The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	27282	70036	4108494	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	77634	136108	4108494	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	164893	219510	4108494	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190579_191053_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	225502	287973	4108494	protease,tRNA,transposase	Bacillus_phage(25.0%)	55	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279157_279304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	391906	449415	4108494	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	590420	651610	4108494	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620619_620784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	656934	703125	4108494	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	709291	763221	4108494	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	854099	903363	4108494	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_077071157.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	912975	977915	4108494	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957571_957754_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958526_959708_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959923_960601_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960597_961323_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961448_962030_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962400_965082_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965081_966215_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966207_967293_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967379_968279_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968275_969604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969618_970290_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970477_972193_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972194_972554_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972745_973060_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973102_974323_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974319_975261_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975257_976247_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976281_976866_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	997315	1060466	4108494	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011048_1013163_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036936_1038070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1066450	1126513	4108494	protease,tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070164_1071100_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071149_1073030_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073096_1073441_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081512_1082463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096959_1097097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117897_1118038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117992_1118451_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118487_1119801_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119818_1120190_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120186_1121650_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121790_1122519_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122500_1125350_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125562_1126513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1157579	1219750	4108494	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157579_1158530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158628_1159252_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159425_1161708_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161862_1164559_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164684_1165173_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170499_1171714_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173468_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174572_1175331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176317_1177268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178435_1179158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182072_1184448_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186749_1187550_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191169_1191907_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192757_1193294_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193296_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193656_1194502_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194540_1195920_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196977_1197928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198442_1199297_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201527_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202530_1203310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205319_1207017_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208511_1209258_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215186_1215540_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215623_1216613_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216609_1216798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216815_1217766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218799_1219750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1270678	1327889	4108494	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270678_1271629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275375_1275987_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276209_1277670_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277766_1279359_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279712_1279970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279971_1281312_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281407_1282097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282109_1283540_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285264_1286086_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286096_1287668_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287696_1288674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288700_1289504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289500_1290295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290302_1291538_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291530_1291965_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292714_1293665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294286_1296014_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296125_1297484_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297540_1297759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297776_1298727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298767_1299838_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299860_1300739_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300910_1301882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302044_1302887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303048_1303729_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303722_1304892_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304888_1305920_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305963_1307205_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307239_1308772_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308852_1309476_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309506_1310118_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310153_1310624_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311055_1312060_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312096_1313611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313614_1314574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314602_1315406_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315407_1317042_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317125_1318187_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318385_1318655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318658_1319183_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319598_1320549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320545_1321580_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321688_1322327_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322621_1322849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322971_1323685_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323929_1324880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324983_1325265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325379_1326828_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326938_1327889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1418122	1470275	4108494	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418122_1419073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419090_1419243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419239_1419593_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419605_1419968_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420009_1420435_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420637_1421894_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422092_1423073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423222_1424464_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424562_1425513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425521_1426217_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429038_1429638_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429648_1431814_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431837_1433622_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433621_1433711_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434405_1434678_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434677_1436744_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436740_1437691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437789_1438740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438855_1439188_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439184_1439871_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439857_1440817_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440858_1443219_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443218_1443851_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443952_1445293_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445339_1446695_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446820_1447465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447409_1447727_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447999_1448515_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448608_1448770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448785_1449541_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449879_1450086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450093_1450753_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451047_1453252_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453362_1454586_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454708_1455683_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455750_1456944_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456958_1457759_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457755_1459612_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459608_1460214_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460232_1461618_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462343_1463570_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463658_1464441_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464539_1465490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465516_1466290_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466301_1467543_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469324_1470275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1514200	1582286	4108494	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514200_1514689_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514806_1515385_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515490_1515859_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515957_1516908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516914_1518027_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518713_1519916_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519951_1520098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520119_1522780_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522792_1526197_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526864_1529090_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529136_1529463_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529513_1530122_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530220_1531171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531240_1532005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532001_1532601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532704_1533556_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533615_1534242_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534238_1535189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535287_1536400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536389_1537391_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537496_1539008_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539004_1540309_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540420_1540981_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541248_1541803_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542258_1542474_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542728_1545326_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545322_1546510_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547168_1547783_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547871_1548999_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549010_1549916_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550808_1551759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551940_1552693_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552761_1553421_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553417_1554146_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554158_1556438_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556462_1556666_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556707_1557340_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557475_1558393_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558389_1559103_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559340_1560111_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560115_1560715_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560959_1562450_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562508_1562793_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562930_1563086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563358_1564285_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564421_1565162_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565328_1566705_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566886_1567792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569443_1571246_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571372_1572014_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572112_1573063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573084_1574305_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574490_1575903_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575966_1577034_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577033_1578521_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578530_1579475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579634_1580333_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580410_1581316_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581335_1582286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1618235	1673826	4108494	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618235_1619186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619244_1620018_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620010_1621567_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621563_1622514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623840_1624443_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624682_1625384_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625377_1626160_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626344_1627295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627393_1628131_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628320_1629079_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629125_1630115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630292_1631261_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632800_1633769_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633777_1634719_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635192_1636203_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636193_1637708_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637704_1639051_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639053_1640088_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640137_1641763_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642315_1643266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643370_1644318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644371_1646186_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646178_1646853_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646982_1650057_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650070_1650370_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650684_1651308_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651551_1652421_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652398_1653343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653428_1654355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654467_1655247_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655237_1656434_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656464_1657415_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657636_1658326_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658390_1659146_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659197_1660190_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660199_1661153_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661268_1662231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663632_1664061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664057_1665008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665301_1666039_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666462_1667650_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667653_1668034_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669753_1670725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670738_1671452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671456_1672374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672480_1672777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672875_1673826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1831593	1890863	4108494	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831593_1832544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832668_1833478_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833678_1834629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835902_1837120_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838176_1839079_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839155_1840028_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840158_1840527_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840584_1841631_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841826_1843083_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843087_1844425_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844574_1845531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845633_1846566_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846681_1847002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846994_1847354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847401_1848976_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849028_1849973_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849990_1850821_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850813_1852448_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852444_1853800_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854706_1856284_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856287_1857562_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857659_1858034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859749_1860883_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860920_1861526_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861522_1862341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862412_1865037_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865023_1865278_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865344_1865926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866229_1866490_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866655_1867279_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867278_1868052_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868048_1869257_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869282_1869756_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869829_1870780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870878_1871829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871927_1873277_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874042_1874798_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874890_1877773_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878095_1878521_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878548_1879697_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879693_1880200_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880206_1881502_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881560_1882847_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882848_1883487_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883489_1884650_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884676_1886032_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886035_1887106_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887244_1887481_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887568_1888675_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888640_1889945_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889963_1890863_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1901103	1945426	4108494	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901103_1902054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902152_1903103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903302_1904388_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904403_1905165_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905161_1906121_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906183_1906684_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906716_1907460_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907555_1907795_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907808_1907961_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908046_1909537_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909628_1910567_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910563_1910740_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910742_1911405_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913026_1913170_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913166_1914141_-	membrane protein	NA	NA	NA	NA	NA
WP_162300163.1|1914035_1914290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914307_1915258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915254_1916529_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916632_1917826_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917822_1918476_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918472_1919909_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919896_1920256_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921070_1921211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921228_1922179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923224_1925090_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925347_1926868_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926955_1927606_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928554_1929850_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929871_1930756_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930854_1931730_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931719_1932076_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932206_1933181_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933310_1933490_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933587_1934112_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934122_1934959_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935071_1935443_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935439_1935991_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936006_1937698_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937746_1938427_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938674_1939139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939308_1940238_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940250_1940898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940971_1942789_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942872_1943823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944475_1945426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	1975205	2039574	4108494	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975205_1976156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976377_1977328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977426_1978392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978529_1979429_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982023_1983511_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983521_1984718_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984790_1986110_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986106_1986982_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987012_1988161_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988178_1988493_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988514_1989237_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989236_1990055_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990059_1990587_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990592_1991849_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992207_1993347_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993424_1994297_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995167_1996118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996077_1996713_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997072_1998395_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998713_1999535_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000959_2001532_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001571_2003401_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003363_2004422_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004459_2004921_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005005_2005752_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007242_2010473_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010539_2011871_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012123_2012498_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012600_2013779_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013789_2014380_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014490_2015297_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015322_2016117_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017117_2018092_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018250_2018763_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018919_2019891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021635_2022442_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022438_2023740_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023690_2024455_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024568_2025339_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025423_2026611_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026683_2027058_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027158_2028421_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028417_2029275_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029447_2030449_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030900_2031851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033366_2034566_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034934_2035171_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035234_2035402_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035515_2037321_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037574_2038525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038623_2039574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2171112	2220765	4108494	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171112_2172063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172161_2174156_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174215_2175181_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175170_2178032_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178034_2178541_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178645_2179854_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179855_2180794_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180955_2181429_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181425_2182376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182486_2182927_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183055_2184285_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184323_2185145_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185198_2186350_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186441_2186930_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189480_2192030_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192100_2194674_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194939_2195140_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195171_2195333_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195390_2195729_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195877_2196828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197602_2198271_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198252_2200268_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200450_2201200_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201212_2202076_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202079_2203495_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203628_2204357_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204495_2204696_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204871_2205270_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205293_2206694_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206812_2207565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207853_2208453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208557_2209337_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209333_2210218_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210235_2211015_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210999_2211758_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211883_2212531_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212798_2213815_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213912_2214953_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215087_2216380_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217739_2218123_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218140_2218728_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218765_2219716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219814_2220765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2228489	2288500	4108494	protease,transposase	uncultured_Caudovirales_phage(33.33%)	60	NA	NA
WP_005012067.1|2228489_2229440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2229538_2230489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809939.1|2230485_2230758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930805.1|2231016_2233728_-	autotransporter BapA	NA	NA	NA	NA	NA
WP_010930806.1|2234382_2235840_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003820087.1|2235836_2236187_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003809933.1|2236330_2236759_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010930807.1|2236842_2238006_+	alanine racemase	NA	NA	NA	NA	NA
WP_023995091.1|2238002_2240444_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930809.1|2240528_2242550_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_014905553.1|2242546_2243734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|2245060_2245261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930812.1|2245297_2245996_+	type III secretion system regulator BspR	NA	NA	NA	NA	NA
WP_003809919.1|2246170_2246773_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930813.1|2246793_2248596_-	SctC family type III secretion system outer membrane ring subunit BscC	NA	NA	NA	NA	NA
WP_010930814.1|2248586_2248985_-	type III secretion system protein BscW	NA	NA	NA	NA	NA
WP_010930815.1|2248981_2250031_-	SctU family type III secretion system export apparatus subunit BscU	NA	NA	NA	NA	NA
WP_010930816.1|2250027_2250828_-	SctT family type III secretion system export apparatus subunit BscT	NA	NA	NA	NA	NA
WP_010930817.1|2250839_2251106_-	SctS family type III secretion system export apparatus subunit BscS	NA	NA	NA	NA	NA
WP_004568087.1|2251111_2251783_-	SctR family type III secretion system export apparatus subunit BscR	NA	NA	NA	NA	NA
WP_010930818.1|2251779_2252859_-	SctQ family type III secretion system cytoplasmic ring protein BscQ	NA	NA	NA	NA	NA
WP_010930819.1|2252855_2253404_-	type III secretion system protein BscP	NA	NA	NA	NA	NA
WP_003820063.1|2253400_2253910_-	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_003820061.1|2253909_2255244_-	SctN family type III secretion system ATPase BscN	NA	NA	NA	NA	NA
WP_010930820.1|2255248_2255887_-	SctL family type III secretion system stator protein BscL	NA	NA	NA	NA	NA
WP_003820059.1|2255856_2256519_-	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930821.1|2256511_2257336_-	SctJ family type III secretion inner membrane ring lipoprotein Bsc	NA	NA	NA	NA	NA
WP_019248576.1|2257332_2257740_-	SctI family type III secretion system inner rod subunit BscI	NA	NA	NA	NA	NA
WP_010930823.1|2257736_2258258_-	type III secretion system protein Bcr4	NA	NA	NA	NA	NA
WP_003809889.1|2258262_2258724_-	SycD/LcrH family type III secretion system chaperone BcrH2	NA	NA	NA	NA	NA
WP_010930824.1|2258747_2259956_-	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_010930825.1|2259979_2260921_-	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_004568102.1|2260968_2261454_-	SycD/LcrH family type III secretion system chaperone BcrH1	NA	NA	NA	NA	NA
WP_010930826.1|2261469_2261745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820049.1|2261766_2262384_-	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930827.1|2262547_2263645_+	SctW family type III secretion system gatekeeper subunit BopN	NA	NA	NA	NA	NA
WP_010930828.1|2263641_2264019_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930829.1|2264023_2264434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930830.1|2264430_2264799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930831.1|2264795_2266895_+	SctV family type III secretion system export apparatus subunit BcrD	NA	NA	NA	NA	NA
WP_010930832.1|2266891_2268172_+	SctD family type III secretion system inner membrane ring subunit BscD	NA	NA	NA	NA	NA
WP_003820040.1|2268212_2268512_+	type III secretion system protein BscE	NA	NA	NA	NA	NA
WP_003809869.1|2268501_2268768_+	type III secretion system protein BscF	NA	NA	NA	NA	NA
WP_010930833.1|2268803_2269259_-	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_005012067.1|2269600_2270551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2270649_2271600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2271901_2272378_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2273001_2274639_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2274669_2275983_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2276116_2276434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2276534_2277857_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2277853_2278804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2279333_2280356_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2280384_2281215_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2281231_2282929_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2282993_2284070_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2284229_2285093_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2285123_2285693_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2285709_2286561_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2287618_2288500_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 23
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2478119	2536363	4108494	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2478119_2479070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479549_2480206_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480220_2481888_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481890_2482520_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482731_2483826_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483970_2484783_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2484786_2486490_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2486540_2487671_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487857_2488934_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489015_2489666_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489680_2491084_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491367_2492186_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2492182_2492887_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493786_2494902_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494935_2495310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495332_2496490_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496502_2496736_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497370_2500340_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500354_2500564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500715_2501345_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2501341_2503432_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503455_2504136_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504132_2504693_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504699_2505797_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505949_2506543_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506539_2507832_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507845_2508388_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508397_2509234_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509267_2510329_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510370_2511423_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511438_2511741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511882_2512833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2512850_2513015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513011_2514706_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514702_2515788_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515835_2516735_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516745_2517390_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518411_2521654_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521664_2522819_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523045_2524008_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524106_2525057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525155_2526106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526115_2526805_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526864_2527302_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527347_2528241_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528288_2529461_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529457_2530612_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2530808_2531159_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531148_2531583_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531599_2532550_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532697_2533165_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533145_2534303_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534368_2535295_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535412_2536363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2578641	2645141	4108494	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578641_2579592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579961_2580534_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580536_2581547_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581539_2582040_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582050_2582392_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2582403_2583195_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583211_2583481_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583503_2584292_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584338_2585355_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585571_2587014_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587192_2588812_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077071158.1|2588932_2590753_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
WP_010930330.1|2590831_2592364_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2592397_2594044_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594113_2595136_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595153_2596287_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596289_2596979_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596978_2597764_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597807_2598572_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598610_2600032_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600097_2600802_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600849_2601269_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601281_2601689_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601872_2602583_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602709_2603000_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603017_2603500_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608005_2609160_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609465_2610482_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610728_2611517_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611583_2612264_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612260_2613031_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010929588.1|2613129_2614080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614135_2615053_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615063_2616242_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616261_2617257_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618845_2619454_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619441_2620482_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620499_2621462_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621458_2622652_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622648_2623446_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623471_2624458_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624476_2626516_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2626717_2627398_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627411_2628323_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628319_2628898_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629036_2629942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629949_2633369_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633356_2635957_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636912_2637545_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637938_2638697_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2638693_2639896_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640083_2641034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641941_2643087_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643073_2643829_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643945_2644125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644190_2645141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2673256	2710668	4108494	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673256_2674207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674305_2675256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675348_2675888_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675994_2676339_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676396_2677845_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678032_2678368_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679995_2681174_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681256_2681757_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2681866_2682568_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2682579_2683044_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683058_2683334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683330_2684107_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684135_2684963_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685088_2685559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685685_2686579_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686626_2687808_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687820_2688636_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2688769_2689297_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689293_2689791_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689938_2690316_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690537_2691488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691586_2692198_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692432_2693560_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693670_2694759_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694811_2695663_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695682_2696564_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696740_2698054_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698264_2699098_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699094_2699676_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700029_2700980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700995_2702111_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702213_2703140_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703139_2704378_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704374_2705142_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705142_2705844_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705925_2706372_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2707261_2707900_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708668_2709619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709717_2710668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2809795	2930172	4108494	protease,transposase	Agrobacterium_phage(16.67%)	97	NA	NA
WP_023853639.1|2809795_2810746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2810844_2811795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812123_2812729_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2812782_2814096_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814170_2814641_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814640_2815429_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815439_2817092_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817179_2818130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819291_2819798_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819794_2820559_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820574_2820859_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820923_2821913_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822084_2823014_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822985_2823672_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823705_2824251_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824295_2825561_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825557_2826460_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827641_2828586_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828680_2830198_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830239_2831868_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831975_2832857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835969_2836344_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836368_2836707_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836750_2838385_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838423_2839770_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2839877_2841299_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841368_2841953_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842055_2843006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843140_2844247_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844257_2845355_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845499_2846705_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846711_2847233_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2847229_2847721_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847717_2847969_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847949_2848435_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848570_2852032_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852049_2852934_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852943_2853375_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853621_2854125_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854202_2855603_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855677_2856553_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856549_2857557_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858024_2858330_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858420_2859011_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859201_2860218_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860409_2862746_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862828_2863263_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863361_2864312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864410_2865361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865357_2866152_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866183_2866888_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866962_2867763_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867759_2868167_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868163_2868805_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868797_2870798_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872058_2873390_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873386_2874337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876043_2876310_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877017_2877356_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881909_2882512_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882608_2883898_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883955_2884687_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884683_2885487_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885483_2886572_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886568_2887498_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887646_2888792_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888813_2889764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2889781_2889940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890094_2893916_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894072_2894741_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894745_2896419_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896437_2897757_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897761_2900077_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900132_2902301_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2902297_2907487_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907576_2907891_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908118_2908364_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908458_2908977_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909076_2910282_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910397_2911795_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911911_2912490_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912562_2913954_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914121_2915072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915352_2915973_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915969_2916383_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916379_2917423_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917478_2917667_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917676_2918441_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918531_2919188_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919279_2920038_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920063_2921665_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921865_2922870_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922970_2923234_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923351_2924128_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924718_2925669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928052_2929165_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929221_2930172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	2960558	3004249	4108494	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2960558_2961509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961526_2961676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961629_2962526_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964803_2967029_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967193_2968282_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968238_2968892_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968939_2969737_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970268_2971219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2971293_2972448_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972504_2973455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973553_2973859_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973887_2974322_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974323_2975568_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975564_2976275_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976289_2977201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977563_2977968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977964_2978423_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2978429_2979338_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2979334_2980201_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980187_2981015_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981025_2982153_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983230_2984469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984510_2985773_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985779_2986532_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986583_2986769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987044_2987509_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987540_2988200_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988344_2990453_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990449_2991400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991503_2992124_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2992215_2992968_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994102_2995227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995272_2995641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995882_2996833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997868_2998411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998608_2998779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998796_2999747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2999743_3000709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000778_3001615_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002127_3003237_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003298_3004249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	3384194	3437935	4108494	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384194_3385145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385549_3386194_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386218_3386803_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386903_3387521_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387523_3389239_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389235_3389544_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389560_3390178_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390222_3390525_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390625_3391480_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391667_3391892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392061_3392334_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392751_3393159_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393528_3394323_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394423_3395659_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395727_3396744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396755_3398132_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398128_3399325_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399321_3400860_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400856_3402116_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404056_3405007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405773_3406868_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406860_3408195_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408148_3408832_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3408857_3410021_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3410017_3411019_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411018_3411891_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411887_3412637_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412633_3413425_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413421_3414561_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414836_3415622_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415655_3416438_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416441_3416831_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3417970_3418834_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3418869_3419958_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419954_3420905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421258_3424237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425163_3426042_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427990_3428941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428937_3429405_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429447_3430218_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430238_3431039_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431049_3432459_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432553_3433339_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433578_3434595_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434702_3435095_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435232_3435913_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435917_3436889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436984_3437935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	3444090	3503388	4108494	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3444090_3445854_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445965_3446844_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446956_3447772_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447775_3448027_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448111_3449128_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449458_3449680_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452040_3452958_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453455_3454664_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454743_3456315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456432_3457368_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457556_3458501_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459068_3464786_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464791_3465919_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465974_3466601_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3466872_3467889_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467984_3468695_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468691_3469681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469776_3471408_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471410_3472148_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472303_3473176_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473444_3474665_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474661_3475321_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475392_3476025_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476054_3476573_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476583_3477693_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477739_3478594_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478595_3479498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480720_3481671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483425_3484415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484411_3484570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484590_3485379_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485375_3486407_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486425_3486989_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487044_3488565_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488828_3489533_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489540_3490278_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490383_3490758_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490800_3492090_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492086_3493256_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493252_3494092_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494151_3495087_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495099_3496050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496148_3497111_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497142_3497502_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497626_3498529_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498530_3500303_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500337_3501114_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502437_3503388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011201	Bordetella pertussis strain I387 chromosome, complete genome	4108494	3518326	3576399	4108494	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518326_3519277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519405_3520539_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520582_3521488_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521490_3523191_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523187_3524108_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524115_3525093_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525151_3526186_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528160_3528397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528523_3529387_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529475_3530297_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530376_3531114_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531110_3532103_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532216_3532879_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532923_3534072_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536395_3537346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537686_3538637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538735_3539686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539982_3540480_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540522_3542298_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542305_3543172_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543178_3543913_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545082_3545877_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546166_3546757_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546790_3548119_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548193_3549339_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549450_3550449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550411_3550846_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552362_3553247_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553243_3554449_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554445_3555306_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3555418_3557209_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557249_3557915_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3557915_3558224_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558389_3559676_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3561109_3562060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564011_3565226_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565331_3566321_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566317_3566926_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566938_3567568_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567564_3568185_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568216_3569008_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569859_3570315_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3570333_3571260_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571313_3572600_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573530_3574403_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574399_3575350_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575448_3576399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
