301_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3002416_3003322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3003339_3004539_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3004611_3005304_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3005352_3007779_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3007823_3008774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	3378179	3431920	4104580	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3378179_3379130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379534_3380179_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3380203_3380788_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380888_3381506_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381508_3383224_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3383220_3383529_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383545_3384163_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3384207_3384510_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384610_3385465_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385652_3385877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3386046_3386319_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386736_3387144_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387513_3388308_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388408_3389644_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389712_3390729_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390740_3392117_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3392113_3393310_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393306_3394845_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394841_3396101_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3398041_3398992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399758_3400853_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400845_3402180_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402133_3402817_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402842_3404006_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3404002_3405004_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405003_3405876_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405872_3406622_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406618_3407410_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407406_3408546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408821_3409607_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409640_3410423_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410426_3410816_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3411955_3412819_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3412854_3413943_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413939_3414890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3415243_3418222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419148_3420027_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421975_3422926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422922_3423390_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423432_3424203_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3424223_3425024_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3425034_3426444_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426538_3427324_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427563_3428580_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428687_3429080_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3429217_3429898_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429902_3430874_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430969_3431920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	3438075	3497375	4104580	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3438075_3439839_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439950_3440829_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440941_3441757_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441760_3442012_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3442096_3443113_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443443_3443665_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3446025_3446943_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447440_3448649_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448728_3450300_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450417_3451353_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451541_3452486_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3453053_3458771_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458776_3459904_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459959_3460586_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3460857_3461874_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461969_3462680_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462676_3463666_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463761_3465393_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465395_3466133_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466288_3467161_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3467429_3468650_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468646_3469306_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469377_3470010_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3470039_3470558_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470568_3471678_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471724_3472579_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472580_3473483_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474705_3475656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477412_3478402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3478398_3478557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3478577_3479366_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479362_3480394_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480412_3480976_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3481031_3482552_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482815_3483520_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3483527_3484265_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484370_3484745_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484787_3486077_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3486073_3487243_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3487239_3488079_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3488138_3489074_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3489086_3490037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3490135_3491098_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3491129_3491489_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491613_3492516_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492517_3494290_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494324_3495101_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496424_3497375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	3512313	3571435	4104580	transposase,tRNA	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3512313_3513264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513392_3514526_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514569_3515475_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515477_3517178_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3517174_3518095_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3518102_3519080_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3519138_3520173_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3522147_3522384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3522510_3523374_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523462_3524284_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524363_3525101_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3525097_3526090_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3526203_3526866_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526910_3528059_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3530382_3531333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531673_3532624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532722_3533673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533969_3534467_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534509_3536285_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536292_3537159_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3537165_3537900_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3539069_3539864_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3540153_3540744_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540777_3542106_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3542180_3543326_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543437_3544436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544398_3544833_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546349_3547234_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3547230_3548436_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548432_3549293_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3549405_3551196_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3551236_3551902_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3551902_3552211_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552376_3553663_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_005012067.1|3555096_3556047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3556145_3557096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559047_3560262_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3560367_3561357_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3561353_3561962_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3561974_3562604_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3562600_3563221_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3563252_3564044_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3564895_3565351_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3565369_3566296_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3566349_3567636_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3568566_3569439_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3569435_3570386_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3570484_3571435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011199	Bordetella pertussis strain I238 chromosome, complete genome	4104580	4026751	4080183	4104580	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4026751_4027702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027871_4029098_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029297_4030164_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030156_4031119_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031219_4032170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032268_4033219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033317_4034268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034264_4035758_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035754_4038862_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038858_4041927_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041923_4043174_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043354_4044116_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044148_4044799_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044801_4045641_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045881_4046625_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046707_4047055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047152_4047995_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048039_4048927_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048953_4049142_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049239_4050697_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050683_4052210_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052228_4052696_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052695_4053718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053838_4054558_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054633_4055734_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055735_4056926_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057045_4058062_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058380_4059052_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059048_4059957_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060168_4060816_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064667_4065744_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065754_4066564_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066653_4067427_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067427_4067592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067609_4068560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068448_4069471_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069460_4070615_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070654_4072067_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072191_4073058_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073059_4073884_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073880_4074642_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074722_4075409_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075582_4076590_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076586_4077366_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077423_4078686_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079232_4080183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
