The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	27288	70042	4108752	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27288_28239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28320_28656_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28680_29115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29147_30365_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30370_30868_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31075_32011_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32220_33012_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33054_34476_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34631_35582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35578_36769_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37018_37930_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37931_40070_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40066_40606_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40609_41338_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41324_42218_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42288_42684_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42693_43224_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43352_43652_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43669_44620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45206_45755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45726_45963_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46090_46984_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48153_49401_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49397_50012_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50147_51098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51140_52397_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53628_54363_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54368_54959_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54983_55673_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55669_56431_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56510_57410_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57503_58454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59254_60481_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60480_60900_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61083_62025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62448_63423_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63479_64061_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64073_64376_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64494_65553_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65587_66859_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67488_68670_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69091_70042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	77640	136114	4108752	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77640_78591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78665_79610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79606_81481_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82828_83533_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83529_84636_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84897_85491_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85487_86675_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86737_87997_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88020_89109_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89116_90217_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90220_90796_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90799_91852_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91982_92990_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92991_94278_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94474_95278_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95274_96141_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96215_97346_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97345_98185_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99117_99720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99749_100403_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100535_101792_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101872_102739_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102814_103090_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103097_103760_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103821_104823_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104837_105386_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105443_106340_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106336_107398_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107433_108384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109283_110477_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110558_111188_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111249_111933_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111942_113625_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113912_114260_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114350_114668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|114950_115967_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116042_116843_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116839_117715_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117725_119018_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119060_120101_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120206_121028_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121128_122079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122177_123083_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123079_123913_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124749_125760_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125756_126146_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127039_128293_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128383_130084_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130510_131158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131156_132596_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132706_132991_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133018_133897_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135163_136114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	164898	225421	4108752	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164898_165849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167292_168195_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168172_168802_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169084_170515_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170548_171178_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171226_172834_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172858_173542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173623_174100_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174306_175257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176372_176900_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176991_177807_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177867_178602_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178639_180718_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180967_181240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181341_182427_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182430_184335_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184331_188006_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188066_188630_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188637_189060_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189087_189507_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189535_189982_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190108_190606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190760_193031_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193106_194312_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194410_195361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195463_196099_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196095_196989_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197383_198484_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198565_198940_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198999_201864_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202008_202749_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202818_204030_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204058_205027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205640_206591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206747_207071_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207175_208216_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208221_209001_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209046_209343_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209368_209644_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209700_210345_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210344_211031_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211229_212012_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212062_212788_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212819_214169_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214280_215213_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215670_218466_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219071_221915_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222085_222805_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222843_223392_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223546_224446_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224470_225421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	233354	286942	4108752	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233354_234305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234391_235342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235338_236289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236387_237185_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238134_238545_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239566_240310_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240353_241397_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241567_243670_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245080_246037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246055_246547_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246543_247899_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247899_248598_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248594_249296_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249548_250598_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250703_251645_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251641_253531_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253617_254256_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254398_255784_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255714_256251_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256402_257794_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257810_258791_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258926_259910_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259974_260874_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260980_262735_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262742_263867_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263880_264861_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265591_266542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267101_267647_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267772_269350_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269365_270520_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270533_270659_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270655_272407_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272403_274083_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274145_274694_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275836_276115_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277158_278109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278095_278311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278386_278548_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279214_279664_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279673_280285_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280443_281292_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281317_282700_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282764_283406_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283545_284004_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284028_284805_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284858_285995_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285991_286942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	390875	448384	4108752	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390875_391826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391962_392880_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392876_393125_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393121_394327_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394399_395395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395417_396638_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396634_397279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|399009_399819_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400123_401077_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401175_402159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402085_402787_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402835_403606_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403602_404781_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404948_406655_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406651_407548_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407588_409178_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409227_410220_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410288_410888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411348_412329_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412404_413355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413443_414358_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414354_415014_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415103_416027_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416032_416488_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416484_417588_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417546_417816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417775_419395_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419391_420450_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420579_421074_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421166_422144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422339_423545_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423541_425053_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425068_426382_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426572_426752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427161_427896_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430340_431291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431422_431821_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432231_432702_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432790_433135_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433234_434635_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436423_436942_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437052_437808_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|438003_439236_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439228_440014_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440080_441052_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441062_442040_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442165_443338_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443364_444393_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444458_445652_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447433_448384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	590438	651628	4108752	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590438_591389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591864_592755_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592751_593573_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593771_594263_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594281_595355_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595401_596505_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596580_597201_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597221_597731_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597785_598037_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598100_599234_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599241_599628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599624_602144_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602572_602911_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602907_603414_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603475_604276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604386_605328_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605421_606957_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608636_610487_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610490_611324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611323_612265_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612516_613488_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613629_615918_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616224_617133_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617187_618153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618227_619889_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619960_620671_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620819_621770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622468_622852_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622909_623512_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623529_623931_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624046_624958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624954_625536_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626330_627065_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627105_628155_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628302_628881_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629267_630245_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630338_634733_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634933_635782_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635940_636753_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636808_637759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637857_638658_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638719_639103_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639114_640467_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640754_641084_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641086_641836_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642018_642939_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642985_643198_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643220_643643_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643659_644760_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644856_646374_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646449_647289_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647310_648183_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648273_649368_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649661_650612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650686_651628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	656952	703143	4108752	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656952_657978_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658018_658258_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658327_659917_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659916_660465_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660545_661118_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661136_662048_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662121_663090_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663212_664286_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664290_666111_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666187_667138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667226_667562_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667695_668346_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668367_669786_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669855_670611_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670579_671338_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671348_672230_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672246_672954_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672956_673715_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673924_675667_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675659_676184_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676223_677018_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677185_678259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678357_679308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679559_679766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679837_680449_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681003_681255_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681247_681937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682193_683144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683783_684269_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684255_685533_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685535_686954_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686982_688038_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688043_688286_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688408_689011_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689439_690390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691064_691316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691378_691861_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691874_692063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692062_692458_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692454_692853_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692849_693272_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693279_693780_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694034_694553_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694562_694892_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694909_695200_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695225_697838_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697847_698207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698274_698808_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698804_699194_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699186_703143_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	709309	763239	4108752	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709309_711040_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711092_711521_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711523_712204_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712203_712662_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712698_713673_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713689_715006_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715037_715535_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715621_716311_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716310_717360_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717356_718151_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718319_718670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718645_719203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720332_721283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723420_724650_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724652_726095_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726199_727345_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727376_728174_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728198_729758_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729754_732127_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732236_733340_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733339_734032_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734175_734877_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734861_735239_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735970_736921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737080_737953_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738293_738512_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738551_739931_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739972_741370_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741409_743062_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743065_743950_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743949_744891_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744969_746589_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746755_747571_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747638_748208_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748208_749159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749813_750911_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750944_752210_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752367_753318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753561_754152_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754167_756612_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756731_757703_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757834_758359_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758318_759269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759490_761686_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761758_762166_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762288_763239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	885828	957545	4108752	transposase	Bacillus_phage(25.0%)	57	NA	NA
WP_023994644.1|885828_886845_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887041_888025_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889623_891012_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891042_892032_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892142_893375_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893656_894457_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894479_896711_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897498_897945_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897966_898713_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898856_899834_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900467_901079_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901072_902290_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902430_903381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903377_904097_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904217_906377_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906467_906737_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906825_907032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907030_907558_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907576_908356_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908523_909540_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909612_910104_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910114_911830_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912993_913944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913940_915773_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916171_916831_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917358_918039_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918320_919037_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919051_920353_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922497_925386_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925609_926962_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926990_927512_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927508_928963_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928997_929246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929351_930227_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930252_931308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930064.1|935679_935901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936060_936273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936392_937511_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937607_937823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938016_938268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938380_939331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939327_939711_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939765_941580_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941729_942557_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942602_943583_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943579_943792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943788_944970_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945133_945868_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945869_948482_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948617_950531_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951146_951557_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951654_952740_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952838_953789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953785_954760_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954884_955796_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956072_956465_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956594_957545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	976967	1048283	4108752	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976967_977918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977998_978910_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978970_980116_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980135_981050_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981121_981871_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981870_982800_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983043_984870_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984952_985594_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985783_986818_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988654_989719_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990516_991425_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992912_994187_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994340_994721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994728_995601_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995906_996287_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996497_997223_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997318_998269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998373_999423_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999560_1000577_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002085_1002658_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002717_1003449_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003500_1004418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005225_1008405_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008401_1009784_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009853_1010105_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010250_1010865_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011051_1013112_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013241_1014093_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014089_1014716_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014712_1016467_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016759_1019465_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019477_1021139_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021151_1022942_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023163_1024339_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024381_1025332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025430_1026171_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026365_1028402_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028419_1029430_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029547_1030741_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030770_1031544_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031540_1032731_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032756_1033695_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033691_1036040_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036194_1036836_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038165_1038318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038349_1038898_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038916_1039402_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039579_1040518_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040520_1040838_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040883_1041828_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043508_1044159_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044212_1044548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044544_1045405_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045421_1045703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045776_1046040_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046283_1047234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1047332_1048283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1060501	1118164	4108752	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1060501_1061518_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062348_1063356_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063352_1064996_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064992_1065880_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066020_1066494_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066483_1067506_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067502_1068930_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069867_1070884_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071216_1072152_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072201_1074082_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074148_1074493_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074637_1075774_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075770_1076844_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077001_1078438_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078528_1079170_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079505_1080522_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1080621_1081197_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1081135_1083883_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083949_1085371_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085634_1086351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086435_1086753_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086793_1087207_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087208_1087568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087610_1089155_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089238_1090069_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090103_1091258_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091300_1092173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092289_1094578_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095784_1096249_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096275_1097226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097593_1098370_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098414_1099272_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099293_1100310_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100444_1101485_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101679_1103761_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103996_1105490_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105720_1106515_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106735_1108094_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108090_1108933_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108951_1110838_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110779_1111031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111075_1111708_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111726_1112329_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112480_1113431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114011_1114719_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115077_1116064_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116203_1117217_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117213_1118164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1125846	1199263	4108752	tRNA,transposase	Catovirus(25.0%)	52	NA	NA
WP_010929591.1|1125846_1126797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126964_1127789_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127788_1128667_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129571_1130687_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130715_1131510_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131506_1133372_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133450_1134083_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134079_1134382_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134424_1135945_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135951_1136707_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136736_1137841_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137943_1139644_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139625_1140603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140612_1141893_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141885_1142581_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142614_1143442_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143723_1146954_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147689_1151616_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153515_1155312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155311_1156280_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156349_1157195_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157262_1157817_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_005012067.1|1157863_1158814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1158912_1159863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159961_1160594_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160760_1163043_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163197_1165894_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166019_1166508_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168918_1171789_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171834_1173049_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173278_1174706_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174803_1175895_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175907_1176666_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176753_1177656_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177652_1178603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178732_1179716_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179770_1180493_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181971_1183327_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183407_1185783_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185947_1188023_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1188084_1188879_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188986_1189949_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189936_1190692_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190799_1192437_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192504_1193242_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193344_1193920_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1194092_1194629_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194661_1194976_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194991_1195837_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195875_1197255_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197332_1198214_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198312_1199263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1319286	1387773	4108752	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319286_1320237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321005_1321644_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322533_1322980_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323061_1323763_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323763_1324531_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324527_1325766_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325765_1326692_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326794_1327910_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327925_1328876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329229_1329811_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329807_1330641_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330851_1332165_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332341_1333223_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1333242_1334094_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334146_1335235_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335345_1336473_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336707_1337319_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337417_1338368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338589_1338967_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339114_1339612_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339608_1340136_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1340269_1341085_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341097_1342279_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342326_1343220_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343346_1343817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343942_1344770_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344798_1345575_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345571_1345847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345861_1346326_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346337_1347039_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347148_1347649_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347731_1348910_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350537_1350873_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351060_1352509_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352566_1352911_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353017_1353557_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353649_1354600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354698_1355106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355338_1355770_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355951_1356356_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357592_1357916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357918_1358806_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358838_1359264_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359335_1359689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359928_1360435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360473_1361805_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361864_1362680_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362676_1363531_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366593_1369137_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370503_1372258_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1372254_1374375_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374379_1376575_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376571_1379913_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382715_1383666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383731_1383911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384027_1384783_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384769_1385915_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386822_1387773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1448264	1503752	4108752	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1448264_1449215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450416_1450863_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450855_1452331_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452327_1453083_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453075_1454086_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454075_1455752_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456064_1456397_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456410_1456806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456815_1457142_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457138_1457465_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457391_1458414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458410_1458761_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458808_1459237_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1459244_1460618_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460758_1461136_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461398_1462706_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462766_1463597_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463593_1464082_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464123_1465644_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465687_1466164_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466967_1469565_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469594_1470416_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471142_1471892_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472075_1472954_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473051_1473768_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473782_1474343_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474509_1475274_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475293_1476151_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476147_1477347_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477386_1478721_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478773_1481110_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481235_1481799_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481807_1482899_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482970_1483426_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483426_1484221_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484217_1485399_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485385_1485991_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485987_1486761_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486772_1487600_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487761_1490125_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490192_1490912_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491035_1491461_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491495_1492446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492563_1493490_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493555_1494713_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494693_1495161_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495308_1496259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1496275_1496710_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496699_1497050_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1497246_1498401_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498397_1499570_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499617_1500511_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500556_1500994_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501053_1501743_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501752_1502703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502801_1503752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1796322	1844337	4108752	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930048.1|1796322_1797273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1797371_1798322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1798420_1801021_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801127_1802132_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1802240_1803581_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1803621_1804650_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1804845_1805391_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1805387_1805948_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806046_1806997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807034_1807622_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1807639_1808023_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1809382_1810675_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1810809_1811850_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1811947_1812964_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1813231_1813867_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814004_1814763_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1814747_1815527_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1815544_1816429_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1816425_1817205_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1817231_1817909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818197_1818950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819068_1820469_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1820492_1820891_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821066_1821267_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1821405_1822134_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1822267_1823683_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1823686_1824550_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1824562_1825312_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1825554_1827510_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1827491_1828160_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1828934_1829885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1830033_1830372_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1830429_1830591_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1830622_1830823_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1831088_1833662_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1833732_1836282_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1838832_1839321_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1839412_1840564_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1840617_1841439_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1841477_1842707_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1842835_1843276_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1843386_1844337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1905899	1965169	4108752	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1905899_1906850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1906974_1907784_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1907984_1908935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1910208_1911426_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1912482_1913385_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1913461_1914334_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1914464_1914833_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1914890_1915937_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1916132_1917389_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1917393_1918731_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1918880_1919837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1919939_1920872_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1920987_1921308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1921300_1921660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1921707_1923282_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1923334_1924279_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1924296_1925127_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1925119_1926754_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1926750_1928106_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1929012_1930590_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1930593_1931868_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1931965_1932340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1934055_1935189_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1935226_1935832_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1935828_1936647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1936718_1939343_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1939329_1939584_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1939650_1940232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1940535_1940796_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1940961_1941585_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1941584_1942358_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1942354_1943563_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1943588_1944062_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1944135_1945086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1945184_1946135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1946233_1947583_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1948348_1949104_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1949196_1952079_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1952401_1952827_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1952854_1954003_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1953999_1954506_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1954521_1955808_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1955857_1957153_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1957154_1957793_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1957798_1958956_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1958982_1960338_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1960341_1961412_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1961550_1961787_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1961874_1962981_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1962946_1964251_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1964269_1965169_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	1975409	2019732	4108752	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1975409_1976360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976458_1977409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1977608_1978694_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1978709_1979471_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1979467_1980391_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1980489_1981014_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1981022_1981766_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1981861_1982101_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1982114_1982267_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1982352_1983843_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1983934_1984873_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1984869_1985046_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1985048_1985711_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1987332_1987476_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1987472_1988447_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1988613_1989564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1989560_1990835_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1990938_1992132_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1992128_1992782_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1992778_1994215_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1994202_1994562_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1995376_1995517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1995534_1996485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1997530_1999396_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1999653_2001174_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2001261_2001912_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2002860_2004156_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2004177_2005062_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2005160_2006036_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2006025_2006382_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2006512_2007487_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2007616_2007796_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2007893_2008418_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2008428_2009265_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2009377_2009749_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2009745_2010297_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2010312_2012004_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2012052_2012733_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2012980_2013445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2013614_2014544_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2014556_2015204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2015277_2017095_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2017178_2018129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2018781_2019732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2049505	2113874	4108752	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2049505_2050456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2050677_2051628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2051726_2052692_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062826582.1|2052829_2053729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2056323_2057811_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2057821_2059018_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2059090_2060410_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2060406_2061282_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2061312_2062461_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2062478_2062793_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2062814_2063537_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2063536_2064355_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2064359_2064887_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2064892_2066149_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2066507_2067647_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2067724_2068597_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2069467_2070418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2070377_2071013_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2071372_2072695_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2073013_2073835_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2075259_2075832_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2075871_2077701_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2077663_2078722_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2078759_2079221_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2079305_2080052_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2081542_2084773_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2084839_2086171_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2086423_2086798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2086900_2088079_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2088089_2088680_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2088790_2089597_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2089622_2090417_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2091417_2092392_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2092550_2093063_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2093219_2094191_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2095935_2096742_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2096738_2098040_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2097990_2098755_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2098868_2099639_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2099723_2100911_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2100983_2101358_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2101458_2102721_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2102717_2103575_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2103747_2104749_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2105200_2106151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2107714_2108866_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2109234_2109471_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2109534_2109702_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2109815_2111711_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2111874_2112825_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2112923_2113874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2300342	2361690	4108752	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2300342_2301293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2301409_2302129_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2302301_2303288_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2303288_2303771_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2303774_2305058_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2305054_2305993_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2305989_2307699_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2307708_2308956_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2310566_2311856_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2312993_2313767_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2314428_2315172_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2315246_2315987_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2316182_2317019_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2317069_2317840_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2317889_2318942_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2318938_2319565_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2319561_2320596_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2320774_2321791_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2321889_2322840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2325580_2326870_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2326988_2327426_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2327469_2328678_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2328824_2329289_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2329312_2330263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2331247_2332021_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2332017_2333016_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2333100_2333877_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2334032_2335637_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2336017_2337142_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2337268_2337892_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2337888_2339790_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2339838_2340633_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2340645_2341647_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2341643_2342093_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2342142_2342991_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2343088_2343631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2343674_2344625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2344780_2345107_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2345103_2345385_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2345384_2345864_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2345860_2347489_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2347485_2347830_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2347829_2350763_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2351921_2352872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2352970_2353267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2353373_2354291_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2354295_2355009_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2355022_2355994_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2357743_2358094_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2358097_2359285_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2359723_2360446_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2360739_2361690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2382481	2453635	4108752	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2382481_2383432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2383984_2385610_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2385659_2386694_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2386696_2388043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2388039_2389554_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2389544_2390555_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2391028_2391970_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2391978_2392947_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2394486_2395455_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2395632_2396622_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2396668_2397427_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2397616_2398354_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2398452_2399403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2399587_2400370_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2400363_2401065_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2401304_2401907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2403233_2404184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2404180_2405737_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2405729_2406503_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2406561_2407512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2407593_2408769_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2408782_2410840_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2410836_2411862_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2411873_2413163_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2413185_2414283_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2414279_2415170_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2415166_2417251_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2417282_2418452_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2418493_2419234_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2419233_2420004_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2420859_2421645_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2421671_2423756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2423923_2425879_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2426202_2426703_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2426801_2428328_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2428465_2429353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2429367_2430321_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2430372_2432463_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2432478_2432865_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2435558_2436362_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2437655_2438558_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2438622_2439399_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2439720_2440770_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2440893_2442564_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2442568_2443363_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2443461_2444412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2444431_2445337_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2445414_2446113_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2446272_2447217_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2447226_2448714_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2448713_2449781_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2449844_2451257_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2451442_2452663_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2452684_2453635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2538884	2601185	4108752	tRNA,transposase	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2538884_2539835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2539933_2540704_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2540700_2541372_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2541368_2542010_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542022_2542943_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543103_2544264_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2544305_2545256_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2545854_2546079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2546243_2547938_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548059_2548329_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2548444_2548843_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2548853_2549810_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2549946_2550492_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2550512_2552462_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2552849_2553626_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2553631_2554024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2554445_2555396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2555392_2556490_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2556521_2557472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2559253_2560495_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560506_2561280_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561306_2562257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562355_2563138_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563226_2564453_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565178_2566564_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566582_2567188_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567184_2569041_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569037_2569838_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569852_2571046_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571113_2572088_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572210_2573434_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573544_2575749_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576043_2576703_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576710_2576917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2577255_2578011_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2578281_2578797_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579069_2579387_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579574_2579811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580101_2581457_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581503_2582844_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582945_2583578_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583577_2585947_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585979_2586939_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586925_2587612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587608_2587941_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2588056_2589007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589003_2591070_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591069_2591342_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592036_2592126_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592125_2593910_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2593933_2596099_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596109_2596709_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2599530_2600226_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600234_2601185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2687302	2755038	4108752	tRNA,transposase	Salmonella_phage(22.22%)	57	NA	NA
WP_010929591.1|2687302_2688253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688363_2688546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688645_2689242_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689425_2690517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691016_2691427_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2691485_2691815_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2691832_2694250_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2694262_2695285_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695359_2695719_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695734_2695932_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2696267_2697218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697411_2697861_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_023853496.1|2700452_2700698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820420.1|2702031_2702745_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702867_2703095_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703389_2704028_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704136_2705171_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705167_2706118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706533_2707058_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707061_2707331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707529_2708591_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708674_2710309_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710310_2711114_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711142_2712102_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712105_2713620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713656_2714661_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715092_2715563_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715598_2716210_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2716240_2716864_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716944_2718477_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2718511_2719729_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719796_2720828_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720824_2721994_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2721987_2722668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2722829_2723672_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723834_2724806_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724977_2725856_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725878_2726949_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726989_2727940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931030.1|2728232_2729591_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2729702_2731430_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2732051_2733002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2733751_2734165_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2734178_2735414_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2735421_2736216_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2736212_2737016_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2737042_2738020_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2738048_2739620_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2739630_2740452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2742176_2743607_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2743619_2744309_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2744404_2745745_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2745746_2746004_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2746357_2747950_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2748046_2749507_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2749729_2750341_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2754087_2755038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2783405	2856275	4108752	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783405_2783822_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783932_2784565_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784593_2785037_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785058_2786150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2786204_2787005_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787140_2787761_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2787900_2788374_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789513_2790464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790460_2798122_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798362_2802409_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802721_2803303_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803299_2804598_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804677_2805706_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805966_2806917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806913_2807864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808180_2808786_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808839_2810153_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810227_2810698_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810697_2811486_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811496_2813149_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2813236_2814187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815348_2815855_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815851_2816616_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816631_2816916_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816980_2817970_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818141_2819071_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819042_2819729_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819762_2820308_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820352_2821618_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821614_2822517_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823698_2824643_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824737_2826255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826296_2827925_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828032_2828914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832026_2832401_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832425_2832764_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832807_2834442_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834480_2835827_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835934_2837356_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837425_2838010_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838112_2839063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839197_2840304_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840314_2841412_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841556_2842762_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842768_2843290_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843286_2843769_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843774_2844026_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844006_2844492_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844627_2848089_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848106_2848991_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849000_2849432_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849678_2850182_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850259_2851660_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851734_2852610_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852606_2853614_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854081_2854387_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854477_2855068_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855258_2856275_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2859418	2926230	4108752	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2859418_2860369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860467_2861418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861414_2862209_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2862240_2862945_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863019_2863820_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863816_2864224_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2864220_2864862_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864854_2866855_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868115_2869447_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869443_2870394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872100_2872367_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873074_2873413_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877967_2878570_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878666_2879956_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880013_2880745_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880741_2881545_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881541_2882630_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882626_2883556_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883704_2884850_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884871_2885822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886152_2889974_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890130_2890799_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890803_2892477_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892495_2893815_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893819_2896135_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896190_2898359_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898355_2903536_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903634_2903949_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904176_2904422_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904516_2905035_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905134_2906340_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906455_2907853_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907969_2908548_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908620_2910012_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910179_2911130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911410_2912031_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912027_2912441_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912437_2913481_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913536_2913725_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913734_2914499_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914589_2915246_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915337_2916096_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916121_2917723_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917923_2918928_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919028_2919292_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919409_2920186_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920776_2921727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924110_2925223_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925279_2926230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	2956616	3000307	4108752	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956616_2957567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957687_2958584_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960861_2963087_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963251_2964340_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964296_2964950_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964997_2965795_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966326_2967277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967357_2968506_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968562_2969513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969611_2969917_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969945_2970380_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970381_2971626_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971622_2972333_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972347_2973259_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973621_2974026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974022_2974481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974487_2975396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975392_2976259_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2976245_2977073_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977083_2978211_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979288_2980527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980568_2981831_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981837_2982590_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982641_2982827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983102_2983567_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983598_2984258_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984402_2986511_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986507_2987458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987561_2988182_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988285_2989026_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990160_2991285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991330_2991699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991940_2992891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993926_2994469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994854_2995805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995801_2996710_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996836_2997673_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998185_2999295_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999356_3000307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	3381302	3501547	4108752	tRNA,transposase	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3381302_3382253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382657_3383302_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383326_3383911_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384011_3384629_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384631_3386347_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386343_3386652_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386668_3387286_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387330_3387633_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387733_3388588_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388775_3389000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389169_3389442_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389859_3390267_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390636_3391431_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391531_3392767_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392835_3393852_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393863_3395240_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3395236_3396433_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396429_3397968_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397964_3399224_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401164_3402115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402881_3403976_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403968_3405303_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405256_3405940_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405965_3407129_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3407125_3408127_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408126_3408999_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408995_3409745_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409741_3410533_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410529_3411669_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411944_3412730_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412763_3413546_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413549_3413939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415078_3415942_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415977_3417066_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417062_3418013_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418366_3421345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422271_3423150_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425098_3426049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3426147_3427098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427094_3427562_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427604_3428375_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428395_3429196_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429206_3430616_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430710_3431496_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431735_3432752_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432859_3433252_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433389_3434070_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434074_3435046_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435141_3436092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3437596_3438298_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438297_3439722_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440791_3442132_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3442247_3444011_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444122_3445001_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445113_3445929_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445932_3446184_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446268_3447285_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447615_3447837_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450197_3451115_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451612_3452821_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452900_3454472_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454589_3455525_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455713_3456658_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3457225_3462943_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462948_3464076_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464131_3464758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465029_3466046_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466141_3466852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466848_3467838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467933_3469565_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469567_3470305_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470460_3471333_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471682_3472822_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472818_3473478_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473549_3474182_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474211_3474730_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474740_3475850_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475896_3476751_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476752_3477655_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478877_3479828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481584_3482574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482749_3483538_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483534_3484566_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484584_3485148_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485203_3486724_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486987_3487692_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487699_3488428_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488542_3488917_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488959_3490249_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490245_3491415_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491411_3492251_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492310_3493246_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493258_3494209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494307_3495270_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495301_3495661_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495785_3496688_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496689_3498462_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498496_3499273_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500596_3501547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	3516485	3575607	4108752	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3516485_3517436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517564_3518698_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518741_3519647_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519649_3521350_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521346_3522267_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522274_3523252_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523310_3524345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526319_3526556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526682_3527546_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527634_3528456_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528535_3529273_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529269_3530262_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530414_3531038_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531082_3532231_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534554_3535505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535845_3536796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536894_3537845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538141_3538639_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538681_3540457_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540464_3541331_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541337_3542072_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543241_3544036_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544325_3544916_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544949_3546278_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546352_3547498_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547609_3548608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548570_3549005_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550521_3551406_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551402_3552608_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552604_3553465_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553577_3555368_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555408_3556053_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556074_3556383_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556548_3557835_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3559268_3560219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3560317_3561268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563219_3564434_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564539_3565529_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565525_3566134_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566146_3566776_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566772_3567393_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567424_3568216_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569067_3569523_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569541_3570468_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570521_3571808_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572738_3573611_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573607_3574558_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574656_3575607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012081	Bordetella pertussis strain I351 chromosome, complete genome	4108752	4007820	4072732	4108752	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007820_4008306_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008394_4008532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008524_4009505_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009771_4010581_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010620_4011301_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011294_4011753_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011764_4012127_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012209_4012893_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012948_4013257_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013275_4013590_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013586_4016061_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016068_4017460_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017456_4017642_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017620_4018322_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018318_4019140_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019120_4020245_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4020237_4021257_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021462_4022353_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022597_4023389_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023471_4023846_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023823_4025233_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4025225_4026608_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026942_4028547_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028624_4029596_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029606_4030533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030923_4031874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032043_4033270_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033469_4034336_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034328_4035291_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035391_4036342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036440_4037391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037489_4038440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038436_4039930_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039926_4043034_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043030_4046099_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046095_4047346_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047526_4048279_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048320_4048965_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048973_4049954_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050053_4050797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050879_4051227_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051324_4052167_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052211_4053099_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053125_4053314_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053411_4054869_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054855_4056382_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056400_4056868_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056867_4057890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058010_4058751_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058805_4059906_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059907_4061098_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061217_4062234_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062552_4063224_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063220_4064129_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064340_4064988_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068848_4069916_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069926_4070736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070825_4071599_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071781_4072732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
