assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	1	923262-923346	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GCTGACTTTTCGCCAGCTTCTATGTTGGG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|75aa|up_4|NZ_CP019563.1_919597_919822_-,NA|49aa|up_3|NZ_CP019563.1_919778_919925_-,NA|78aa|up_1|NZ_CP019563.1_922033_922267_+,NA|62aa|up_0|NZ_CP019563.1_922888_923074_+,NA|169aa|down_2|NZ_CP019563.1_925096_925603_-,NA|24aa|down_4|NZ_CP019563.1_926648_926720_+,NA|56aa|down_6|NZ_CP019563.1_927560_927728_-	NA|311aa|up_9|NZ_CP019563.1_914332_915265_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP019563.1_915287_916289_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP019563.1_916726_917452_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP019563.1_917546_918272_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP019563.1_918379_919096_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP019563.1_919597_919822_-	NA	NA|49aa|up_3|NZ_CP019563.1_919778_919925_-	NA	NA|320aa|up_2|NZ_CP019563.1_920597_921557_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP019563.1_922033_922267_+	NA	NA|62aa|up_0|NZ_CP019563.1_922888_923074_+	NA	NA|117aa|down_0|NZ_CP019563.1_923839_924190_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP019563.1_924340_924838_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP019563.1_925096_925603_-	NA	NA|132aa|down_3|NZ_CP019563.1_926272_926668_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_4|NZ_CP019563.1_926648_926720_+	NA	NA|110aa|down_5|NZ_CP019563.1_927037_927367_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP019563.1_927560_927728_-	NA	NA|168aa|down_7|NZ_CP019563.1_927855_928359_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP019563.1_928351_928939_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP019563.1_928950_929751_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	2	1133398-1133476	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	1	1	1133421-1133453	NZ_CP019563.1_1182378-1182346	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP019563.1_1117259_1118162_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP019563.1_1118327_1121981_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP019563.1_1121981_1125458_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP019563.1_1125617_1126193_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP019563.1_1126208_1126733_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP019563.1_1126737_1127313_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP019563.1_1127637_1128969_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP019563.1_1129319_1130525_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP019563.1_1130514_1131894_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP019563.1_1132135_1133065_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP019563.1_1133600_1134845_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP019563.1_1134953_1136144_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP019563.1_1136451_1137579_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP019563.1_1137940_1138318_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP019563.1_1138732_1139326_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP019563.1_1139389_1139773_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP019563.1_1139903_1142309_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP019563.1_1142301_1142730_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP019563.1_1142729_1143071_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP019563.1_1143063_1144560_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	3	1805870-1806060	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCATT	25	3	13	1805895-1805924|1805950-1805980|1805950-1805980|1805950-1805980|1805950-1805980|1806006-1806035|1806006-1806035|1806006-1806035|1806006-1806035|1806006-1806035|1806006-1806035|1806006-1806035|1806006-1806035	NZ_CP019563.1_1806061-1806090|NZ_CP019563.1_426067-426097|NZ_CP019563.1_835353-835383|NZ_CP019563.1_835409-835439|NZ_CP019563.1_919284-919314|NZ_CP019563.1_118484-118455|NZ_CP019563.1_426125-426154|NZ_CP019563.1_440681-440652|NZ_CP019563.1_709538-709567|NZ_CP019563.1_835581-835610|NZ_CP019563.1_1113250-1113221|NZ_CP019563.1_1925065-1925094|NZ_CP019563.1_1925123-1925152	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|45aa|up_1|NZ_CP019563.1_1804719_1804854_-,NA	NA|220aa|up_9|NZ_CP019563.1_1795660_1796320_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|317aa|up_8|NZ_CP019563.1_1796371_1797322_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|331aa|up_7|NZ_CP019563.1_1797647_1798640_-	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_6|NZ_CP019563.1_1798873_1800250_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|333aa|up_5|NZ_CP019563.1_1801149_1802148_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|294aa|up_4|NZ_CP019563.1_1802379_1803261_+	pfam06800, Sugar_transport, Sugar transport protein	NA|135aa|up_3|NZ_CP019563.1_1803275_1803680_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|305aa|up_2|NZ_CP019563.1_1803707_1804622_+	TIGR02152, Putative_ribokinase, ribokinase	NA|45aa|up_1|NZ_CP019563.1_1804719_1804854_-	NA	NA|254aa|up_0|NZ_CP019563.1_1804872_1805634_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|479aa|down_0|NZ_CP019563.1_1806178_1807615_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|264aa|down_1|NZ_CP019563.1_1807630_1808422_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|235aa|down_2|NZ_CP019563.1_1808570_1809275_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|234aa|down_3|NZ_CP019563.1_1809382_1810084_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|down_4|NZ_CP019563.1_1810076_1810520_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|down_5|NZ_CP019563.1_1810632_1811373_-	PRK14084, PRK14084, DNA-binding response regulator	NA|585aa|down_6|NZ_CP019563.1_1811375_1813130_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|down_7|NZ_CP019563.1_1813374_1814049_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|down_8|NZ_CP019563.1_1814192_1815914_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|down_9|NZ_CP019563.1_1815946_1817635_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	4	2123579-2123752	1,3	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	22	2123632-2123648|2123632-2123648|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717|2123702-2123717	NZ_CP019563.1_1241316-1241332|NZ_CP019563.1_1806088-1806072|NZ_CP019563.1_109008-109023|NZ_CP019563.1_109064-109079|NZ_CP019563.1_426080-426065|NZ_CP019563.1_440727-440742|NZ_CP019563.1_705079-705094|NZ_CP019563.1_709492-709477|NZ_CP019563.1_835366-835351|NZ_CP019563.1_835422-835407|NZ_CP019563.1_919297-919282|NZ_CP019563.1_919410-919395|NZ_CP019563.1_1133390-1133375|NZ_CP019563.1_1182353-1182368|NZ_CP019563.1_1721541-1721526|NZ_CP019563.1_1721599-1721584|NZ_CP019563.1_119814-119829|NZ_CP019563.1_663429-663444|NZ_CP019563.1_923266-923251|NZ_CP019563.1_1235895-1235910|NZ_CP019563.1_2288024-2288039|NZ_CP019563.1_2476813-2476798	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP019563.1_2120538_2120718_+,NA	NA|205aa|up_9|NZ_CP019563.1_2114256_2114871_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP019563.1_2114863_2116114_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP019563.1_2116129_2117143_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP019563.1_2117111_2117690_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP019563.1_2117686_2118265_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP019563.1_2118257_2118962_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP019563.1_2118958_2119717_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP019563.1_2119713_2120346_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP019563.1_2120538_2120718_+	NA	NA|681aa|up_0|NZ_CP019563.1_2121438_2123481_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP019563.1_2123927_2124980_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP019563.1_2124966_2125839_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP019563.1_2125835_2126141_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP019563.1_2126104_2127343_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP019563.1_2127506_2128067_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP019563.1_2128915_2129578_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP019563.1_2129594_2130287_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP019563.1_2130283_2131051_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP019563.1_2131285_2131786_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|204aa|down_9|NZ_CP019563.1_2132343_2132955_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	5	2318038-2318170	2	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	ATTGAAGAAGATACAA	16	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|34aa|up_0|NZ_CP019563.1_2315465_2315567_+,NA|68aa|down_6|NZ_CP019563.1_2331482_2331686_+,NA|103aa|down_7|NZ_CP019563.1_2331793_2332102_-,NA|89aa|down_8|NZ_CP019563.1_2332245_2332512_-	NA|204aa|up_9|NZ_CP019563.1_2304054_2304666_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP019563.1_2305212_2306490_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP019563.1_2306966_2308790_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP019563.1_2308928_2309345_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP019563.1_2309575_2310268_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP019563.1_2310432_2311197_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP019563.1_2311350_2312031_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP019563.1_2312054_2313608_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP019563.1_2313724_2315083_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|34aa|up_0|NZ_CP019563.1_2315465_2315567_+	NA	NA|917aa|down_0|NZ_CP019563.1_2319277_2322028_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP019563.1_2322207_2323074_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP019563.1_2323284_2324028_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP019563.1_2324351_2324708_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1628aa|down_4|NZ_CP019563.1_2325012_2329896_+	pfam18483, Bact_lectin, Bacterial lectin	NA|398aa|down_5|NZ_CP019563.1_2330278_2331472_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|68aa|down_6|NZ_CP019563.1_2331482_2331686_+	NA	NA|103aa|down_7|NZ_CP019563.1_2331793_2332102_-	NA	NA|89aa|down_8|NZ_CP019563.1_2332245_2332512_-	NA	NA|603aa|down_9|NZ_CP019563.1_2332795_2334604_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	6	2321624-2321734	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GAAGTACCAAGCGAGCCGGAAACACCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|34aa|up_1|NZ_CP019563.1_2315465_2315567_+,NA|68aa|down_5|NZ_CP019563.1_2331482_2331686_+,NA|103aa|down_6|NZ_CP019563.1_2331793_2332102_-,NA|89aa|down_7|NZ_CP019563.1_2332245_2332512_-	NA|426aa|up_9|NZ_CP019563.1_2305212_2306490_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP019563.1_2306966_2308790_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP019563.1_2308928_2309345_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP019563.1_2309575_2310268_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP019563.1_2310432_2311197_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP019563.1_2311350_2312031_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP019563.1_2312054_2313608_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP019563.1_2313724_2315083_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|34aa|up_1|NZ_CP019563.1_2315465_2315567_+	NA	NA|1016aa|up_0|NZ_CP019563.1_2315550_2318598_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP019563.1_2322207_2323074_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP019563.1_2323284_2324028_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP019563.1_2324351_2324708_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1628aa|down_3|NZ_CP019563.1_2325012_2329896_+	pfam18483, Bact_lectin, Bacterial lectin	NA|398aa|down_4|NZ_CP019563.1_2330278_2331472_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|68aa|down_5|NZ_CP019563.1_2331482_2331686_+	NA	NA|103aa|down_6|NZ_CP019563.1_2331793_2332102_-	NA	NA|89aa|down_7|NZ_CP019563.1_2332245_2332512_-	NA	NA|603aa|down_8|NZ_CP019563.1_2332795_2334604_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP019563.1_2334735_2335128_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	7	2374575-2374659	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTTTGAAATTCTCTGTGTTGGGGCCCC	27	1	10	2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632|2374602-2374632	NZ_CP019563.1_1182325-1182295|NZ_CP019563.1_923464-923494|NZ_CP019563.1_1241303-1241273|NZ_CP019563.1_1925107-1925137|NZ_CP019563.1_2374544-2374574|NZ_CP019563.1_118500-118470|NZ_CP019563.1_440697-440667|NZ_CP019563.1_709522-709552|NZ_CP019563.1_835565-835595|NZ_CP019563.1_993840-993810	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|250aa|up_9|NZ_CP019563.1_2364091_2364841_-,NA|47aa|down_2|NZ_CP019563.1_2377310_2377451_+	NA|250aa|up_9|NZ_CP019563.1_2364091_2364841_-	NA	NA|526aa|up_8|NZ_CP019563.1_2365035_2366613_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|152aa|up_7|NZ_CP019563.1_2366780_2367236_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|up_6|NZ_CP019563.1_2367594_2367852_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|89aa|up_5|NZ_CP019563.1_2367851_2368118_+	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|359aa|up_4|NZ_CP019563.1_2368472_2369549_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|221aa|up_3|NZ_CP019563.1_2369796_2370459_+	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|259aa|up_2|NZ_CP019563.1_2370451_2371228_+	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|396aa|up_1|NZ_CP019563.1_2371623_2372811_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|451aa|up_0|NZ_CP019563.1_2372872_2374225_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|546aa|down_0|NZ_CP019563.1_2374890_2376528_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|200aa|down_1|NZ_CP019563.1_2376707_2377307_+	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]	NA|47aa|down_2|NZ_CP019563.1_2377310_2377451_+	NA	NA|28aa|down_3|NZ_CP019563.1_2377530_2377614_+	pfam14762, HPS3_Mid, Hermansky-Pudlak syndrome 3, middle region	NA|409aa|down_4|NZ_CP019563.1_2377976_2379203_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|212aa|down_5|NZ_CP019563.1_2379199_2379835_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|314aa|down_6|NZ_CP019563.1_2379851_2380793_+	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|232aa|down_7|NZ_CP019563.1_2380792_2381488_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|467aa|down_8|NZ_CP019563.1_2381781_2383182_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|312aa|down_9|NZ_CP019563.1_2383407_2384343_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	8	2668620-2668705	6	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	ACTAATGATACGCAAACATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|62aa|up_4|NZ_CP019563.1_2650979_2651165_+,NA|53aa|down_7|NZ_CP019563.1_2679667_2679826_-,NA|35aa|down_8|NZ_CP019563.1_2680505_2680610_+,NA|364aa|down_9|NZ_CP019563.1_2681042_2682134_-	NA|228aa|up_9|NZ_CP019563.1_2645139_2645823_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_8|NZ_CP019563.1_2645999_2647343_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_7|NZ_CP019563.1_2647441_2647915_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_6|NZ_CP019563.1_2648236_2649679_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_5|NZ_CP019563.1_2649826_2650891_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|62aa|up_4|NZ_CP019563.1_2650979_2651165_+	NA	NA|303aa|up_3|NZ_CP019563.1_2657025_2657934_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP019563.1_2658122_2658932_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP019563.1_2658933_2659866_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP019563.1_2659892_2661248_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP019563.1_2669327_2670434_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP019563.1_2670433_2670868_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP019563.1_2670879_2673012_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP019563.1_2673046_2674585_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP019563.1_2675265_2677071_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP019563.1_2677302_2678085_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP019563.1_2678152_2679010_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP019563.1_2679667_2679826_-	NA	NA|35aa|down_8|NZ_CP019563.1_2680505_2680610_+	NA	NA|364aa|down_9|NZ_CP019563.1_2681042_2682134_-	NA
GCF_001986135.1_ASM198613v1	NZ_CP019563	Staphylococcus aureus strain SR434 chromosome, complete genome	9	2680945-2681026	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_CP019563.1_2679667_2679826_-,NA|35aa|up_0|NZ_CP019563.1_2680505_2680610_+,NA|364aa|down_0|NZ_CP019563.1_2681042_2682134_-,NA|77aa|down_5|NZ_CP019563.1_2685920_2686151_+	NA|2495aa|up_9|NZ_CP019563.1_2661524_2669009_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP019563.1_2669327_2670434_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP019563.1_2670433_2670868_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP019563.1_2670879_2673012_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP019563.1_2673046_2674585_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP019563.1_2675265_2677071_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP019563.1_2677302_2678085_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP019563.1_2678152_2679010_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP019563.1_2679667_2679826_-	NA	NA|35aa|up_0|NZ_CP019563.1_2680505_2680610_+	NA	NA|364aa|down_0|NZ_CP019563.1_2681042_2682134_-	NA	NA|326aa|down_1|NZ_CP019563.1_2682399_2683377_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP019563.1_2683378_2683699_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP019563.1_2683850_2684516_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP019563.1_2684951_2685890_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP019563.1_2685920_2686151_+	NA	NA|458aa|down_6|NZ_CP019563.1_2686822_2688196_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP019563.1_2688652_2689066_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP019563.1_2689265_2689709_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP019563.1_2689829_2690540_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
