The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	27282	70036	4105353	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	77634	136108	4105353	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930048.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	164892	225403	4105353	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	233335	286923	4105353	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	390856	448365	4105353	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	591468	652658	4105353	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592915_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594801_595293_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595311_596385_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596431_597535_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597610_598231_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598251_598761_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598815_599067_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599130_600264_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600271_600658_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600654_603174_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603602_603941_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603937_604444_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604505_605306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605416_606358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606451_607987_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609666_611517_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611520_612354_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612353_613295_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613546_614518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614659_616948_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617254_618163_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618217_619183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619257_620919_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620990_621701_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621667_621832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621849_622800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623498_623882_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623939_624542_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625094_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628135_629185_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629332_629911_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637838_638789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638887_639688_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639749_640133_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640144_641578_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642116_642866_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644250_644673_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644689_645790_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645886_647404_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649303_650398_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650691_651642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	657982	704173	4105353	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657982_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659048_659288_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663151_664120_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667217_668168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670885_671641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674954_676697_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679387_680338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680589_680796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680867_681479_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682033_682285_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682277_682967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683223_684174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684813_685299_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685285_686563_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690469_691420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693879_694302_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695064_695583_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695592_695922_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695939_696230_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699304_699838_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699834_700224_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	710339	764269	4105353	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710339_712070_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712122_712551_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712553_713234_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713233_713692_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713728_714703_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714719_716036_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721362_722313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724450_725680_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725682_727125_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727229_728375_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728406_729204_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729228_730788_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730784_733157_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733266_734370_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734369_735062_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735205_735907_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735891_736269_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737000_737951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738110_738983_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739323_739542_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739581_740961_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741002_742400_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742439_744092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744095_744980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744979_745921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745999_747619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747785_748601_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748668_749238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749238_750189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751974_753240_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753397_754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762788_763217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	855147	904411	4105353	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855147_856098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856115_856670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856671_857106_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857102_857537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857520_858324_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858340_859156_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859152_859968_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860114_860816_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860843_862802_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862884_863835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864055_864724_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864847_865954_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865966_869080_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869076_870570_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870584_871256_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871299_871794_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871934_872582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872685_874734_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874730_876743_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876768_878103_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878211_879204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879270_881355_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881379_882351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882479_883511_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883514_884666_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884836_885760_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885837_886662_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886858_887875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888071_889055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890653_892042_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892072_893062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893172_894405_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894686_895487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895509_897741_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898528_898975_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898996_899743_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899886_900864_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901497_902109_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902102_903320_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903460_904411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	914023	978963	4105353	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914023_914974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914970_916803_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917201_917861_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917954_918101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918209_918377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918388_919069_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919350_920067_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920081_921383_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923527_926416_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926639_927992_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928020_928542_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928538_929993_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930027_930276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930381_931257_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931282_932338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932350_933142_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933174_934545_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935721_936672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936724_936946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937105_937318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937437_938556_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939061_939313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939425_940376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940372_940756_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940810_942625_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942774_943602_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943647_944628_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944624_944837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944833_946015_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946178_946913_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946914_949527_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949662_951576_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952191_952602_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952699_953785_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953883_954834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954830_955805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955929_956841_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957117_957510_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957639_958590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958619_958802_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959574_960756_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960971_961649_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961645_962371_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962496_963078_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963448_966130_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966129_967263_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967255_968341_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968427_969327_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969323_970652_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970666_971338_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971525_973241_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973242_973602_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973793_974108_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974150_975371_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975367_976309_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976305_977295_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977329_977914_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978012_978963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	998368	1061519	4105353	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998368_999319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999423_1000473_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000610_1001627_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003135_1003708_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003767_1004499_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004550_1005468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006275_1009455_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077069127.1|1009451_1010834_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010903_1011155_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011300_1011915_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012101_1014216_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014291_1015143_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015139_1015766_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015762_1017517_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017809_1020515_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020527_1022189_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022201_1023992_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024213_1025389_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025431_1026382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026480_1027221_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027415_1029452_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029469_1030480_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030597_1031791_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031820_1032594_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032590_1033781_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033806_1034745_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034741_1037090_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037244_1037886_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037989_1039123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039215_1039368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039399_1039948_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039966_1040452_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040629_1041568_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041570_1041888_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041933_1042878_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044558_1045209_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045262_1045598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045594_1046455_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046471_1046753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046826_1047090_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047333_1048284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048582_1049320_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049755_1050079_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050113_1050674_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050794_1051670_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051682_1052630_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052731_1053025_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053051_1055109_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055123_1055624_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055697_1057404_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058267_1059320_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059372_1059762_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059770_1060403_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060502_1061519_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1067503	1126517	4105353	protease,transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_015041211.1|1067503_1068931_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069868_1070885_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071217_1072153_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072202_1074083_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074149_1074494_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074638_1075775_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075771_1076845_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077002_1078439_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078529_1079171_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079506_1080523_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083669_1085091_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085354_1086071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086155_1086473_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086513_1086927_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086928_1087288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087330_1088875_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088958_1089789_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089823_1090978_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091020_1091893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092009_1094298_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095504_1095969_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095995_1096946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096963_1097101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097313_1098090_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098134_1098992_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099013_1100030_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100164_1101205_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101399_1103481_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103716_1105210_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105440_1106235_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106455_1107814_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107810_1108653_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108671_1110558_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110499_1110751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110795_1111428_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111446_1112049_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112200_1113151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113731_1114439_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114797_1115784_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115923_1116937_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116933_1117884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117901_1118042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117996_1118455_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118491_1119805_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119822_1120194_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120190_1121654_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121794_1122523_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122504_1125354_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125566_1126517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1317954	1386441	4105353	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317954_1318905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319673_1320312_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321201_1321648_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321729_1322431_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322431_1323199_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323195_1324434_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324433_1325360_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325462_1326578_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326593_1327544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327897_1328479_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328475_1329309_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329519_1330833_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331009_1331891_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331910_1332762_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332814_1333903_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334013_1335141_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335375_1335987_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1336085_1337036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337257_1337635_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337782_1338280_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338276_1338804_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338937_1339753_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339765_1340947_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340994_1341888_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342014_1342485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342610_1343438_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343466_1344243_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344239_1344515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344529_1344994_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345005_1345707_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345816_1346317_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346399_1347578_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349205_1349541_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349728_1351177_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351234_1351579_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351685_1352225_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352317_1353268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353285_1353525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354006_1354438_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354619_1355024_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356260_1356584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356586_1357474_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357506_1357932_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358003_1358357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358596_1359103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359141_1360473_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360532_1361348_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361344_1362199_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365261_1367805_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369171_1370926_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370922_1373043_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373047_1375243_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375239_1378581_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381383_1382334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382399_1382579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382695_1383451_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383437_1384583_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385490_1386441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1446932	1502419	4105353	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446932_1447883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449084_1449531_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449523_1450999_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450995_1451751_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451743_1452754_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452743_1454420_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454732_1455065_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455078_1455474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455483_1455810_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455806_1456133_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1456059_1456473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457077_1457428_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457475_1457904_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457911_1459285_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459425_1459803_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460065_1461373_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461433_1462264_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462260_1462749_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462790_1464311_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464354_1464831_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465634_1468232_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468261_1469083_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469809_1470559_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470742_1471621_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471718_1472435_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472449_1473010_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473176_1473941_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473960_1474818_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474814_1476014_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476053_1477388_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477440_1479777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479902_1480466_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480474_1481566_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481637_1482093_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482093_1482888_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482884_1484066_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484052_1484658_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484654_1485428_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485439_1486267_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486428_1488792_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488859_1489579_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489702_1490128_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490162_1491113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491230_1492157_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492222_1493380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493360_1493828_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493975_1494926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494942_1495377_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495366_1495717_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495913_1497068_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497064_1498237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498284_1499178_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499223_1499661_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499720_1500410_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500419_1501370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501468_1502419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1597116	1665204	4105353	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1597116_1597605_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597722_1598301_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598406_1598775_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598873_1599824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599830_1600943_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601629_1602832_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1602867_1603014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1603035_1605696_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1605708_1609113_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609780_1612006_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612052_1612379_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612429_1613038_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613136_1614087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614156_1614921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1614917_1615517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615620_1616472_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616531_1617158_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617154_1618105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618203_1619316_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619305_1620307_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620412_1621924_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621920_1623225_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623336_1623897_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624164_1624719_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625174_1625390_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625644_1628242_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628238_1629426_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1630086_1630701_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1630789_1631917_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631928_1632834_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633726_1634677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634858_1635611_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635679_1636339_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636335_1637064_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637076_1639356_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639380_1639584_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639625_1640258_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640393_1641311_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641307_1642021_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642258_1643029_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643033_1643633_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643877_1645368_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645426_1645711_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1645848_1646004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1646276_1647203_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647339_1648080_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648246_1649623_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649804_1650710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652361_1654164_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1654290_1654932_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655030_1655981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1656002_1657223_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657408_1658821_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658884_1659952_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659951_1661439_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661448_1662393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662552_1663251_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663328_1664234_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664253_1665204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1701153	1756744	4105353	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701153_1702104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702162_1702936_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702928_1704485_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704481_1705432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706758_1707361_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707600_1708302_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708295_1709078_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709262_1710213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710311_1711049_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711238_1711997_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712043_1713033_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713210_1714179_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715718_1716687_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716695_1717637_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718110_1719121_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719111_1720626_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720622_1721969_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1721971_1723006_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723055_1724681_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725233_1726184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726288_1727236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727289_1729104_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729096_1729771_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729900_1732975_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732988_1733288_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733602_1734226_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734469_1735339_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735316_1736261_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736346_1737273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737385_1738165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738155_1739352_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739382_1740333_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740554_1741244_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741308_1742064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742115_1743108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743117_1744071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744186_1745149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746550_1746979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746975_1747926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748219_1748957_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749380_1750568_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750571_1750952_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752671_1753643_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753656_1754370_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754374_1755292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755398_1755695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755793_1756744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	1989508	2059160	4105353	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1989508_1992166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992243_1993446_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993442_1993955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994077_1994515_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994791_1995742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995840_1996791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1997044_1998850_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1998963_1999131_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999194_1999431_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1999799_2000999_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002514_2003465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003916_2004918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005090_2005948_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005944_2007207_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007307_2007682_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2007754_2008942_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009026_2009797_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009910_2010675_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010625_2011927_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2011923_2012730_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2014474_2015446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015602_2016115_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016273_2017248_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018248_2019043_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019068_2019875_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019985_2020576_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020586_2021765_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021867_2022242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022494_2023826_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023892_2027123_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028613_2029360_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029444_2029906_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029943_2031002_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030964_2032794_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032833_2033406_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034830_2035652_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035970_2037293_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2037652_2038288_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2038247_2039198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2040068_2040941_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2041018_2042158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2042516_2043773_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043778_2044306_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2044310_2045129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2045128_2045851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045872_2046187_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2046204_2047353_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2047383_2048259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2048255_2049575_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2049647_2050844_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050854_2052342_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2054936_2055836_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055973_2056939_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2057037_2057988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2058209_2059160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2070656	2120052	4105353	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2070656_2071607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2072744_2073041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2073215_2074568_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2074710_2075727_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2077706_2078720_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2078806_2079712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079868_2080213_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2080370_2080829_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080842_2083059_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2083055_2084117_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2084145_2085120_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2085071_2085890_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085902_2086511_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2086685_2087081_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2087099_2088539_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2088567_2088915_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088933_2089884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2090536_2091487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2091570_2093388_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2093461_2094109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2094121_2095051_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2095220_2095685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095932_2096613_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2096661_2098353_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2098368_2098920_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098916_2099288_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2099400_2100237_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2100247_2100772_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100869_2101049_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2101178_2102153_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2102283_2102640_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2102629_2103505_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2103603_2104488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2104509_2105805_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2106753_2107404_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2107491_2109012_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2109269_2111135_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2112180_2113131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2113148_2113289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2114103_2114463_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2114450_2115887_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115883_2116537_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2116533_2117727_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117830_2119105_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2119101_2120052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2131256	2199632	4105353	protease,transposase,tRNA	Klosneuvirus(22.22%)	58	NA	NA
WP_005013747.1|2131256_2132207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2132166_2132580_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2132864_2133164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2133573_2135856_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2136541_2138572_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2138591_2138804_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2139081_2139621_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2139734_2141030_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2141106_2142264_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2142447_2143347_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2143365_2144670_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2144635_2145742_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2145829_2146066_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2146204_2147275_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2147278_2148634_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2148660_2149821_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2149823_2150462_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2150463_2151750_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2151808_2153104_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2153110_2153617_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2153613_2154762_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2154789_2155215_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2155537_2158420_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2158512_2159268_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2160033_2161383_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2161481_2162432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2162530_2163481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2163554_2164028_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2164053_2165262_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2165258_2166032_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2166031_2166655_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2166820_2167081_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2167384_2167966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2168032_2168287_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2168273_2170898_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2170969_2171788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2171784_2172390_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2172427_2173561_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2175276_2175651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2175748_2177023_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2177026_2178604_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2179510_2180866_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2180862_2182497_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2182489_2183320_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2183337_2184282_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2184334_2185909_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2185956_2186316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2186308_2186629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2186744_2187677_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2187779_2188736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2188885_2190223_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2190227_2191484_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2191679_2192726_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2192783_2193152_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2193282_2194155_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2194231_2195134_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2196190_2197408_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2198681_2199632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2214910	2279731	4105353	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2214910_2215861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2216431_2216644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2216661_2217393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2217427_2218069_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2218061_2218730_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2220942_2221719_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2221740_2222898_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2222894_2223326_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2223322_2224126_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2224139_2224541_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2224607_2225579_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2225644_2226868_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2227095_2228046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2228169_2230623_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2230811_2232116_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2232220_2232874_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2232876_2234187_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2234383_2234944_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2235055_2235256_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2235601_2236168_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2236251_2236455_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2236761_2237082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2237123_2237405_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2237479_2238736_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2239118_2239448_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2241018_2241840_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2241839_2242979_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2242985_2243882_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2243878_2245804_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2246163_2248776_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2248828_2251129_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2251125_2252334_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2252595_2252970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2252966_2253917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2254015_2256010_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2256069_2257035_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2257024_2259886_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2259888_2260395_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2260499_2261708_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2261709_2262648_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2262809_2263283_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2263279_2264230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2264340_2264781_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2264909_2266139_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2266177_2266999_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2267052_2268204_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2268295_2268784_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2271334_2273884_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2273954_2276528_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2276793_2276994_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2277025_2277187_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2277244_2277583_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2277731_2278682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2278780_2279731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2350407	2413985	4105353	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2350407_2351358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2351659_2352136_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2352759_2354397_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2354427_2355741_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2355874_2356192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2356292_2357615_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2357611_2358562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2358660_2359611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2360140_2361163_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2361191_2362022_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2362038_2363736_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2363800_2364877_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2365036_2365900_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2365930_2366500_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2366516_2367368_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2368425_2369307_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2369381_2370371_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2370433_2371384_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2371446_2372304_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2372363_2372852_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2374424_2375615_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2375611_2377198_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2377216_2378284_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2378388_2379933_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2380352_2381927_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2382034_2383051_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2383047_2383887_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2383891_2385529_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2385525_2386476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2386493_2386637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2386618_2387893_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2387922_2388213_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2388285_2389299_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2389318_2390581_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2390583_2391507_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2391503_2392997_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2393007_2393940_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2394121_2395447_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2395481_2396825_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2396897_2398418_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2398572_2399304_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2399371_2400712_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2400727_2401639_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2401629_2402223_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2402284_2402671_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2402682_2403153_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2403164_2403788_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2403808_2406556_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2413034_2413985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2665403	2705867	4105353	transposase,tRNA	Salmonella_phage(28.57%)	43	NA	NA
WP_005012067.1|2665403_2666354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812762.1|2666636_2667326_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930991.1|2667441_2668800_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.5	1.2e-22
WP_003820458.1|2668994_2670671_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_015041674.1|2670922_2671699_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930993.1|2671726_2672791_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	5.7e-28
WP_010930994.1|2672787_2674539_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_004567469.1|2674567_2675605_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930995.1|2675642_2676389_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820449.1|2676389_2676833_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930996.1|2676833_2677226_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930997.1|2677233_2678397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930998.1|2678612_2679500_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994674.1|2679516_2680824_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931000.1|2680875_2681292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812788.1|2681445_2682345_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	33.2	3.7e-44
WP_010926366.1|2682384_2683680_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	35.1	1.4e-41
WP_003820436.1|2683786_2684200_-	membrane protein	NA	NA	NA	NA	NA
WP_010931001.1|2684201_2684636_-	lipoprotein	NA	NA	NA	NA	NA
WP_003812797.1|2684761_2684893_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_023853497.1|2685068_2685809_+	endonuclease	NA	NA	NA	NA	NA
WP_023853503.1|2685950_2686283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2687020_2687971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688081_2688264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688363_2688960_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689143_2690235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690734_2691145_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691203_2691545_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691550_2693968_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693980_2695003_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695077_2695437_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695452_2695650_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695985_2696936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697130_2697580_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697576_2698527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698637_2700086_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700200_2700482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700585_2701536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701780_2702494_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702616_2702844_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703138_2703777_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703885_2704920_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704916_2705867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2726738	2807613	4105353	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_005013747.1|2726738_2727689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853289.1|2727706_2727925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931030.1|2727981_2729340_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2729451_2731179_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2731800_2732751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2733500_2733935_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2733927_2735163_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2735170_2735965_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2735961_2736765_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2736791_2737769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2737797_2739369_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2739379_2740201_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2741925_2743356_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2743368_2744058_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2744153_2745494_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2745495_2745753_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2746106_2747699_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2747795_2749256_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2749478_2750090_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2753836_2754787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2755202_2757839_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2757835_2758960_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2758956_2760339_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2760474_2760942_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2761063_2761732_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2761861_2763007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2763008_2764739_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2764856_2765165_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2765177_2765990_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2766870_2767959_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2769161_2769950_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2769989_2771594_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2771674_2772415_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2772422_2772917_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2773289_2774309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2774305_2775688_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2775720_2776581_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2777584_2778466_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2778524_2778962_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2779052_2780024_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2780062_2781007_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2781102_2781912_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2781988_2782363_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2782469_2783162_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2783154_2783571_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783681_2784314_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784342_2784786_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784807_2785899_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785953_2786754_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786889_2787510_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787649_2788123_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789262_2790213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790209_2797871_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798111_2802158_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802470_2803052_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803048_2804347_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804426_2805455_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805715_2806666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806662_2807613_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2812985	2870143	4105353	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2812985_2813936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815097_2815604_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815600_2816365_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816380_2816665_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816729_2817719_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817890_2818820_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818791_2819478_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819511_2820057_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820101_2821367_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821363_2822266_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823447_2824392_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824486_2826004_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826045_2827674_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827781_2828663_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831775_2832150_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832174_2832513_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832556_2834191_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834229_2835576_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835683_2837105_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837174_2837759_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837861_2838812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838946_2840053_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840063_2841161_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841305_2842511_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842517_2843039_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843035_2843527_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843523_2843775_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843755_2844241_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844376_2847838_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847855_2848740_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848749_2849181_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849427_2849931_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850008_2851409_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851483_2852359_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852355_2853363_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853830_2854136_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854226_2854817_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855007_2856024_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856215_2858552_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858634_2859069_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_076879566.1|2859167_2860118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860216_2861167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861163_2861958_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861989_2862694_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862768_2863569_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863565_2863973_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863969_2864611_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864603_2866604_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867864_2869196_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869192_2870143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2884619	2925978	4105353	protease,transposase	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2884619_2885570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885587_2885746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885900_2889722_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889878_2890547_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890551_2892225_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892243_2893563_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893567_2895883_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895938_2898107_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898103_2903293_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903382_2903697_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903924_2904170_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904264_2904783_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904882_2906088_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906203_2907601_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907717_2908296_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908368_2909760_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909927_2910878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911158_2911779_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911775_2912189_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912185_2913229_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913284_2913473_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913482_2914247_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914337_2914994_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915085_2915844_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915869_2917471_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917671_2918676_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918776_2919040_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919157_2919934_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920524_2921475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923858_2924971_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2925027_2925978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	2956364	3010595	4105353	transposase	Planktothrix_phage(16.67%)	50	NA	NA
WP_005012067.1|2956364_2957315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957332_2957482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957435_2958332_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960609_2962835_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962999_2964088_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964044_2964698_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964745_2965543_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966074_2967025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967099_2968254_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968310_2969261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969359_2969665_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969693_2970128_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970129_2971374_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971370_2972081_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972095_2973007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973369_2973774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973770_2974229_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974235_2975144_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975140_2976007_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975993_2976821_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976831_2977959_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979036_2980275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980316_2981579_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981585_2982338_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982389_2982575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982850_2983315_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983346_2984006_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984150_2986259_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986255_2987206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987309_2987930_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988021_2988774_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989908_2991033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991078_2991447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991688_2992639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993674_2994217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994414_2994585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2994602_2995553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995549_2996515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996584_2997421_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997933_2999043_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999104_3000055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3000247_3001030_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3001043_3001793_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3001820_3003167_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3003192_3004122_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3004237_3005143_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3005160_3006360_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3006432_3007125_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3007173_3009600_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3009644_3010595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	3380001	3433742	4105353	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3380001_3380952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381356_3382001_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382025_3382610_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382710_3383328_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383330_3385046_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385042_3385351_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385367_3385985_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386029_3386332_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386432_3387287_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387474_3387699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387868_3388141_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388558_3388966_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389335_3390130_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390230_3391466_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391534_3392551_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392562_3393939_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393935_3395132_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395128_3396667_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396663_3397923_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399863_3400814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401580_3402675_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402667_3404002_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403955_3404639_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404664_3405828_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405824_3406826_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406825_3407698_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407694_3408444_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408440_3409232_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409228_3410368_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410643_3411429_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411462_3412245_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412248_3412638_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413777_3414641_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414676_3415765_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415761_3416712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417065_3420044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420970_3421849_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423797_3424748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424744_3425212_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425254_3426025_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426045_3426846_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426856_3428266_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428360_3429146_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429385_3430402_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430509_3430902_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431039_3431720_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431724_3432696_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432791_3433742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	3439897	3499197	4105353	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439897_3441661_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441772_3442651_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442763_3443579_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443582_3443834_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443918_3444935_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445265_3445487_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447847_3448765_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449262_3450471_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450550_3452122_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452239_3453175_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453363_3454308_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454875_3460593_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460598_3461726_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461781_3462408_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462679_3463696_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463791_3464502_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464498_3465488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465583_3467215_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467217_3467955_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468110_3468983_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469251_3470472_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470468_3471128_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471199_3471832_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471861_3472380_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472390_3473500_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473546_3474401_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474402_3475305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476527_3477478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479234_3480224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480220_3480379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480399_3481188_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481184_3482216_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482234_3482798_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482853_3484374_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484637_3485342_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485349_3486087_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486192_3486567_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486609_3487899_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487895_3489065_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489061_3489901_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489960_3490896_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490908_3491859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491957_3492920_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492951_3493311_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493435_3494338_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494339_3496112_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496146_3496923_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498246_3499197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012133	Bordetella pertussis strain I259 chromosome, complete genome	4105353	3514135	3572208	4105353	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514135_3515086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515214_3516348_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516391_3517297_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517299_3519000_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518996_3519917_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519924_3520902_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520960_3521995_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523969_3524206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524332_3525196_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525284_3526106_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526185_3526923_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526919_3527912_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528025_3528688_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528732_3529881_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532204_3533155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533495_3534446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534544_3535495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535791_3536289_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536331_3538107_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538114_3538981_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538987_3539722_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540891_3541686_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541975_3542566_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542599_3543928_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544002_3545148_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545259_3546258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546220_3546655_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548171_3549056_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549052_3550258_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550254_3551115_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551227_3553018_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553058_3553724_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553724_3554033_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554198_3555485_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556918_3557869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559820_3561035_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561140_3562130_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562126_3562735_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562747_3563377_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563373_3563994_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564025_3564817_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565668_3566124_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566142_3567069_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567122_3568409_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569339_3570212_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570208_3571159_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571257_3572208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
