The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	0	59496	4102567	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51189_52140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52182_53439_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54670_55405_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55410_56001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56025_56715_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56711_57473_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57552_58452_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58545_59496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	70133	123782	4102567	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|70133_71084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71177_71492_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72684_74592_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74753_75374_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75405_75987_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76075_76327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76328_77171_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77276_78686_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78682_79633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79707_80652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80648_82523_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83870_84575_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84571_85678_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85939_86533_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86529_87717_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87779_89039_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89062_90151_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90158_91259_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91262_91838_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91841_92894_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93024_94032_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94033_95320_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95516_96320_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96316_97183_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97257_98388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98387_99227_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100159_100762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100791_101445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101577_102834_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102914_103781_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103856_104132_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104139_104802_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104863_105865_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105879_106428_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106485_107382_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107378_108440_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108475_109426_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110325_111519_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111600_112230_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112291_112975_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112984_114667_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114954_115302_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115392_115710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115992_117009_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117084_117885_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117881_118757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118767_120060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120102_121143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121248_122070_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122170_123121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501522.1|123218_123782_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	136866	209388	4102567	tRNA,transposase	Bacillus_phage(16.67%)	58	NA	NA
WP_005012067.1|136866_137817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|138235_139744_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|140490_144453_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|144505_145288_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|145375_146599_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|146582_147515_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|147520_148333_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|149644_150616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|150734_151517_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|152283_153264_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|153260_153989_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|154013_154445_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|154546_155422_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|155473_156673_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|156777_157239_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|157344_158742_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|158738_159416_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|159471_160782_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|160793_161492_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|161655_162432_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|162597_163620_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|163848_164484_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|164489_166043_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|166601_167552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168995_169898_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169875_170505_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170787_172218_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172251_172881_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172929_174537_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174561_175245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175326_175803_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|176009_176960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178075_178603_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178694_179510_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179570_180305_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180342_182421_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182670_182943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183044_184130_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184133_186038_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|186034_189733_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189793_190357_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190364_190787_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190814_191234_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191262_191709_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191835_192333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192487_194758_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194833_196039_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196137_197088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197190_197826_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|197822_198716_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199110_200211_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200292_200667_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200726_203591_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203735_204476_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204545_205757_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205785_206754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207367_208318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|208437_209388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	217320	333202	4102567	tRNA,protease,transposase	uncultured_Caudovirales_phage(12.5%)	104	NA	NA
WP_010929686.1|217320_218271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|218369_219320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|219344_220244_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|220398_220947_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|220985_221705_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|221875_224719_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|225312_228108_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|228565_229498_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|229609_230959_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|230990_231716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_033446325.1|231766_232549_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|232747_233434_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|233433_234078_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|234134_234410_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|234435_234732_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|234777_235557_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|235562_236603_+	cyclase	NA	NA	NA	NA	NA
WP_010929699.1|236707_237031_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|237187_238138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238236_239034_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239983_240394_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241415_242159_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242202_243246_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243416_245519_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246929_247886_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247904_248396_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248392_249748_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249748_250447_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250443_251145_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251397_252447_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252552_253494_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253490_255380_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255466_256105_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256247_257633_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257563_258100_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258251_259643_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259659_260640_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|260775_261759_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261823_262723_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262829_264584_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264591_265716_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265729_266710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267440_268391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268950_269496_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269621_271199_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271214_272369_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272382_272508_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272504_274256_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274252_275932_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275994_276543_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277685_277964_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279007_279958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|279944_280160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280235_280397_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|281063_281513_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281522_282134_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282292_283141_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283166_284549_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284613_285255_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285394_285853_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285877_286654_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929722.1|286707_287844_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287840_288791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288889_289516_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289538_290465_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290473_292060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292056_293061_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293260_294121_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294152_295154_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295224_296034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296111_297971_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298099_299302_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299415_300297_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|301799_302360_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302419_303370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|303561_303849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|303937_304888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929727.1|304884_305883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815019.1|305925_306429_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929728.1|306432_307323_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815015.1|307545_308709_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815013.1|308805_309726_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815011.1|309729_310695_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815010.1|310691_311486_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_010929729.1|311479_312184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_010929730.1|315547_316411_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929731.1|316413_317583_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814996.1|317623_319273_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_003814993.1|319274_319709_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814990.1|319733_320135_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929732.1|320228_321854_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_010929733.1|322093_323377_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_003814984.1|323393_324047_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929734.1|324043_324892_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814980.1|325008_325173_+	rubredoxin	NA	NA	NA	NA	NA
WP_010927118.1|325260_325866_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_010929735.1|325858_326260_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003820560.1|326273_327227_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929736.1|327223_328399_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010929737.1|328518_329259_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929738.1|329295_330129_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929739.1|330125_331304_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_003814960.1|331400_332129_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005013747.1|332251_333202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	392725	525748	4102567	integrase,transposase	Bacillus_virus(13.64%)	109	455733:455750	531255:531272
WP_005012067.1|392725_393676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|393764_394679_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|394675_395335_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|395424_396348_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|396353_396809_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|396805_397909_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|397864_398137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|398096_399716_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|399712_400771_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|400900_401395_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|401487_402465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|402660_403866_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|403862_405374_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|405389_406703_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|406893_407073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|407482_408217_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|410661_411612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|411743_412142_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|412552_413023_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|413111_413456_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|413555_414956_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|416744_417263_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|417373_418129_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929790.1|418324_419557_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|419549_420335_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|420401_421373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|421383_422361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|422486_423659_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|423685_424714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|424779_425973_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|427754_428705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|428803_429709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|429884_430088_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|430598_431039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|431068_431728_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247315.1|431813_433442_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|433450_434914_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|434944_438331_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|438472_438877_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|439020_440007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|439993_440275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|441020_442253_-	dehydratase	NA	NA	NA	NA	NA
WP_010929804.1|442252_442747_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|442878_443841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|443818_445072_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|445193_446144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|446242_447193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|447747_448122_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|448196_449255_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|449278_450229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|453110_454280_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|454380_455988_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
455733:455750	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|456034_458056_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|458084_458330_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|458343_459534_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|459729_460695_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|460717_461857_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|462068_463031_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|463154_465179_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|465375_467619_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|467897_468356_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|469283_471905_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|471968_474596_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|474747_475812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|475811_476582_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|476590_477424_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|477436_478216_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|478289_479723_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|479750_480509_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|480564_482415_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|482508_482985_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|483001_483922_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|484028_484529_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|484902_485595_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|485903_486854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|486970_488038_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929828.1|488113_491242_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|491749_492715_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|492717_493389_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|493545_494505_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|494512_495175_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|495171_496122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|497678_498524_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|498611_499775_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|500193_501165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|501203_502631_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|502750_503542_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|503660_506114_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|506208_507318_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|507320_508730_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|509135_509270_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|509365_509737_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|509733_510006_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|510054_511746_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|511976_512927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|513384_514308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|514316_514715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|514956_516927_+	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|518413_519403_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|519399_519600_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|519712_520054_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_019247983.1|520064_521249_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|521285_521813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|521870_522518_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|522514_523501_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|523504_523687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|523683_524061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|524294_524762_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|524797_525748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
531255:531272	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
>prophage 6
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	655012	723327	4102567	tRNA,transposase	Acanthocystis_turfacea_Chlorella_virus(11.11%)	57	NA	NA
WP_005013747.1|655012_655963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|656061_657012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|657008_657416_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|657412_658081_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|658699_659671_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|659777_660740_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|660858_662580_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|662623_663754_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929936.1|663767_664958_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929937.1|665138_666158_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|666290_667463_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|667455_668130_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|668140_668569_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|668599_669874_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929940.1|670238_671222_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|671305_672250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|672397_674539_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|674538_675318_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|675716_676610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|676673_677693_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|677749_678730_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|678927_680760_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|680909_681398_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929948.1|681419_682604_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|682633_684751_-	crotonase	NA	NA	NA	NA	NA
WP_010929950.1|685008_686811_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|686892_687879_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|687930_690120_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|690116_690914_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|690910_691747_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929955.1|691766_694142_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|694240_695191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|695289_696240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|696962_698237_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|698323_699406_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|699416_700229_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|700265_700592_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|700596_701157_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|701397_702390_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|702408_703404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|703419_704796_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|704788_707170_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|707186_707576_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|707702_707933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|708037_708988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|709086_710037_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|710033_710906_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|711836_713123_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|713176_714103_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|714121_714577_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|715428_716220_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|716251_716872_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|716868_717498_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|717510_718119_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|718115_719105_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|719210_720425_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|722376_723327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	727227	777451	4102567	tRNA,transposase	Catovirus(33.33%)	41	NA	NA
WP_003807038.1|727227_729018_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|729130_729991_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|729987_731193_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|731189_732074_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|733590_734025_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|733987_734986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|735145_736018_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|736358_736577_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_010929975.1|736616_737996_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738037_739435_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|739474_741127_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741130_742015_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742014_742956_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743034_744654_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|744820_745636_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|745703_746273_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|746273_747224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|747878_748976_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749009_750275_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|750432_751383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|751626_752217_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|752232_754677_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|754796_755768_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|755899_756424_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|756383_757334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|757555_759751_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|759823_760231_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|760353_761304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|761419_761863_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|761925_762720_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|762885_764022_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|764092_765226_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|765375_765636_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|765669_765981_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|766405_767554_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|767668_768634_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|768902_769769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|769899_771948_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|771965_773963_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|773997_775335_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_077075908.1|775597_777451_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1045424	1101564	4102567	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	52	NA	NA
WP_005012808.1|1045424_1046375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1046473_1047214_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1047408_1049445_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1049462_1050473_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1050590_1051784_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1051813_1052587_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1052583_1053774_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1053799_1054738_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1054734_1057083_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1057237_1057879_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1059208_1059361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1059392_1059941_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1059959_1060445_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1060622_1061561_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1061563_1061881_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1061926_1062871_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1062891_1064367_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1064551_1065202_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1065255_1065591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1065587_1066448_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1066464_1066746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1066819_1067083_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1067326_1068277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1068575_1069313_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1069748_1070072_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1070106_1070667_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1070787_1071663_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1071675_1072623_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1072724_1073018_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1073044_1075102_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1075116_1075617_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1075690_1077397_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1078260_1079313_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1079365_1079755_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1079763_1080396_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1080495_1081512_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1082342_1083350_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1083346_1084990_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1084986_1085874_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1086014_1086488_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1086477_1087500_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1087496_1088924_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930153.1|1089861_1090878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1091209_1092145_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1092194_1094075_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1094141_1094486_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_005012808.1|1094630_1095581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930155.1|1095679_1096816_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1096812_1097886_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1098043_1099480_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1099570_1100212_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1100547_1101564_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1107539	1248074	4102567	tRNA,holin,transposase	Planktothrix_phage(14.29%)	111	NA	NA
WP_003819794.1|1107539_1107953_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1107954_1108314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1108356_1109901_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1109984_1110815_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1110849_1112004_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1112046_1112919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930166.1|1113035_1115324_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1116530_1116995_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1117021_1117972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1118339_1119116_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1119160_1120018_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1120039_1121056_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_010930170.1|1121190_1122231_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930171.1|1122425_1124507_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1124742_1126236_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1126466_1127261_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1127481_1128840_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1128836_1129679_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1129697_1131584_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1131525_1131777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1131821_1132454_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1132472_1133075_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_077070120.1|1133226_1134177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1134275_1135226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1135806_1136514_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1136872_1137859_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1137998_1139012_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_010930179.1|1139008_1139959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1140071_1140530_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1140566_1141880_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1141897_1142269_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1142265_1143729_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1143869_1144598_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1144579_1147429_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1147641_1148592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1148759_1149584_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1149583_1150462_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1151366_1152482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1152510_1153305_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1153301_1155167_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1155245_1155878_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1155874_1156177_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1156219_1157740_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1157746_1158502_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1158531_1159636_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1159738_1161439_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1161420_1162398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1162407_1163688_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1163680_1164376_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1164409_1165237_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1165518_1168749_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1169484_1173411_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1175310_1177107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1177106_1178075_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1178144_1178990_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1179057_1179612_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1179658_1180609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1180707_1181340_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1181510_1183793_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1183947_1186644_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1186769_1187258_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930203.1|1187293_1189342_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003813631.1|1189666_1192537_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1192582_1193797_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1194026_1195454_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1195551_1196643_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1196655_1197414_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1197501_1198404_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1198400_1199351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1199480_1200464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1200518_1201241_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930208.1|1201708_1202659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930209.1|1203380_1203914_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1203906_1204869_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1204962_1207440_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_033447956.1|1207583_1207865_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_010930210.1|1209509_1209836_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1209984_1210935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1210944_1212300_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1212380_1214756_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1214920_1216996_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1217057_1217852_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1217959_1218922_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1218909_1219665_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1219772_1221410_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1221477_1222215_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1222317_1222893_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1223065_1223602_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1223634_1223949_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1223964_1224810_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1224848_1226228_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1226305_1227187_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1227285_1228236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1228232_1228643_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1228750_1229605_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1229597_1230560_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1230605_1231730_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1231835_1232714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1232838_1233618_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1233771_1235193_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1235627_1237325_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1237551_1238493_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1238819_1239566_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1239573_1240500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1240621_1241539_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1241578_1242532_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1242556_1243135_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1244808_1245417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1245494_1245848_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1245931_1246921_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010929591.1|1247123_1248074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1347210	1413687	4102567	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1347210_1348161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1348929_1349568_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1350457_1350904_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1350985_1351687_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1351687_1352455_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1352451_1353690_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1353689_1354616_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1354718_1355834_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930287.1|1357152_1357734_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1357730_1358564_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1358774_1360088_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1360264_1361146_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1361165_1362017_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1362069_1363158_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1363268_1364396_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1364630_1365242_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_077069213.1|1365340_1366291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1366389_1367340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1367438_1368389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1368610_1368988_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1369135_1369633_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1369629_1370157_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1370290_1371106_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1371118_1372300_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1372347_1373241_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1373367_1373838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1373963_1374791_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1374819_1375596_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1375592_1375868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1375882_1376347_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1376358_1377060_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1377169_1377670_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1377752_1378931_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1380558_1380894_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1381081_1382530_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1382587_1382932_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1383038_1383578_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1383670_1384621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1384719_1385127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1385359_1385791_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1385972_1386377_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1387613_1387937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926674.1|1387939_1388827_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1388859_1389285_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1389356_1389710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1389949_1390456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1390494_1391826_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1391885_1392701_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1392697_1393552_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1396614_1399158_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1400524_1402279_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1402275_1404396_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1404400_1406596_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1406592_1409934_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1412736_1413687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1521516	1580787	4102567	tRNA,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_005012067.1|1521516_1522467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1522584_1523511_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1523576_1524734_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1524714_1525182_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_003811752.1|1525247_1525682_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1525671_1526022_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1526218_1527373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1527369_1528542_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1528589_1529483_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1529528_1529966_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1530025_1530715_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1530724_1531675_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1531773_1532724_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1532822_1533785_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1534011_1535166_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1535176_1538419_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1539440_1540085_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1540095_1540995_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1541042_1542128_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1542124_1543819_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1543997_1544948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1545089_1545392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1545407_1546460_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1546501_1547563_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1547596_1548433_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1548442_1548985_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1548998_1550291_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010930371.1|1550287_1550881_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1551033_1552131_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1552137_1552698_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1552694_1553375_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_023994978.1|1553431_1555489_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930374.1|1555485_1556115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853518.1|1556266_1556476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1556490_1559460_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1560094_1560328_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1560340_1561498_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1561520_1561895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1561928_1563044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1563943_1564648_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1564644_1565463_+	solute-binding protein	NA	NA	NA	NA	NA
WP_010930379.1|1565746_1567150_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1567164_1567815_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1567896_1568973_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1569159_1570290_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930383.1|1570460_1572044_+	membrane protein	NA	NA	NA	NA	NA
WP_010930384.1|1572047_1572860_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930385.1|1573004_1574099_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1574310_1574940_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930387.1|1574942_1576610_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1576624_1577281_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_076879548.1|1577760_1578711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1578742_1579840_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1579836_1580787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1622636	1690721	4102567	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1622636_1623125_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930417.1|1623242_1623821_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1623926_1624295_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1624393_1625344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1625350_1626463_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1627149_1628352_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1628555_1631216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1631228_1634633_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1635300_1637526_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1637572_1637899_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1637949_1638558_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1638656_1639607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1639676_1640441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1640437_1640974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1641140_1641992_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1642051_1642678_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1642674_1643625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1643723_1644836_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1644825_1645827_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1645932_1647444_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1647440_1648745_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1648856_1649417_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1649684_1650239_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1650694_1650910_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1651164_1653762_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1653758_1654946_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1655603_1656218_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1656306_1657428_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|1657445_1658351_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1659243_1660194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1660375_1661128_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1661196_1661856_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1661852_1662581_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1662593_1664873_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1664897_1665101_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1665142_1665775_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1665910_1666828_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1666824_1667538_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1667775_1668546_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1668550_1669150_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1669394_1670885_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1670943_1671228_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1671793_1672720_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1672856_1673597_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1673763_1675140_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1675321_1676227_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1677878_1679681_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1679798_1680449_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1680547_1681498_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1681519_1682740_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1682925_1684338_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1684401_1685469_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1685468_1686956_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1686965_1687910_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1688069_1688768_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1688845_1689751_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1689770_1690721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1726676	1782267	4102567	transposase	Tetraselmis_virus(25.0%)	47	NA	NA
WP_005012067.1|1726676_1727627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1728179_1729805_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1729854_1730889_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1730891_1732238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|1732234_1733749_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1733739_1734750_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|1735223_1736165_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1736173_1737142_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1738681_1739650_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1739827_1740817_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1740863_1741622_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1741811_1742549_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|1742647_1743598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1743782_1744565_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1744558_1745260_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1745499_1746102_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1747428_1748379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930485.1|1748375_1749932_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|1749924_1750698_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|1750756_1751707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1751811_1752759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1752812_1754627_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1754619_1755294_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1755423_1758498_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930491.1|1758511_1758811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1759125_1759749_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1759992_1760862_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1760839_1761784_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1761869_1762796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1762908_1763688_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1763678_1764875_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1764905_1765856_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1766077_1766767_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1766831_1767587_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1767638_1768631_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1768640_1769594_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1769709_1770672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1772073_1772502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1772498_1773449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1773742_1774465_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1774903_1776091_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1776094_1776445_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1778194_1779166_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1779179_1779893_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1779897_1780815_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1780921_1781218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1781316_1782267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	1789563	1908912	4102567	tRNA,protease,transposase	Moraxella_phage(10.71%)	106	NA	NA
WP_005013747.1|1789563_1790514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1790557_1791100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1791197_1792046_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1792095_1792545_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1792541_1793543_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1793555_1794350_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1794398_1796300_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1796296_1796920_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1797046_1798171_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1798551_1800156_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1800311_1801088_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1801172_1802171_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1802167_1802941_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930522.1|1803925_1804876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804913_1805501_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805518_1805902_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807261_1808554_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808688_1809729_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930525.1|1809826_1810843_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1811110_1811746_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811883_1812642_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812626_1813406_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813423_1814308_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1814304_1815084_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1815110_1815788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816076_1816829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816947_1818348_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818371_1818770_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818945_1819146_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819284_1820013_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820146_1821562_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821565_1822429_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822441_1823191_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1823433_1825389_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1825370_1826039_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826813_1827764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827912_1828251_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828308_1828470_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828501_1828702_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828967_1831541_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831611_1834161_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836711_1837200_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837291_1838443_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838496_1839318_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839356_1840586_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840714_1841155_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841265_1842216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1842212_1842686_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1842847_1843786_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1843787_1844996_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1845100_1845607_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1845609_1848471_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848460_1849426_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1849485_1851480_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1851578_1852529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|1852627_1853578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1853574_1853949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1854210_1855419_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1855415_1857716_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1857768_1860381_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033446179.1|1860740_1862648_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010930547.1|1862662_1863559_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1863565_1864705_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1864704_1865526_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1867096_1867426_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1867808_1869065_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1869139_1869421_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1869462_1869783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1870089_1870293_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_010930552.1|1870376_1870943_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1871288_1871489_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|1871600_1872179_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1872357_1873668_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1873670_1874324_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1874428_1875733_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1875921_1878375_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1878498_1879449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1879676_1880900_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1880965_1881937_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1882003_1882405_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|1882424_1883222_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1883218_1883650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1883646_1884804_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1884825_1885602_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1887814_1888483_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1888475_1889117_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019248063.1|1889151_1889883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1889900_1890113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1890683_1891634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1893191_1893842_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010930567.1|1893970_1895173_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1895250_1897287_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1897539_1898031_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1898246_1898759_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1898776_1899988_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1900025_1900436_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1900437_1900761_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1900763_1901276_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1901405_1903268_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1903277_1903619_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1903618_1903813_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1903937_1904831_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1904827_1905778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905902_1906712_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1906912_1907863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929686.1|1907961_1908912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2219316	2270953	4102567	transposase	Erysipelothrix_phage(33.33%)	45	NA	NA
WP_010930730.1|2219316_2220267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2221137_2222010_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2222087_2223227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2223585_2224842_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2224847_2225375_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2225379_2226198_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2226197_2226920_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2226941_2227256_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2227273_2228422_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2228452_2229328_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2229324_2230644_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930738.1|2230716_2231913_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2231923_2233411_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2236005_2236905_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2237042_2238008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2238106_2239057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2239278_2240229_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2240225_2240528_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2240687_2241092_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2241084_2242311_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2242307_2242754_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2242823_2243606_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2243647_2245153_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2245438_2246272_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2247709_2248531_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2248549_2249404_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2249407_2250379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2251063_2251240_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812172.1|2252764_2253061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930747.1|2253235_2254588_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_010930153.1|2254730_2255747_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2257726_2258740_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2258826_2259732_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2259888_2260233_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2260390_2260849_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2260862_2263079_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2263075_2264137_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2264165_2265140_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2265091_2265910_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2265922_2266531_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2266705_2267101_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2267119_2268559_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2268587_2268935_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2268953_2269904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2270002_2270953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2299115	2349869	4102567	tRNA,protease,transposase	Staphylococcus_phage(11.11%)	46	NA	NA
WP_005012067.1|2299115_2300066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2300232_2301207_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2301203_2301347_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2302968_2303631_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2303633_2303810_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2303806_2304745_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2304836_2306327_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2306412_2306565_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2306578_2306818_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2306913_2307657_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2307665_2308190_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2308288_2309212_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2309208_2309970_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2309985_2311071_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2311270_2312221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2312180_2312594_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2312878_2313178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2313587_2315870_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2316335_2316530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2316555_2318586_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2318605_2318818_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2319095_2319635_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2319748_2321044_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2321120_2322278_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2322461_2323361_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2323379_2324684_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2324649_2325756_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2325843_2326080_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2326218_2327289_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2327292_2328648_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2328674_2329832_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2329837_2330476_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2330477_2331773_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2331822_2333109_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2333124_2333631_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2333627_2334776_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2334803_2335229_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2335551_2338434_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2338526_2339282_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2340047_2341397_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2341495_2342446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2345186_2346476_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2346594_2347032_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2347075_2348284_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2348430_2348895_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930800.1|2348918_2349869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2731052	2771721	4102567	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2731052_2732003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2732113_2732296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2732395_2732992_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2733175_2734267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2734766_2735177_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2735235_2735565_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2735582_2738000_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2738012_2739035_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2739109_2739469_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2739484_2739682_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2740017_2740968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2741162_2741612_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2741608_2742559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2742669_2744118_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2744232_2744478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2744617_2745568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2745812_2746526_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2746648_2746876_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2747170_2747809_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2747917_2748952_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2748948_2749899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2750314_2750839_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2750842_2751112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2751310_2752372_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2752455_2754090_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2754091_2754895_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2754923_2755883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2755886_2757401_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2757437_2758442_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2758873_2759344_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2759379_2759991_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2760021_2760645_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2760725_2762258_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2762292_2763510_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2763577_2764609_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2764605_2765775_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2765768_2766449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2766610_2767453_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2767615_2768587_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2768758_2769637_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2769659_2770730_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2770770_2771721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2796819	2857967	4102567	tRNA,transposase	Bacillus_virus(20.0%)	46	NA	NA
WP_005013747.1|2796819_2797770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2798185_2800822_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2800818_2801943_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2801939_2803322_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2803457_2803925_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931045.1|2804786_2805989_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2805990_2807721_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2807838_2808147_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2808159_2808972_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2809852_2812018_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2812143_2812932_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2812971_2814576_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2814656_2815397_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2815404_2815899_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2816271_2817291_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2817287_2818670_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2818702_2819563_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2820566_2821448_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2821506_2821944_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2822034_2823006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2823044_2823989_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2824084_2824894_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2824970_2825345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2825451_2826144_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2826136_2826553_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2826663_2827296_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2827324_2827768_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2827789_2828881_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2828935_2829736_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2829871_2830492_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2830631_2831105_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2832244_2833195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2833191_2840853_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2841093_2845140_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2845452_2846034_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2846030_2847329_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2847408_2848437_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2848697_2849648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2849746_2850697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2850693_2851644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2851960_2852566_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2852619_2853933_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2854007_2854478_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2854477_2855266_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2855276_2856929_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2857016_2857967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2881892	2938865	4102567	protease,transposase	Pelagibacter_phage(20.0%)	44	NA	NA
WP_005012067.1|2881892_2882843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2882977_2884084_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2884094_2885192_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2885336_2886542_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2886548_2887070_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2887066_2887549_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2887554_2887806_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2887786_2888272_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2888407_2891869_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2891886_2892771_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2892780_2893212_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2893458_2893962_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2894039_2895440_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2895514_2896390_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2896386_2897394_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2897861_2898167_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2898257_2898848_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2899038_2900055_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2900246_2902583_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2902665_2903100_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2903198_2904149_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2904145_2904940_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2904971_2905676_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2905750_2906551_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2906547_2906955_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2906951_2907593_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2907585_2909586_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2910846_2912178_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2912174_2913125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2914831_2915098_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2915805_2916144_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2920697_2921300_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2921396_2922686_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2922743_2923475_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2923471_2924275_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2924271_2925360_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2925356_2926286_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2926434_2927580_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2927601_2928552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2928882_2932704_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2932860_2933529_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931112.1|2933533_2935207_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2935225_2936545_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2936549_2938865_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
>prophage 20
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	2946364	3073574	4102567	protease,transposase	uncultured_Mediterranean_phage(12.5%)	118	NA	NA
WP_003820400.1|2946364_2946679_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2946906_2947152_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2947246_2947765_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2947864_2949070_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2949185_2950583_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2950699_2951278_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2951350_2952742_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931121.1|2952909_2953860_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2954140_2954761_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2954757_2955171_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2955167_2956211_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2956266_2956455_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2956464_2957229_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2957319_2957976_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2958067_2958826_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2958851_2960453_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2960653_2961658_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2961758_2962022_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2962139_2962916_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2963506_2964457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2966840_2967953_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2968009_2968960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2969168_2969390_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2969603_2971010_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2971006_2972311_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2972307_2973495_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2973711_2974164_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2974166_2974631_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813082.1|2974710_2976390_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
WP_003813085.1|2976494_2977472_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2977551_2978520_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2978540_2979914_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2979910_2980747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2980863_2981319_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2981334_2981607_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2981699_2982023_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2982070_2982451_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2982670_2983468_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2983624_2985487_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2985536_2986448_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2986452_2986719_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2986805_2987636_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2987810_2988776_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2988946_2989957_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2990104_2991256_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2992398_2993871_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2993881_2994292_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2994355_2995402_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2995508_2996387_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2996400_2997597_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2997658_2999350_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2999346_3000297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3000417_3001314_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3003591_3005817_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3005981_3007070_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3007026_3007680_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3007727_3008525_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3009056_3010007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166214.1|3010087_3011236_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|3011292_3012243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3012341_3012647_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3012675_3013110_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3013111_3014356_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3014352_3015063_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3015077_3015989_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3016351_3016756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3016752_3017211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3017217_3018126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3018122_3018989_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3018975_3019803_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3019813_3020941_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3022018_3023257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3023298_3024561_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3024567_3025320_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3025371_3025557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3025832_3026297_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3026328_3026988_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3027132_3029241_+	AsmA family protein	NA	NA	NA	NA	NA
WP_010931155.1|3029242_3029863_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3029966_3030707_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3031841_3032966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3033011_3033380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3033621_3034572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3035607_3036150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3036535_3037486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3037482_3038391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3038517_3039354_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3039866_3040976_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3041037_3041988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3042180_3042963_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3042976_3043741_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3043753_3045100_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3045125_3046055_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3046170_3047076_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3047093_3048293_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3048365_3049058_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3049106_3051533_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931070.1|3051577_3052528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3052744_3053113_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3053398_3054325_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3054368_3055379_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3055375_3055810_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3056935_3057724_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3057733_3058516_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3058519_3059611_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3059716_3061192_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3061333_3061882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3061897_3062359_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3062459_3063449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3063747_3064449_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3064487_3065861_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3065899_3067186_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3068072_3068975_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3068922_3070143_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3070139_3070649_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3070638_3071334_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3071404_3072274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3072623_3073574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	3146896	3210731	4102567	tRNA,protease,transposase	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3146896_3147847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3147992_3149117_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3149322_3149886_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3150880_3151363_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3151520_3152768_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3152988_3153645_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3153680_3154910_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3155177_3156128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3156219_3157635_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3157640_3158777_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3158846_3159218_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3159305_3160052_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3160088_3161153_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3161341_3161734_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3161743_3162172_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3162467_3163565_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3163906_3165271_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3165329_3165881_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3165894_3166569_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3167825_3168635_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3168637_3169474_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3169488_3170181_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3170192_3170582_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3170687_3172076_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3172192_3173689_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3173985_3174660_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3174758_3175709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3175705_3178165_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3178300_3179707_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3179710_3180898_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3180966_3181476_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3181677_3182130_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3182691_3185754_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3186059_3188987_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3189008_3190205_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3190522_3191050_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3191203_3191764_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3191771_3193226_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3193245_3194373_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3194502_3195678_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3195655_3195895_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3196175_3196679_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3196851_3197793_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3197804_3198902_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3199867_3201214_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3201223_3201673_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3201762_3202197_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3202275_3202824_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3202906_3204277_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3204287_3204881_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931245.1|3204952_3206836_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3206873_3207773_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3207769_3208633_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3208731_3209682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3209780_3210731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	3391788	3512064	4102567	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
WP_010929956.1|3391788_3392739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3393143_3393788_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3393812_3394397_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3394497_3395115_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3395117_3396833_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3396829_3397138_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3397154_3397772_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3397816_3398119_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3398219_3399074_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3399261_3399486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3399655_3399928_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3400345_3400753_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3401122_3401917_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3402017_3403253_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3403321_3404338_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3404349_3405726_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3405722_3406919_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3406915_3408454_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3408450_3409710_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3411650_3412601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069004.1|3412699_3413650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3414416_3415511_-	CoA transferase	NA	NA	NA	NA	NA
WP_010931345.1|3415503_3416838_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3416791_3417475_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3417500_3418664_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3418660_3419662_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3419661_3420534_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3420530_3421280_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3421276_3422068_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3422064_3423204_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3423479_3424265_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3424298_3425081_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3425084_3425474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3426613_3427477_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3427512_3428601_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3428597_3429548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3429901_3432880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3433806_3434685_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3436633_3437584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3437580_3438048_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3438090_3438861_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3438881_3439682_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3439692_3441102_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3441196_3441982_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3442221_3443238_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3443345_3443738_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3443875_3444556_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3444560_3445532_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931359.1|3445627_3446578_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3448082_3448784_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3448783_3450208_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3450224_3451280_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3451276_3452617_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3452732_3454496_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3454607_3455486_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3455598_3456414_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3456417_3456669_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3456753_3457770_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3458100_3458322_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3460682_3461600_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3462097_3463306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3463385_3464957_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3465074_3466010_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3466198_3467143_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3467710_3473428_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3473433_3474561_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3474616_3475243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|3475514_3476531_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3476661_3477372_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3477368_3478358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3478453_3480085_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3480087_3480825_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3480980_3481853_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3482202_3483342_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3483338_3483998_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3484069_3484702_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3484731_3485250_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3485260_3486370_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3486416_3487271_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3487272_3488175_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3489397_3490348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3492101_3493091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3493266_3494055_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3494051_3495083_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3495101_3495665_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3495720_3497241_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3497504_3498209_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3498216_3498945_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3499059_3499434_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3499476_3500766_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3500762_3501932_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3501928_3502768_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3502827_3503763_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3503775_3504726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3504824_3505787_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3505818_3506178_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3506302_3507205_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3507206_3508979_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3509013_3509790_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3511113_3512064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	3527002	3585738	4102567	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_005012808.1|3527002_3527953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3528081_3529215_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3529258_3530164_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3530166_3531867_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3531863_3532784_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3532791_3533769_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3533827_3534862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3536836_3537073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3537199_3538063_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3538151_3538973_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3539052_3539790_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3539786_3540779_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3540931_3541555_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3541599_3542748_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3545071_3546022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931401.1|3546362_3547313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3547411_3548362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3548658_3549156_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3549198_3550974_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3550981_3551848_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3551854_3552589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3553758_3554553_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3554842_3555433_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3555466_3556795_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3556869_3558015_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3558126_3559077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3559808_3560186_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3560170_3560872_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3561015_3561708_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3561707_3562811_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3562920_3565293_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3565289_3566849_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3566873_3567671_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3567702_3568848_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3568952_3570395_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3570397_3571627_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3573764_3574715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3575844_3576402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3576377_3576728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3576896_3577691_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3577687_3578737_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3578736_3579426_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3579512_3580010_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3580041_3581358_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3581374_3582349_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3582385_3582844_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3582843_3583524_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3583526_3583955_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3584007_3585738_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 25
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	3591904	3639007	4102567	tail,terminase,tRNA,protease,transposase	uncultured_Caudovirales_phage(21.05%)	50	NA	NA
WP_010931429.1|3591904_3595861_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3595853_3596243_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3596239_3596773_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3596840_3597200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3597209_3599822_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3599847_3600138_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3600155_3600485_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3600494_3601013_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3601267_3601768_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3601775_3602198_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3602194_3602593_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3602589_3602985_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3602984_3603173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3603186_3603669_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3603731_3603983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3604657_3605608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3607085_3607688_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3607810_3608053_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3608058_3609114_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3609142_3610561_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3610563_3611841_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3611827_3612313_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3612952_3613903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3614159_3614849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3614841_3615093_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3615647_3616259_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3616330_3616537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3616788_3617739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|3617837_3618638_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3618699_3619083_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|3619094_3620447_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|3620734_3621064_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|3621066_3621816_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3621998_3622919_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3622965_3623178_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3623200_3623623_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|3623639_3624740_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3624836_3626354_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3626429_3627269_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|3627290_3628163_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3628253_3629348_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3629641_3630592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3630666_3631608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3631706_3632657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|3632740_3633100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|3633481_3634519_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|3634835_3636176_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|3636185_3636638_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|3636734_3637916_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|3637981_3639007_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
>prophage 26
NZ_CP012089	Bordetella pertussis strain J169 chromosome, complete genome	4102567	3705754	3746661	4102567	transposase	uncultured_virus(25.0%)	40	NA	NA
WP_005013747.1|3705754_3706705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931499.1|3707097_3708105_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003808594.1|3708253_3709081_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931500.1|3709086_3709884_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_010931501.1|3710029_3711205_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	M4QPK3	Synechococcus_phage	40.3	4.5e-34
WP_010931502.1|3711218_3711740_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2I2L4Y7	Orpheovirus	34.5	1.8e-11
WP_003808599.1|3711747_3712212_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_023853077.1|3712269_3713268_+	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_010931504.1|3713300_3713807_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_003808604.1|3713803_3714370_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	40.5	3.4e-19
WP_003808606.1|3714507_3715329_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_010931505.1|3715336_3716656_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003808610.1|3716706_3717105_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003808614.1|3717193_3718084_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_010931506.1|3718385_3721418_+	serum resistance autotransporter BrkA	NA	NA	NA	NA	NA
WP_010931507.1|3721521_3723165_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	59.7	3.9e-169
WP_003808621.1|3723197_3723485_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	52.1	1.2e-20
WP_010926000.1|3723818_3724448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808629.1|3724444_3725146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931508.1|3725194_3725830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931509.1|3725873_3727583_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	27.4	2.7e-27
WP_010931510.1|3727644_3728595_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931511.1|3729200_3730214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931512.1|3730261_3732007_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	25.1	6.5e-21
WP_005013747.1|3732237_3733188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813004.1|3733269_3733917_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010931513.1|3733931_3735359_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
WP_003813001.1|3735524_3736130_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_050849411.1|3736135_3736336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3736417_3737368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302794.1|3737382_3737538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812997.1|3737559_3737826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812995.1|3738155_3738392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812993.1|3738408_3738666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931515.1|3740279_3741254_-	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_010931516.1|3741585_3742185_+	membrane protein	NA	NA	NA	NA	NA
WP_010928587.1|3742172_3743603_+	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_005012808.1|3743612_3744563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3744661_3745612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3745710_3746661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
