The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	27282	70036	4105340	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	77634	136108	4105340	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	164893	225404	4105340	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	233336	286924	4105340	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	390857	448366	4105340	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	591469	652660	4105340	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621669_621834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	657984	704175	4105340	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	710341	764271	4105340	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	855149	914975	4105340	transposase,holin	Vibrio_phage(25.0%)	48	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_003814000.1|904408_905128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905248_907408_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907498_907768_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|908061_908589_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908607_909387_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909554_910571_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910643_911135_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911145_912861_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914024_914975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	935722	999315	4105340	transposase	Bacillus_virus(15.38%)	57	NA	NA
WP_005012067.1|935722_936673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936725_936947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937106_937319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937438_938557_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939062_939314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940811_942626_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954831_955806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955930_956842_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957118_957511_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957640_958591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958620_958803_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959575_960757_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960972_961650_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961646_962372_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962497_963079_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963449_966131_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966130_967264_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967256_968342_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968428_969328_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969324_970653_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970667_971339_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971526_973242_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973243_973603_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973794_974109_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974151_975372_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975368_976310_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976306_977296_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977330_977915_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978013_978964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979044_979956_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980016_981162_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981181_982096_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982167_982917_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982916_983846_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984089_985916_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985998_986640_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986862_987864_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989700_990765_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991562_992471_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993958_995233_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995386_995767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995774_996647_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996952_997333_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997543_998269_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998364_999315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1037984	1086922	4105340	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_023853531.1|1037984_1039118_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039210_1039363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039394_1039943_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039961_1040447_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040624_1041563_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041565_1041883_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041928_1042873_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044553_1045204_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045257_1045593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045589_1046450_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046466_1046748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046821_1047085_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047328_1048279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048577_1049315_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049750_1050074_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050108_1050669_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050789_1051665_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051677_1052625_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052726_1053020_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053046_1055104_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055118_1055619_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055692_1057399_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058262_1059315_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059367_1059757_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059765_1060398_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060497_1061514_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062302_1063352_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063348_1064992_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064988_1065876_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066016_1066490_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066479_1067502_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067498_1068926_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069863_1070880_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071212_1072148_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072197_1074078_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074144_1074489_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074633_1075770_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075766_1076840_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076997_1078434_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078524_1079166_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079501_1080518_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080850_1083598_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083664_1085086_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085349_1086066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086150_1086468_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 12
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1095990	1159578	4105340	protease,transposase,tRNA	Planktothrix_phage(18.18%)	51	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096958_1097096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110494_1110746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113726_1114434_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117896_1118037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117991_1118450_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118486_1119800_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119817_1120189_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120185_1121649_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121789_1122518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122499_1125349_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125561_1126512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135666_1136422_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136451_1137556_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137658_1139359_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139340_1140318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140327_1141608_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141600_1142296_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142329_1143157_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143438_1146669_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147404_1151331_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1154163_1155027_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_005012067.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1158627_1159578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1317949	1386436	4105340	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317949_1318900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319668_1320307_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321196_1321643_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321724_1322426_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322426_1323194_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323190_1324429_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324428_1325355_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325457_1326573_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326588_1327539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327892_1328474_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328470_1329304_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329514_1330828_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331004_1331886_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331905_1332757_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332809_1333898_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334008_1335136_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335370_1335982_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336080_1337031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337252_1337630_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337777_1338275_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338271_1338799_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338932_1339748_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339760_1340942_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340989_1341883_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342009_1342480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342605_1343433_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343461_1344238_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344234_1344510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344524_1344989_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345000_1345702_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345811_1346312_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346394_1347573_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349200_1349536_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349723_1351172_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351229_1351574_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351680_1352220_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352312_1353263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353280_1353520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354001_1354433_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354614_1355019_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356255_1356579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356581_1357469_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357501_1357927_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357998_1358352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358591_1359098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359136_1360468_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360527_1361343_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361339_1362194_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365256_1367800_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369166_1370921_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370917_1373038_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373042_1375238_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375234_1378576_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381378_1382329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382394_1382574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382690_1383446_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383432_1384578_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385485_1386436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1446927	1502415	4105340	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446927_1447878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449079_1449526_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449518_1450994_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450990_1451746_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451738_1452749_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452738_1454415_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454727_1455060_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455073_1455469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455478_1455805_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455801_1456128_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456054_1457077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457073_1457424_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457471_1457900_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457907_1459281_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459421_1459799_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460061_1461369_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461429_1462260_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462256_1462745_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462786_1464307_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464350_1464827_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465630_1468228_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468257_1469079_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469805_1470555_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470738_1471617_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471714_1472431_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472445_1473006_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473172_1473937_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473956_1474814_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474810_1476010_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476049_1477384_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477436_1479773_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479898_1480462_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480470_1481562_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481633_1482089_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482089_1482884_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482880_1484062_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484048_1484654_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484650_1485424_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485435_1486263_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486424_1488788_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488855_1489575_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489698_1490124_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490158_1491109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491226_1492153_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492218_1493376_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493356_1493824_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493971_1494922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494938_1495373_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495362_1495713_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495909_1497064_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497060_1498233_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498280_1499174_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499219_1499657_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499716_1500406_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500415_1501366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501464_1502415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1597112	1665197	4105340	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1597112_1597601_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597718_1598297_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598402_1598771_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598869_1599820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599826_1600939_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601625_1602828_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1602863_1603010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1603031_1605692_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1605704_1609109_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609776_1612002_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612048_1612375_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612425_1613034_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613132_1614083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614152_1614917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1614913_1615513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615616_1616468_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616527_1617154_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617150_1618101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618199_1619312_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619301_1620303_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620408_1621920_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621916_1623221_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623332_1623893_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624160_1624715_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625170_1625386_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625640_1628238_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628234_1629422_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1630079_1630694_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1630782_1631910_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631921_1632827_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633719_1634670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634851_1635604_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635672_1636332_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636328_1637057_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637069_1639349_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639373_1639577_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639618_1640251_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640386_1641304_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641300_1642014_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642251_1643022_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643026_1643626_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643870_1645361_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645419_1645704_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1645841_1645997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1646269_1647196_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647332_1648073_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648239_1649616_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649797_1650703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652354_1654157_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1654283_1654925_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655023_1655974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1655995_1657216_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657401_1658814_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658877_1659945_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659944_1661432_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661441_1662386_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662545_1663244_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663321_1664227_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664246_1665197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	1701146	1756737	4105340	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701146_1702097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702155_1702929_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702921_1704478_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704474_1705425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706751_1707354_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707593_1708295_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708288_1709071_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709255_1710206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710304_1711042_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711231_1711990_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712036_1713026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713203_1714172_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715711_1716680_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716688_1717630_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718103_1719114_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719104_1720619_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720615_1721962_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1721964_1722999_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723048_1724674_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725226_1726177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726281_1727229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727282_1729097_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729089_1729764_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729893_1732968_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732981_1733281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733595_1734219_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734462_1735332_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735309_1736254_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736339_1737266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737378_1738158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738148_1739345_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739375_1740326_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740547_1741237_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741301_1742057_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742108_1743101_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743110_1744064_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744179_1745142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746543_1746972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746968_1747919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748212_1748950_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749373_1750561_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750564_1750945_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752664_1753636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753649_1754363_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754367_1755285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755391_1755688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755786_1756737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2076906	2134185	4105340	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|2076906_2077857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2077955_2080556_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2080662_2081667_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2081775_2083116_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2083156_2084185_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2084380_2084926_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2084922_2085483_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2085581_2086532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2086569_2087157_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2087174_2087558_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2088917_2090210_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2090344_2091385_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2091482_2092499_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2092766_2093414_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2093539_2094298_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2094282_2095062_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2095079_2095964_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2095960_2096740_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2096844_2097444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2097732_2098485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2098603_2100004_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2100027_2100426_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2100601_2100802_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2100940_2101669_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2101802_2103218_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2103221_2104085_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2104097_2104847_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2105029_2107045_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2107026_2107695_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2108469_2109420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2109568_2109907_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2109964_2110126_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2110157_2110358_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2110623_2113197_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2113267_2115817_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2118367_2118856_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2118947_2120099_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2120152_2120974_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2121012_2122242_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2122370_2122811_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2122921_2123872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2123868_2124342_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2124503_2125442_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2125443_2126652_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2126756_2127263_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2127265_2130127_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2130116_2131082_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2131141_2133136_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2133234_2134185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2185434	2244704	4105340	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2185434_2186385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2186509_2187319_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2187519_2188470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2189743_2190961_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2192017_2192920_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2192996_2193869_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2193999_2194368_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2194425_2195472_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2195667_2196924_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2196928_2198266_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2198415_2199372_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2199474_2200407_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2200522_2200843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2200835_2201195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2201242_2202817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2202869_2203814_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2203831_2204662_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2204654_2206289_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2206285_2207641_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2208547_2210125_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2210128_2211403_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2211500_2211875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2213590_2214724_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2214761_2215367_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2215363_2216182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2216253_2218878_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2218864_2219119_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2219185_2219767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2220070_2220331_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2220496_2221120_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2221119_2221893_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2221889_2223098_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2223123_2223597_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2223670_2224621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2224719_2225670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2225768_2227118_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2227883_2228639_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2228731_2231614_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2231936_2232362_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2232389_2233538_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2233534_2234041_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2234047_2235343_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2235401_2236688_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2236689_2237328_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2237330_2238491_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2238517_2239873_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2239876_2240947_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2241085_2241322_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2241409_2242516_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2242481_2243786_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2243804_2244704_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2254944	2299267	4105340	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|2254944_2255895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2255993_2256944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2257143_2258229_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2258244_2259006_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2259002_2259962_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2260024_2260525_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2260557_2261301_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2261396_2261636_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2261649_2261802_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2261887_2263378_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2263469_2264408_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2264404_2264581_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2264583_2265246_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2266867_2267011_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2267007_2267982_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2267876_2268131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2268148_2269099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2269095_2270370_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2270473_2271667_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2271663_2272317_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2272313_2273750_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2273737_2274097_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2274911_2275052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2275069_2276020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2277065_2278931_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2279188_2280709_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2280796_2281447_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2282395_2283691_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2283712_2284597_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2284695_2285571_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2285560_2285917_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2286047_2287022_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2287151_2287331_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2287428_2287953_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2287963_2288800_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_077069069.1|2288912_2289284_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2289280_2289832_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2289847_2291539_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2291587_2292268_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2292515_2292980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2293149_2294079_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2294091_2294739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2294812_2296630_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2296713_2297664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2298316_2299267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2329040	2393409	4105340	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2329040_2329991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2330212_2331163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2331261_2332227_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2332364_2333264_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2335858_2337346_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2337356_2338553_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2338625_2339945_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2339941_2340817_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2340847_2341996_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2342013_2342328_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2342349_2343072_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2343071_2343890_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2343894_2344422_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2344427_2345684_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2346042_2347182_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2347259_2348132_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2349002_2349953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2349912_2350548_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2350907_2352230_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2352548_2353370_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2354794_2355367_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2355406_2357236_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2357198_2358257_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2358294_2358756_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2358840_2359587_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2361077_2364308_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2364374_2365706_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2365958_2366333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2366435_2367614_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2367624_2368215_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2368325_2369132_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2369157_2369952_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2370952_2371927_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2372085_2372598_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2372754_2373726_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2375470_2376277_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2376273_2377575_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2377525_2378290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2378403_2379174_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2379258_2380446_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2380518_2380893_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2380993_2382256_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2382252_2383110_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2383282_2384284_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2384735_2385686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2387201_2388401_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2388769_2389006_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2389069_2389237_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2389350_2391156_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2391409_2392360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2392458_2393409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2685964	2726633	4105340	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2685964_2686915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2687025_2687208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2687307_2687904_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2688087_2689179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2689678_2690089_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2690147_2690489_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2690494_2692912_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2692924_2693947_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2694021_2694381_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2694396_2694594_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2694929_2695880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2696074_2696524_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2696520_2697471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2697581_2699030_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2699144_2699426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2699529_2700480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2700724_2701438_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2701560_2701788_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2702082_2702721_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2702829_2703864_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2703860_2704811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2705226_2705751_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2705754_2706024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2706222_2707284_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2707367_2709002_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2709003_2709807_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2709835_2710795_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2710798_2712313_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2712349_2713354_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2713785_2714256_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2714291_2714903_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2714933_2715557_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2715637_2717170_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2717204_2718446_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2718489_2719521_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2719517_2720687_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2720680_2721361_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2721522_2722365_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2722527_2723499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2723670_2724549_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2724571_2725642_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2725682_2726633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2730744	2812879	4105340	tRNA,transposase	Bacillus_virus(28.57%)	60	NA	NA
WP_005013747.1|2730744_2731695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2732444_2732879_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2732871_2734107_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2734114_2734909_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2734905_2735709_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2735735_2736713_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2736741_2738313_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2738323_2739145_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2740869_2742300_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2742312_2743002_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2743097_2744438_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2744439_2744697_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2745050_2746643_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2746739_2748200_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2748422_2749034_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2752780_2753731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2754146_2756783_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2756779_2757904_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2757900_2759283_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2759418_2759886_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2760007_2760676_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2760805_2761951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2761952_2763683_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2763800_2764109_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2764121_2764934_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2765814_2766903_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2768105_2768894_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2768933_2770538_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2770618_2771359_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2771366_2771861_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2772233_2773253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2773249_2774632_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2774664_2775525_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2776528_2777410_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2777468_2777906_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2777996_2778968_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2779006_2779951_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2780046_2780856_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2780932_2781307_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2781413_2782106_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2782098_2782515_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2782625_2783258_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2783286_2783730_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2783751_2784843_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2784897_2785698_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2785833_2786454_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2786593_2787067_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2788206_2789157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931067.1|2797054_2801101_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2801413_2801995_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2801991_2803290_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2803369_2804398_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2804658_2805609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2805605_2806556_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806872_2807478_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807531_2808845_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808919_2809390_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809389_2810178_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810188_2811841_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811928_2812879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2836804	2884513	4105340	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2836804_2837755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837889_2838996_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2839006_2840104_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840248_2841454_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841460_2841982_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841978_2842470_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842466_2842718_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842698_2843184_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843319_2846781_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846798_2847683_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847692_2848124_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848370_2848874_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848951_2850352_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850426_2851302_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851298_2852306_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852773_2853079_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853169_2853760_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853950_2854967_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855158_2857495_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857577_2858012_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2858110_2859061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2859159_2860110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2860106_2860901_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860932_2861637_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2861711_2862512_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2862508_2862916_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862912_2863554_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2863546_2865547_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866807_2868139_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2868135_2869086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870792_2871059_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871766_2872105_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876658_2877261_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877357_2878647_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878704_2879436_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879432_2880236_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2880232_2881321_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881317_2882247_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882395_2883541_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883562_2884513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2892510	2956258	4105340	protease,transposase	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2892510_2894826_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894881_2897050_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2897046_2902236_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902325_2902640_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902867_2903113_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903207_2903726_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903825_2905031_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905146_2906544_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906660_2907239_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907311_2908703_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908870_2909821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910101_2910722_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910718_2911132_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911128_2912172_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912227_2912416_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912425_2913190_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913280_2913937_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2914028_2914787_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914812_2916414_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916614_2917619_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917719_2917983_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918100_2918877_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919467_2920418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922801_2923914_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923970_2924921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2924938_2925205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2925129_2925351_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2925564_2926971_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2926967_2928272_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2928268_2929456_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2929672_2930125_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2930127_2930592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2930671_2932351_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2932455_2933433_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2933512_2934481_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2934501_2935875_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2935871_2936708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2936824_2937280_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2937295_2937568_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2937660_2937984_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2938031_2938412_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2938631_2939429_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2939585_2941448_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2941497_2942409_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2942413_2942680_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2942766_2943636_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2943771_2944737_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2944907_2945918_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2946065_2947217_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2948359_2949832_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2949842_2950253_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2950316_2951363_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2951469_2952348_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2952361_2953558_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2953634_2955311_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2955307_2956258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	2965017	3009538	4105340	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2965017_2965968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2966042_2967197_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2967253_2968204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2968302_2968608_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968636_2969071_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2969072_2970317_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970313_2971024_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2971038_2971950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972312_2972717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972713_2973172_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2973178_2974087_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2974083_2974950_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974936_2975764_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975774_2976902_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977979_2979218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2979259_2980522_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980528_2981281_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981332_2981518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981793_2982258_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982289_2982949_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2983093_2985202_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2985198_2986149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2986252_2986873_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2986964_2987717_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988851_2989976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2990021_2990390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990631_2991582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992617_2993160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2993357_2993528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993545_2994496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2994492_2995458_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2995527_2996364_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2996876_2997986_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2998047_2998998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2999190_2999973_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2999986_3000736_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3000763_3002110_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3002135_3003065_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3003180_3004086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3004103_3005303_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3005375_3006068_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3006116_3008543_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3008587_3009538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	3379990	3433731	4105340	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379990_3380941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381345_3381990_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382014_3382599_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382699_3383317_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383319_3385035_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385031_3385340_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385356_3385974_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386018_3386321_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386421_3387276_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387463_3387688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387857_3388130_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388547_3388955_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389324_3390119_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390219_3391455_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391523_3392540_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392551_3393928_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393924_3395121_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395117_3396656_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396652_3397912_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399852_3400803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401569_3402664_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402656_3403991_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403944_3404628_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404653_3405817_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405813_3406815_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406814_3407687_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407683_3408433_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408429_3409221_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409217_3410357_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410632_3411418_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411451_3412234_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412237_3412627_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413766_3414630_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414665_3415754_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415750_3416701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069072.1|3417054_3420033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420959_3421838_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423786_3424737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424733_3425201_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425243_3426014_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426034_3426835_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426845_3428255_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428349_3429135_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429374_3430391_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430498_3430891_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431028_3431709_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431713_3432685_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432780_3433731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	3439886	3499186	4105340	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439886_3441650_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441761_3442640_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442752_3443568_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443571_3443823_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3443907_3444924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445254_3445476_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447836_3448754_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449251_3450460_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450539_3452111_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452228_3453164_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453352_3454297_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_077069073.1|3454864_3460582_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460587_3461715_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461770_3462397_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462668_3463685_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463780_3464491_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464487_3465477_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465572_3467204_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467206_3467944_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468099_3468972_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469240_3470461_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470457_3471117_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471188_3471821_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471850_3472369_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472379_3473489_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473535_3474390_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474391_3475294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476516_3477467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479223_3480213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480209_3480368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480388_3481177_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481173_3482205_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482223_3482787_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482842_3484363_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484626_3485331_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485338_3486076_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486181_3486556_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486598_3487888_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487884_3489054_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489050_3489890_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489949_3490885_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490897_3491848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491946_3492909_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492940_3493300_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493424_3494327_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494328_3496101_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496135_3496912_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498235_3499186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012079	Bordetella pertussis strain H852 chromosome, complete genome	4105340	3514124	3572197	4105340	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514124_3515075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515203_3516337_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516380_3517286_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517288_3518989_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518985_3519906_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519913_3520891_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520949_3521984_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523958_3524195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524321_3525185_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525273_3526095_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526174_3526912_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526908_3527901_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528014_3528677_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528721_3529870_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532193_3533144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533484_3534435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534533_3535484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535780_3536278_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536320_3538096_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538103_3538970_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538976_3539711_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540880_3541675_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541964_3542555_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542588_3543917_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543991_3545137_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545248_3546247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546209_3546644_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548160_3549045_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549041_3550247_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550243_3551104_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551216_3553007_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553047_3553713_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553713_3554022_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554187_3555474_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556907_3557858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559809_3561024_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561129_3562119_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562115_3562724_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562736_3563366_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563362_3563983_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564014_3564806_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565657_3566113_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566131_3567058_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567111_3568398_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569328_3570201_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570197_3571148_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571246_3572197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
