The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	27282	70036	4107443	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	77634	136108	4107443	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	164893	225404	4107443	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	233336	286924	4107443	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	390857	448366	4107443	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	590420	651611	4107443	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639097_640531_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	656935	703126	4107443	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	709292	763222	4107443	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761741_762170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	854100	903364	4107443	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854100_855051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855068_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857293_858109_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	912976	977916	4107443	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965082_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	997316	1048281	4107443	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037986_1039120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1060499	1118945	4107443	tRNA,protease,transposase,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062304_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1082577_1083528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084730_1086152_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086415_1087132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087216_1087534_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087574_1087988_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087989_1088349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088391_1089936_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090019_1090850_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090884_1092039_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092081_1092954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093070_1095359_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096565_1097030_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097056_1098007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098024_1098162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098374_1099151_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099195_1100053_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100074_1101091_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101225_1102266_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102460_1104542_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104777_1106271_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106501_1107296_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107516_1108875_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108871_1109714_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109732_1111619_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111560_1111812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111856_1112489_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112507_1113110_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113261_1114212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114792_1115500_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115858_1116845_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116984_1117998_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117994_1118945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1158644	1220815	4107443	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1158644_1159595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1159693_1160317_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1160490_1162773_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162927_1165624_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165749_1166238_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168648_1171519_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171564_1172779_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173008_1174436_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174533_1175625_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175637_1176396_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176483_1177386_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177382_1178333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178462_1179446_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179500_1180223_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181701_1183057_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183137_1185513_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1185677_1187753_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1187814_1188615_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188716_1189679_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189666_1190422_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190529_1192167_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192234_1192972_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193074_1193650_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193822_1194359_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1194361_1194706_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194721_1195567_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1195605_1196985_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197062_1197944_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198042_1198993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198989_1199400_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199507_1200362_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200354_1201317_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201362_1202487_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202592_1203471_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203595_1204375_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204528_1205950_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206384_1208082_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208308_1209250_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209576_1210323_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210330_1211257_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211378_1212296_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212335_1213289_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213313_1213892_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215565_1216174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216251_1216605_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216688_1217678_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1217674_1217863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1217880_1218831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218917_1219868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1219864_1220815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1271743	1328954	4107443	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1271743_1272694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1276440_1277052_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1277274_1278735_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1278831_1280424_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1280777_1281035_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1281036_1282377_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1282472_1283162_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1283174_1284605_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1286329_1287151_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1287161_1288733_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1288761_1289739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1289765_1290569_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1290565_1291360_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1291367_1292603_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1292595_1293030_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1293779_1294730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295351_1297079_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297190_1298549_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1298605_1298824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1298841_1299792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1299832_1300903_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300925_1301804_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301975_1302947_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1303109_1303952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1304113_1304794_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1304787_1305957_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1305953_1306985_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1307028_1308270_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1308304_1309837_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309917_1310541_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1310571_1311183_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1311218_1311689_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1312120_1313125_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1313161_1314676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1314679_1315639_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1315667_1316471_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1316472_1318107_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1318190_1319252_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1319450_1319720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1319723_1320248_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1320663_1321614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1321610_1322645_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1322753_1323392_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1323686_1323914_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1324036_1324750_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324994_1325945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1326048_1326330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1326444_1327893_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1328003_1328954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1419187	1471340	4107443	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1419187_1420138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1420155_1420308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1420304_1420658_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420670_1421033_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421074_1421500_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421702_1422959_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423157_1424138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424287_1425529_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425627_1426578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426586_1427282_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430103_1430703_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430713_1432879_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432902_1434687_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434686_1434776_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435470_1435743_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435742_1437809_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437805_1438756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438854_1439805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439920_1440253_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440249_1440936_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1440922_1441882_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1441923_1444284_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444283_1444916_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1445017_1446358_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446404_1447760_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1447885_1448530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448474_1448792_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449064_1449580_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1449673_1449835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1449850_1450606_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450944_1451151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451158_1451818_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452112_1454317_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454427_1455651_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455773_1456748_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456815_1458009_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1458023_1458824_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458820_1460677_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460673_1461279_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461297_1462683_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463408_1464635_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1464723_1465506_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465604_1466555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466581_1467355_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467366_1468608_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470389_1471340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1515265	1583350	4107443	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1515265_1515754_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1515871_1516450_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516555_1516924_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1517022_1517973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517979_1519092_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519778_1520981_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1521016_1521163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1521184_1523845_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1523857_1527262_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527929_1530155_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530201_1530528_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530578_1531187_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531285_1532236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532305_1533070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1533066_1533666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533769_1534621_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534680_1535307_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535303_1536254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536352_1537465_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537454_1538456_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538561_1540073_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540069_1541374_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541485_1542046_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542313_1542868_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543323_1543539_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543793_1546391_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546387_1547575_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1548232_1548847_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1548935_1550063_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550074_1550980_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551872_1552823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1553004_1553757_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553825_1554485_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554481_1555210_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555222_1557502_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557526_1557730_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557771_1558404_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558539_1559457_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559453_1560167_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560404_1561175_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561179_1561779_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562023_1563514_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563572_1563857_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1563994_1564150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564422_1565349_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565485_1566226_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566392_1567769_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567950_1568856_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570507_1572310_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572436_1573078_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573176_1574127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574148_1575369_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575554_1576967_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577030_1578098_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578097_1579585_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579594_1580539_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580698_1581397_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581474_1582380_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582399_1583350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1619299	1674890	4107443	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619299_1620250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620308_1621082_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621074_1622631_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622627_1623578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624904_1625507_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625746_1626448_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626441_1627224_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627408_1628359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628457_1629195_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629384_1630143_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630189_1631179_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631356_1632325_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633864_1634833_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634841_1635783_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636256_1637267_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637257_1638772_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638768_1640115_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1640117_1641152_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641201_1642827_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643379_1644330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644434_1645382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645435_1647250_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647242_1647917_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648046_1651121_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651134_1651434_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651748_1652372_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1652615_1653485_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653462_1654407_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654492_1655419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655531_1656311_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656301_1657498_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657528_1658479_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658700_1659390_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659454_1660210_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660261_1661254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661263_1662217_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662332_1663295_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664696_1665125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665121_1666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1666365_1667103_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667526_1668714_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1668717_1669098_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670817_1671789_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671802_1672516_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672520_1673438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673544_1673841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673939_1674890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1832657	1891927	4107443	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832657_1833608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833732_1834542_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1834742_1835693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836966_1838184_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839240_1840143_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840219_1841092_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841222_1841591_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841648_1842695_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842890_1844147_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844151_1845489_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845638_1846595_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846697_1847630_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847745_1848066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1848058_1848418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848465_1850040_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850092_1851037_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851054_1851885_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851877_1853512_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853508_1854864_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855770_1857348_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857351_1858626_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858723_1859098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860813_1861947_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861984_1862590_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862586_1863405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863476_1866101_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866087_1866342_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866408_1866990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867293_1867554_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867719_1868343_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868342_1869116_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869112_1870321_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870346_1870820_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870893_1871844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871942_1872893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872991_1874341_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875106_1875862_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875954_1878837_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879159_1879585_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879612_1880761_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880757_1881264_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1881270_1882566_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1882624_1883911_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883912_1884551_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1884553_1885714_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885740_1887096_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887099_1888170_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888308_1888545_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888632_1889739_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889704_1891009_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891027_1891927_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1902167	1946490	4107443	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1902167_1903118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903216_1904167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904366_1905452_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905467_1906229_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1906225_1907185_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1907247_1907748_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907780_1908524_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908619_1908859_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908872_1909025_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909110_1910601_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910692_1911631_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911627_1911804_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911806_1912469_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914090_1914234_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914230_1915205_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1915099_1915354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1915371_1916322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916318_1917593_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917696_1918890_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918886_1919540_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919536_1920973_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920960_1921320_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922134_1922275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922292_1923243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924288_1926154_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926411_1927932_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928019_1928670_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1929618_1930914_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930935_1931820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931918_1932794_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932783_1933140_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933270_1934245_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934374_1934554_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934651_1935176_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935186_1936023_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936135_1936507_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936503_1937055_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937070_1938762_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938810_1939491_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939738_1940203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940372_1941302_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941314_1941962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942035_1943853_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943936_1944887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945539_1946490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	1976263	2040632	4107443	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976263_1977214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977435_1978386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978484_1979450_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979587_1980487_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983081_1984569_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984579_1985776_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1985848_1987168_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987164_1988040_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988070_1989219_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989236_1989551_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989572_1990295_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990294_1991113_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991117_1991645_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991650_1992907_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993265_1994405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994482_1995355_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996225_1997176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997135_1997771_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998130_1999453_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999771_2000593_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2002017_2002590_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002629_2004459_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004421_2005480_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005517_2005979_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006063_2006810_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008300_2011531_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011597_2012929_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013181_2013556_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013658_2014837_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2014847_2015438_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015548_2016355_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016380_2017175_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018175_2019150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019308_2019821_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019977_2020949_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2022693_2023500_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2023496_2024798_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2024748_2025513_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025626_2026397_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026481_2027669_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027741_2028116_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2028216_2029479_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029475_2030333_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030505_2031507_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031958_2032909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2034424_2035624_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035992_2036229_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036292_2036460_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2036573_2038379_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2038632_2039583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039681_2040632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2172155	2229434	4107443	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2172155_2173106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173204_2175199_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175258_2176224_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176213_2179075_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179077_2179584_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179688_2180897_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180898_2181837_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181998_2182472_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182468_2183419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183529_2183970_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184098_2185328_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185366_2186188_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186241_2187393_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187484_2187973_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190523_2193073_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193143_2195717_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195982_2196183_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196214_2196376_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196433_2196772_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196920_2197871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198645_2199314_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2199295_2201311_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2201493_2202243_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202255_2203119_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203122_2204538_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204671_2205400_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205538_2205739_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205914_2206313_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206336_2207737_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207855_2208608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2208896_2209496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209600_2210380_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210376_2211261_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211278_2212058_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212042_2212801_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2212926_2213574_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213841_2214858_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214955_2215996_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216130_2217423_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218782_2219166_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219183_2219771_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219808_2220759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2220857_2221418_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2221414_2221960_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2222155_2223184_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2223224_2224565_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2224673_2225678_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2225784_2228385_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2228483_2229434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2477069	2535313	4107443	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477069_2478020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478499_2479156_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479170_2480838_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480840_2481470_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481681_2482776_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482920_2483733_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483736_2485440_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485490_2486621_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486807_2487884_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487965_2488616_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488630_2490034_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490317_2491136_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491132_2491837_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492736_2493852_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493885_2494260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494282_2495440_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495452_2495686_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496320_2499290_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499304_2499514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499665_2500295_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500291_2502382_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502405_2503086_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503082_2503643_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503649_2504747_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504899_2505493_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505489_2506782_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506795_2507338_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507347_2508184_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508217_2509279_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509320_2510373_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510388_2510691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510832_2511783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511800_2511965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511961_2513656_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513652_2514738_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514785_2515685_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515695_2516340_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517361_2520604_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520614_2521769_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521995_2522958_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523056_2524007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524105_2525056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525065_2525755_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525814_2526252_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526297_2527191_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527238_2528411_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528407_2529562_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529758_2530109_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530098_2530533_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530549_2531500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531647_2532115_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532095_2533253_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533318_2534245_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534362_2535313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2577591	2644091	4107443	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577591_2578542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578911_2579484_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579486_2580497_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580489_2580990_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581000_2581342_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581353_2582145_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582161_2582431_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582453_2583242_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583288_2584305_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584521_2585964_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586142_2587762_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587882_2589703_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589781_2591314_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591347_2592994_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593063_2594086_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594103_2595237_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595239_2595929_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595928_2596714_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596757_2597522_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597560_2598982_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599047_2599752_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599799_2600219_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600231_2600639_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600822_2601533_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601659_2601950_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601967_2602450_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606955_2608110_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608415_2609432_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609678_2610467_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610533_2611214_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611210_2611981_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612079_2613030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613085_2614003_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614013_2615192_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615211_2616207_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617795_2618404_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618391_2619432_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619449_2620412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620408_2621602_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621598_2622396_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622421_2623408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623426_2625466_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625667_2626348_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626361_2627273_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627269_2627848_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627986_2628892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628899_2632319_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632306_2634907_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635862_2636495_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636888_2637647_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637643_2638846_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639033_2639984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640891_2642037_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642023_2642779_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642895_2643075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643140_2644091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2672206	2709618	4107443	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672206_2673157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673255_2674206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674298_2674838_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674944_2675289_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675346_2676795_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676982_2677318_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678945_2680124_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680206_2680707_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680816_2681518_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681529_2681994_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682008_2682284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682280_2683057_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683085_2683913_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684038_2684509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684635_2685529_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685576_2686758_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686770_2687586_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687719_2688247_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688243_2688741_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688888_2689266_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689487_2690438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690536_2691148_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691382_2692510_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692620_2693709_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693761_2694613_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694632_2695514_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695690_2697004_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697214_2698048_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698044_2698626_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698979_2699930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699945_2701061_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701163_2702090_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702089_2703328_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703324_2704092_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704092_2704794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704875_2705322_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706211_2706850_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707618_2708569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708667_2709618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2808744	2863261	4107443	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808744_2809695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810023_2810629_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810682_2811996_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812070_2812541_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812540_2813329_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813339_2814992_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815079_2816030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817191_2817698_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817694_2818459_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818474_2818759_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818823_2819813_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819984_2820914_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820885_2821572_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821605_2822151_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822195_2823461_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823457_2824360_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825541_2826486_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826580_2828098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828139_2829768_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829875_2830757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833869_2834244_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834268_2834607_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834650_2836285_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836323_2837670_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837777_2839199_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839268_2839853_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839955_2840906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841040_2842147_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842157_2843255_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843399_2844605_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844611_2845133_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845129_2845621_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845617_2845869_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845849_2846335_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846470_2849932_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849949_2850834_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850843_2851275_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851521_2852025_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852102_2853503_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853577_2854453_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854449_2855457_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855924_2856230_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856320_2856911_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857101_2858118_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858309_2860646_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860728_2861163_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861261_2862212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862310_2863261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2871286	2928072	4107443	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871286_2872237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873943_2874210_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874917_2875256_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879809_2880412_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880508_2881798_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881855_2882587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882583_2883387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883383_2884472_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884468_2885398_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885546_2886692_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886713_2887664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887681_2887840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887994_2891816_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891972_2892641_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892645_2894319_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894337_2895657_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895661_2897977_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898032_2900201_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900197_2905387_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905476_2905791_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906018_2906264_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906358_2906877_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906976_2908182_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908297_2909695_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909811_2910390_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910462_2911854_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912021_2912972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913252_2913873_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913869_2914283_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914279_2915323_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915378_2915567_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915576_2916341_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916431_2917088_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917179_2917938_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917963_2919565_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919765_2920770_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920870_2921134_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921251_2922028_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922618_2923569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925952_2927065_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927121_2928072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	2958458	3002149	4107443	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958458_2959409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959426_2959576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959529_2960426_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962703_2964929_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965093_2966182_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966138_2966792_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966839_2967637_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968168_2969119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969193_2970348_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970404_2971355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971453_2971759_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971787_2972222_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972223_2973468_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973464_2974175_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974189_2975101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975463_2975868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975864_2976323_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976329_2977238_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977234_2978101_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978087_2978915_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978925_2980053_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981130_2982369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982410_2983673_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983679_2984432_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984483_2984669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984944_2985409_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985440_2986100_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986244_2988353_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988349_2989300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989403_2990024_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990115_2990868_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992002_2993127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993172_2993541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993782_2994733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995768_2996311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996508_2996679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996696_2997647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997643_2998609_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998678_2999515_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000027_3001137_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001198_3002149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	3382094	3435835	4107443	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382094_3383045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383449_3384094_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384118_3384703_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384803_3385421_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385423_3387139_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387135_3387444_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387460_3388078_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388122_3388425_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388525_3389380_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389567_3389792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389961_3390234_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390651_3391059_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391428_3392223_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392323_3393559_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393627_3394644_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394655_3396032_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396028_3397225_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397221_3398760_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398756_3400016_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401956_3402907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403673_3404768_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404760_3406095_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406048_3406732_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406757_3407921_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407917_3408919_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408918_3409791_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409787_3410537_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410533_3411325_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411321_3412461_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412736_3413522_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413555_3414338_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414341_3414731_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415870_3416734_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416769_3417858_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417854_3418805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419158_3422137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423063_3423942_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425890_3426841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426837_3427305_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427347_3428118_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428138_3428939_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428949_3430359_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430453_3431239_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_077069136.1|3431478_3432495_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432602_3432995_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433132_3433813_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433817_3434789_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434884_3435835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	3441990	3501288	4107443	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441990_3443754_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443865_3444744_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444856_3445672_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445675_3445927_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446011_3447028_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447358_3447580_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449940_3450858_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451355_3452564_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452643_3454215_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454332_3455268_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455456_3456401_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456968_3462686_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462691_3463819_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463874_3464501_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464772_3465789_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465884_3466595_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466591_3467581_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467676_3469308_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469310_3470048_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470203_3471076_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471344_3472565_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472561_3473221_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473292_3473925_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473954_3474473_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474483_3475593_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475639_3476494_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476495_3477398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478620_3479571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481325_3482315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482311_3482470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482490_3483279_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483275_3484307_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484325_3484889_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484944_3486465_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486728_3487433_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487440_3488178_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488283_3488658_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488700_3489990_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489986_3491156_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491152_3491992_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492051_3492987_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492999_3493950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494048_3495011_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495042_3495402_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495526_3496429_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496430_3498203_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498237_3499014_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500337_3501288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	3516226	3574299	4107443	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516226_3517177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517305_3518439_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518482_3519388_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519390_3521091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521087_3522008_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522015_3522993_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523051_3524086_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526060_3526297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526423_3527287_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527375_3528197_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528276_3529014_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529010_3530003_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530116_3530779_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530823_3531972_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534295_3535246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535586_3536537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536635_3537586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537882_3538380_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538422_3540198_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540205_3541072_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541078_3541813_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542982_3543777_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544066_3544657_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544690_3546019_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546093_3547239_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547350_3548349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548311_3548746_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550262_3551147_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551143_3552349_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552345_3553206_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553318_3555109_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555149_3555815_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555815_3556124_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556289_3557576_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559009_3559960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561911_3563126_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563231_3564221_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564217_3564826_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564838_3565468_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565464_3566085_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566116_3566908_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567759_3568215_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568233_3569160_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569213_3570500_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571430_3572303_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572299_3573250_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573348_3574299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP012087	Bordetella pertussis strain J038 chromosome, complete genome	4107443	4029614	4083046	4107443	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029614_4030565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030734_4031961_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032160_4033027_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033019_4033982_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034082_4035033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035131_4036082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036180_4037131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037127_4038621_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038617_4041725_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041721_4044790_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044786_4046037_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046217_4046979_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047011_4047662_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047664_4048504_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048744_4049488_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049570_4049918_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050015_4050858_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050902_4051790_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051816_4052005_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052102_4053560_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053546_4055073_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055091_4055559_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055558_4056581_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056701_4057421_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057496_4058597_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058598_4059789_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059908_4060925_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061243_4061915_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061911_4062820_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063031_4063679_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067530_4068607_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068617_4069427_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069516_4070290_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070290_4070455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070472_4071423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071311_4072334_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072323_4073478_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073517_4074930_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075054_4075921_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075922_4076747_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076743_4077505_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077585_4078272_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078445_4079453_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079449_4080229_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080286_4081549_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082095_4083046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
