The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	27282	70036	4103704	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	77634	136108	4103704	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	164892	225403	4103704	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	233335	286923	4103704	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	555308	614608	4103704	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555308_556259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557582_558359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558393_560166_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560167_561070_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561194_561554_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561585_562548_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929591.1|562646_563597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563609_564545_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564604_565444_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565440_566610_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566606_567896_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567938_568313_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568427_569156_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569163_569868_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570131_571652_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571707_572271_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572289_573321_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573317_574106_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023852630.1|574281_575271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|577027_577978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579200_580103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580104_580959_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581005_582115_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582125_582644_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582673_583306_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583377_584037_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584033_585173_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585522_586395_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586550_587288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587290_588922_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589017_590007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590003_590714_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590809_591826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592097_592724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592779_593907_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593912_599630_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600197_601142_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601330_602266_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602383_603955_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604034_605243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605740_606658_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609018_609240_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609570_610587_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610671_610923_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610926_611742_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611854_612733_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612844_614608_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	620763	674504	4103704	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620763_621714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621809_622781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622785_623466_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623603_623996_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624103_625120_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625359_626145_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626239_627649_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627659_628460_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628480_629251_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629293_629761_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629757_630708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632656_633535_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634461_637440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637793_638744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638740_639829_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639864_640728_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641867_642257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642260_643043_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643076_643862_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644137_645277_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645273_646065_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646061_646811_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646807_647680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647679_648681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648677_649841_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649866_650550_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650503_651838_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651830_652925_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653691_654642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656582_657842_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657838_659377_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659373_660570_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660566_661943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661954_662971_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663039_664275_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664375_665170_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665539_665947_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666364_666637_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666806_667031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667218_668073_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668173_668476_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668520_669138_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669154_669463_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669459_671175_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671177_671795_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671895_672480_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672504_673149_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673553_674504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	723442	763392	4103704	tRNA,protease,transposase,integrase	Pseudomonas_phage(33.33%)	29	720690:720708	740578:740596
720690:720708	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723442_724039_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724035_724818_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724890_725982_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726261_727389_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727730_728777_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729287_732044_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732045_734997_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735012_736224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736220_736421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736407_737358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737374_737869_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737872_738130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738673_739585_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739666_739951_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740734_741685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740578:740596	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742103_744668_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744712_746566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746898_748470_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749911_750862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750947_751688_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751914_752862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754249_755200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755393_756209_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756341_757781_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757794_758136_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758190_759846_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759997_761008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761140_761914_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762441_763392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	773319	820937	4103704	holin,tRNA,transposase,protease	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773319_774270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774408_775161_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775435_777124_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777143_778403_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778417_779512_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779508_781572_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781647_782328_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782605_783979_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783980_785000_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785063_786035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786099_787050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787148_787991_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787990_788326_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788396_789815_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790094_791135_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791214_791466_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791576_792740_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793023_793878_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793874_794765_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794807_795719_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795745_796438_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796452_797433_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797445_799587_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799635_800604_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800594_801263_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801223_802159_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802155_803052_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803048_803771_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803761_803926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804099_804603_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804879_805995_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806137_806602_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806749_807289_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807310_808645_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808658_808964_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809388_809970_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810051_811002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811100_812051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812491_813397_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|813452_815060_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815313_816819_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816833_817298_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817587_818538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818700_819231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819230_819542_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819986_820937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	996797	1099190	4103704	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052697_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058047_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065731_1066472_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087300_1088449_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1129576	1200547	4103704	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152270_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182392_1182731_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183438_1183705_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185411_1186362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186358_1187690_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188950_1190951_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190943_1191585_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191581_1191989_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191985_1192786_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192860_1193565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193596_1194391_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194387_1195338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195436_1196387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196485_1196920_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197002_1199339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199530_1200547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1241618	1302767	4103704	tRNA,transposase	Burkholderia_phage(20.0%)	46	NA	NA
WP_010929591.1|1241618_1242569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1242656_1244309_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1244319_1245108_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1245107_1245578_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1245652_1246966_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1247019_1247625_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286518_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292547_1293750_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930208.1|1294395_1295346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810957.1|1295661_1296129_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296264_1297647_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297643_1298768_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298764_1301401_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301816_1302767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1323852	1370632	4103704	tRNA,transposase	Salmonella_phage(33.33%)	46	NA	NA
WP_005013747.1|1323852_1324803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325424_1327152_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327263_1328622_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328914_1329865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329905_1330976_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1330998_1331877_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332048_1333020_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333182_1334025_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334186_1334867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1334860_1336030_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1336026_1337058_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1337125_1338343_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338377_1339910_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339990_1340614_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340644_1341256_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341291_1341762_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342193_1343198_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343234_1344749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344752_1345712_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345740_1346544_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346545_1348180_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348263_1349325_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349523_1349793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349796_1350321_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1350736_1351687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351683_1352718_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352826_1353465_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353759_1353987_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354109_1354823_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355067_1356018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1356157_1356403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356517_1357966_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012067.1|1358076_1359027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1359125_1360076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1360072_1360522_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1360716_1361667_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1362002_1362200_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1362215_1362575_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1362649_1363672_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1363684_1366102_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1366119_1366449_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1366507_1366918_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1367417_1368509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1368692_1369289_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1369388_1369571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1369681_1370632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1415570	1471976	4103704	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010930208.1|1415570_1416521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1416523_1417477_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1417504_1418356_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1418361_1419390_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1419386_1420430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1420497_1421523_-	dipeptidase	NA	NA	NA	NA	NA
WP_005012067.1|1421760_1422711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930971.1|1422853_1424107_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1424117_1424390_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1424386_1427326_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1427333_1427933_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1427933_1428782_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1428819_1429806_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1429821_1431258_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1431270_1432062_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1432380_1433436_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1433472_1434282_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1434282_1434831_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1434981_1435401_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1435475_1437137_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_077077929.1|1437152_1438052_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1438166_1439171_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1439228_1440317_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1440398_1440641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1440782_1441337_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1441344_1441725_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1441815_1443741_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1443841_1444975_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1445143_1447894_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1448226_1448601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1448638_1449181_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1449184_1450357_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1450378_1451266_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1451358_1452309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1452475_1452829_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1452841_1453204_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1453245_1453671_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1453873_1455130_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1455328_1456309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1456458_1457700_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1457798_1458749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1458757_1459453_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1462274_1462874_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1462884_1465050_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1465073_1466858_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1466857_1466947_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1467641_1467914_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1467913_1469980_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010930363.1|1469976_1470927_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1471025_1471976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1547436	1615521	4103704	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1547436_1547925_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1548042_1548621_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1548726_1549095_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1549193_1550144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1550150_1551263_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1551949_1553152_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1553355_1556016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1556028_1559433_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1560100_1562326_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1562372_1562699_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1562749_1563358_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1563456_1564407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1564476_1565241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1565237_1565774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1565940_1566792_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1566851_1567478_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1567474_1568425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1568523_1569636_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1569625_1570627_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1570732_1572244_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1572240_1573545_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1573656_1574217_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1574484_1575039_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1575494_1575710_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1575964_1578562_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1578558_1579746_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1580403_1581018_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1581106_1582228_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1582245_1583151_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1584043_1584994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1585175_1585928_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1585996_1586656_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1586652_1587381_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1587393_1589673_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1589697_1589901_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1589942_1590575_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1590710_1591628_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1591624_1592338_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1592575_1593346_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1593350_1593950_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1594194_1595685_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1595743_1596028_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1596593_1597520_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1597656_1598397_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1598563_1599940_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1600121_1601027_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1602678_1604481_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1604598_1605249_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1605347_1606298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1606319_1607540_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1607725_1609138_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1609201_1610269_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1610268_1611756_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1611765_1612710_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1612869_1613568_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1613645_1614551_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1614570_1615521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1651470	1707061	4103704	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1651470_1652421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1652479_1653253_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1653245_1654802_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1654798_1655749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1657075_1657678_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1657917_1658619_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1658612_1659395_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1659579_1660530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1660628_1661366_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1661555_1662314_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1662360_1663350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1663527_1664496_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1666035_1667004_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1667012_1667954_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1668427_1669438_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1669428_1670943_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1670939_1672286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1672288_1673323_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1673372_1674998_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1675550_1676501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1676605_1677553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1677606_1679421_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1679413_1680088_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1680217_1683292_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1683305_1683605_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1683919_1684543_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1684786_1685656_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1685633_1686578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1686663_1687590_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1687702_1688482_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1688472_1689669_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1689699_1690650_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1690871_1691561_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019249354.1|1691625_1692381_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1692432_1693425_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1693434_1694388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1694503_1695466_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1696867_1697296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1697292_1698243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1698536_1699259_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1699697_1700885_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1700888_1701239_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1702988_1703960_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1703973_1704687_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1704691_1705609_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1705715_1706012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1706110_1707061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	1939825	2009477	4103704	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1939825_1942483_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1942560_1943763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1943759_1944272_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1944394_1944832_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1945108_1946059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1946157_1947108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1947271_1949167_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1949280_1949448_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1949511_1949748_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1950116_1951268_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1952831_1953782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1954233_1955235_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1955407_1956265_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1956261_1957524_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1957624_1957999_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1958071_1959259_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1959343_1960114_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1960227_1960992_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1960942_1962244_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1962240_1963047_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1964791_1965763_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1965919_1966432_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1966590_1967565_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1968565_1969360_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1969385_1970192_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1970302_1970893_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1970903_1972082_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1972184_1972559_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1972811_1974143_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1974209_1977440_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1978930_1979677_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1979761_1980223_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1980260_1981319_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1981281_1983111_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1983150_1983723_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1985147_1985969_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1986287_1987610_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1987969_1988605_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1988564_1989515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1990385_1991258_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1991335_1992475_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1992833_1994090_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1994095_1994623_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1994627_1995446_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1995445_1996168_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1996189_1996504_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1996521_1997670_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1997700_1998576_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1998572_1999892_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1999964_2001161_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2001171_2002659_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2005253_2006153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2006290_2007256_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2007354_2008305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2008526_2009477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2020973	2071949	4103704	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2020973_2021924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2023061_2023358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2023532_2024885_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2025027_2026044_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2028023_2029037_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2029123_2030029_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2030185_2030530_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2030687_2031146_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2031159_2033376_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2033372_2034434_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2034462_2035437_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2035388_2036207_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2036219_2036828_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2037002_2037398_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2037416_2038856_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2038884_2039232_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2039250_2040201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2040853_2041804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2041887_2043705_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2043778_2044426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2044438_2045368_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2045537_2046002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2046249_2046930_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2046978_2048670_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2048685_2049237_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2049233_2049605_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2049717_2050554_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2050564_2051089_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2051186_2051366_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2051495_2052470_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2052600_2052957_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2052946_2053822_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2053920_2054805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2054826_2056122_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2057070_2057721_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2057808_2059329_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2059586_2061452_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2062497_2063448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2064420_2064780_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2064767_2066204_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2066200_2066854_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2066850_2068044_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2068147_2069422_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2069418_2070369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2070998_2071949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2082622	2123313	4103704	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2082622_2083573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2083671_2084622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2084581_2084995_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2085279_2085579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2085988_2088271_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2088736_2088931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2088956_2090987_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2091006_2091219_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2091496_2092036_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2092149_2093445_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2093521_2094679_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2094862_2095762_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2095780_2097085_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2097050_2098157_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2098244_2098481_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2098619_2099690_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2099693_2101049_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2101075_2102233_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2102238_2102877_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2102878_2104174_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2104223_2105510_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2105525_2106032_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2106028_2107177_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2107204_2107630_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2107952_2110835_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2110927_2111683_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2112448_2113798_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2113896_2114847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2114945_2115896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2115969_2116443_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2116468_2117677_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2117673_2118447_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2118446_2119070_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2119235_2119496_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2119799_2120381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2120447_2120702_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2120688_2123313_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2151096	2216645	4103704	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2151096_2152047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2152247_2153057_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2153181_2154132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2154128_2155022_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2155146_2155341_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2155340_2155682_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2155691_2157554_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2157683_2158196_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2158198_2158522_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2158523_2158934_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2158971_2160183_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2160200_2160713_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2160928_2161420_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2161672_2163709_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2163786_2164989_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2165117_2165768_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2167325_2168276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2168846_2169059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2169076_2169808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2169842_2170484_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2170476_2171145_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2173357_2174134_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2174155_2175313_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2175309_2175741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2175737_2176535_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2176554_2176956_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2177022_2177994_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2178059_2179283_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2179510_2180461_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2180584_2183038_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2183226_2184531_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2184635_2185289_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2185291_2186602_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2186780_2187359_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2187470_2187671_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2188016_2188583_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2188666_2188870_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2189176_2189497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2189538_2189820_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2189894_2191151_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2191533_2191863_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2193433_2194255_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2194254_2195394_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2195400_2196297_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2196311_2198219_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2198578_2201191_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2201243_2203544_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2203540_2204749_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2205010_2205385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2205381_2206332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2206430_2208425_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2208484_2209450_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2209439_2212301_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2212303_2212810_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2212914_2214123_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2214124_2215063_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2215224_2215698_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2215694_2216645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2540315	2578905	4103704	protease,transposase	Planktothrix_phage(14.29%)	35	NA	NA
WP_005012808.1|2540315_2541266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2541444_2543139_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543135_2544221_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544268_2545168_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545178_2545823_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546844_2550087_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550097_2551252_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551478_2552441_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552539_2553490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553588_2554539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554548_2555238_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555297_2555735_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555780_2556674_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556721_2557894_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557890_2559045_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559241_2559592_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559581_2560016_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560032_2560983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561130_2561598_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561578_2562736_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562801_2563728_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563845_2564796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2564830_2565256_-	membrane protein	NA	NA	NA	NA	NA
WP_010930359.1|2565379_2566099_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2566166_2568530_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2568691_2569519_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2569530_2570304_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2570300_2570906_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2570892_2572074_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2572070_2572865_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2572865_2573321_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2573392_2574484_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2574492_2575056_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2575181_2577518_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2577570_2578905_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 22
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2607076	2673576	4103704	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607076_2608027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608396_2608969_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608971_2609982_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609974_2610475_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610485_2610827_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610895_2611630_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611646_2611916_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611938_2612727_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612773_2613790_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614006_2615449_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615627_2617247_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617367_2619188_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619266_2620799_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620832_2622479_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622548_2623571_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623588_2624722_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624724_2625414_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625413_2626199_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626242_2627007_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627045_2628467_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628532_2629237_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629284_2629704_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629716_2630124_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630307_2631018_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631144_2631435_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631452_2631935_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2636440_2637595_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637900_2638917_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639163_2639952_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640018_2640699_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640695_2641466_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641564_2642515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642570_2643488_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643498_2644677_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644696_2645692_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647280_2647889_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647876_2648917_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648934_2649897_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649893_2651087_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651083_2651881_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651906_2652893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652911_2654951_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655152_2655833_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655846_2656758_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656754_2657333_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657471_2658377_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658384_2661804_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661791_2664392_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665347_2665980_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666373_2667132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667128_2668331_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668518_2669469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670376_2671522_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671508_2672264_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672380_2672560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2672625_2673576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2836141	2901725	4103704	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2836141_2837092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2837190_2838141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2838343_2839333_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2839416_2839770_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839847_2840456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2842129_2842708_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842732_2843686_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843725_2844643_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844764_2845691_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845698_2846445_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846771_2847713_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847939_2849637_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2850071_2851493_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851646_2852426_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852550_2853429_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853534_2854659_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854704_2855667_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855659_2856514_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856621_2857032_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2857028_2857979_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858077_2858959_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859036_2860416_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860454_2861300_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2861315_2861630_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861662_2862199_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2862371_2862947_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863049_2863787_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863854_2865492_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865599_2866355_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866342_2867305_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2867412_2868207_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868268_2870344_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870508_2872884_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872964_2874320_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875798_2876521_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876575_2877559_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877688_2878639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878635_2879538_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879625_2880384_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880396_2881488_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881585_2883013_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883242_2884457_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884502_2887373_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889783_2890272_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890397_2893094_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893248_2895531_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895695_2896328_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2896426_2897377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2897423_2897978_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898045_2898891_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898960_2899929_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899928_2901725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2919295	2980322	4103704	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2919295_2920816_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920858_2921161_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921157_2921790_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921868_2923734_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923730_2924525_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924553_2925669_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926573_2927452_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927451_2928276_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2928443_2929394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929606_2932456_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2932437_2933166_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933306_2934770_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934766_2935138_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935155_2936469_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936505_2936964_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937076_2938027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938023_2939037_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939176_2940163_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940521_2941229_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941809_2942760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942911_2943514_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943532_2944165_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944209_2944461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944402_2946289_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946307_2947150_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947146_2948505_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948725_2949520_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949750_2951244_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951479_2953561_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953755_2954796_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954930_2955947_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955968_2956826_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956870_2957647_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2958014_2958965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958991_2959456_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960662_2962951_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963067_2963940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963982_2965137_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965171_2966002_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966085_2967630_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967672_2968032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968033_2968447_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968487_2968805_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968889_2969606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969869_2971291_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971357_2974105_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2974437_2975454_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975789_2976431_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976521_2977958_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978115_2979189_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979185_2980322_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 25
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	2984075	3056592	4103704	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2984075_2985092_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986029_2987457_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987453_2988476_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988465_2988939_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989079_2989967_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989963_2991607_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991603_2992611_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993441_2994458_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994557_2995190_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995198_2995588_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995640_2996693_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997556_2999263_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999336_2999837_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999851_3001909_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001935_3002229_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002330_3003278_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003290_3004166_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004286_3004847_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004881_3005205_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005640_3006378_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006676_3007627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007870_3008134_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008207_3008489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008505_3009366_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009362_3009698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009751_3010402_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012082_3013027_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013072_3013390_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013392_3014331_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014508_3014994_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3015012_3015561_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015592_3015745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3017074_3017716_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017870_3020219_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020215_3021154_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021179_3022370_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022366_3023140_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023169_3024363_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024480_3025491_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025508_3027545_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027739_3028480_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028578_3029529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029571_3030747_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030968_3032759_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032771_3034433_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034445_3037151_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037443_3039198_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039194_3039821_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039817_3040669_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040798_3042859_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043045_3043660_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043805_3044057_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044126_3045509_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045505_3048685_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049492_3050410_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050461_3051193_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051252_3051825_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053333_3054350_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054487_3055537_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055641_3056592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	3075992	3140932	4103704	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3075992_3076943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077041_3077626_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077660_3078650_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078646_3079588_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079584_3080805_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080847_3081162_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081353_3081713_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081714_3083430_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083617_3084289_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084303_3085632_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085628_3086528_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086614_3087700_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087692_3088823_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088825_3091507_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091877_3092459_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092584_3093310_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093306_3093984_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094199_3095381_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096153_3096336_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096365_3097316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097445_3097838_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098114_3099026_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099150_3100125_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100121_3101072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101170_3102256_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102353_3102764_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103379_3105293_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3105428_3108041_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108042_3108777_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108940_3110122_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110118_3110331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110327_3111308_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111353_3112181_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112330_3114145_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114199_3114583_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114579_3115530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115642_3115894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3116087_3116303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116399_3117518_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117637_3117850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118009_3118231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118283_3119234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3120410_3121781_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121813_3122605_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122617_3123673_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123698_3124574_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124679_3124928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124962_3126417_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3126413_3126935_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126963_3128316_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128539_3131428_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133572_3134874_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134888_3135605_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135886_3136567_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3137094_3137754_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138152_3139985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139981_3140932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	3232555	3301558	4103704	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232555_3233506_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233502_3234522_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234531_3237240_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237387_3238044_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238142_3239093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239240_3240134_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240333_3242028_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242062_3242989_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243057_3244155_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244173_3245037_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245048_3245831_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245827_3246946_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246942_3248475_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248515_3249523_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249667_3250390_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250405_3251428_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251744_3252479_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252563_3254309_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254305_3255058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255102_3256059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256147_3256714_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256721_3257582_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257611_3258340_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258371_3259055_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259892_3260807_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260871_3261780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261870_3263295_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263296_3264619_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264615_3266754_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266831_3271952_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272052_3272361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3272430_3272988_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273003_3274485_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274539_3276393_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276655_3277993_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278027_3280025_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280042_3282091_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853298.1|3282221_3283088_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283356_3284322_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284436_3285585_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286009_3286321_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286354_3286615_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286764_3287898_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287968_3289105_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289270_3290065_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290127_3290571_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290686_3291637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291759_3292167_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292239_3294435_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294656_3295607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295566_3296091_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296222_3297194_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297313_3299758_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299773_3300364_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3300607_3301558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	3317004	3417117	4103704	terminase,tRNA,transposase,tail,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3317004_3317955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318686_3319064_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319048_3319750_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319893_3320586_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320585_3321689_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321798_3324171_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324167_3325727_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325751_3326549_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326580_3327726_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327830_3329273_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329275_3330505_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332642_3333593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334722_3335280_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335255_3335606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335774_3336569_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336565_3337615_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337614_3338304_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338390_3338888_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338919_3340236_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340252_3341227_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341263_3341722_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341721_3342402_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342404_3342833_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342885_3344616_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344681_3345254_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345234_3345921_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346276_3346948_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347276_3347498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347497_3347779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347775_3348291_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348290_3348842_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348820_3349063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349067_3349880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349879_3350143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350183_3350381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350361_3350778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350782_3354739_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354731_3355121_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355117_3355651_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355718_3356078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356087_3358700_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358725_3359016_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359033_3359363_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359372_3359891_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360145_3360646_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360653_3361076_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361072_3361471_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361467_3361863_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361862_3362051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362064_3362547_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362609_3362861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363535_3364486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364914_3365517_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365639_3365882_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365887_3366943_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366971_3368390_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368392_3369670_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369656_3370142_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370781_3371732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371988_3372678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372670_3372922_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373476_3374088_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374159_3374366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374617_3375568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375666_3376740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376907_3377702_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377741_3378266_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378258_3380001_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380210_3380969_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380971_3381679_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381695_3382577_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382587_3383346_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383314_3384070_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384139_3385558_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385579_3386230_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386363_3386699_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386787_3387738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387814_3389635_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389639_3390713_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390835_3391804_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391877_3392789_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392807_3393380_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393460_3394009_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394008_3395598_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395667_3395907_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395947_3396973_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397038_3398220_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398316_3398769_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398778_3400119_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3400435_3401473_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401854_3402214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402297_3403239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403313_3404264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404557_3405652_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405742_3406615_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406636_3407476_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407551_3409069_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409165_3410266_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410282_3410705_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410727_3410940_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410986_3411907_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412089_3412839_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412841_3413171_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413458_3414811_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414822_3415206_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415267_3416068_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416166_3417117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	3703733	3836659	4103704	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	114	3748376:3748393	3793016:3793033
WP_005013747.1|3703733_3704684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3704680_3705316_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3705445_3706345_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3706440_3706932_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3706978_3707944_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709077_3710319_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3710432_3711449_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711483_3711960_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712102_3713011_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713124_3714237_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714337_3714823_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3714959_3716210_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716311_3716824_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3716922_3717873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3717938_3718877_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3718899_3719526_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719522_3720179_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720175_3720778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3720784_3721372_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3721552_3722122_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722192_3723512_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723618_3723810_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724061_3725351_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725505_3726501_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726585_3727260_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727256_3728207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728368_3729610_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729606_3730551_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3730669_3731620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731579_3732509_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732562_3732898_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3732942_3733707_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3733730_3734471_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3734478_3736032_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736066_3737044_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737316_3737898_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3737949_3744852_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3745298_3745430_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3745695_3745902_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3746906_3747566_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3747593_3748739_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3748376:3748393	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3748879_3749215_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3749289_3750150_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3750413_3751115_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3751284_3751680_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3751789_3752740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3752750_3753392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3753558_3753801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3753899_3754850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3754885_3755353_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3755586_3755964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3755960_3756143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3756146_3757133_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3757129_3757777_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3757834_3758362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3758398_3759583_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3759593_3759935_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3760047_3760248_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3760244_3761234_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3762720_3764691_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3764932_3765331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3765339_3766263_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3766720_3767671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3767901_3769593_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3769641_3769914_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3769910_3770282_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3770377_3770512_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3770917_3772327_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3772329_3773439_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3773533_3775987_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3776105_3776897_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3777016_3778444_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3778482_3779454_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3779872_3781036_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3781123_3781969_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3783525_3784476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3785030_3785405_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3785479_3786538_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3786561_3787512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3790393_3791563_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3791663_3793271_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3793016:3793033	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3793317_3795339_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3795367_3795613_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3795626_3796817_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3797012_3797978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3798000_3799140_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3799351_3800314_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3800437_3802462_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3802658_3804902_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3805180_3805639_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3806566_3809188_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3809251_3811879_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3812030_3813095_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3813094_3813865_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3813873_3814707_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3814719_3815499_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3815572_3817006_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3817033_3817792_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3817847_3819698_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3819791_3820268_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3820284_3821205_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3821311_3821812_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3822185_3822878_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3823186_3824137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3824133_3827907_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3828243_3830133_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3830144_3831038_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3831141_3831939_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3831935_3832787_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3832848_3833529_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3833556_3833892_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3833892_3834852_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3834872_3835361_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3835642_3836659_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011235	Bordetella pertussis strain H834 chromosome, complete genome	4103704	4002772	4067684	4103704	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4002772_4003258_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003346_4003484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003476_4004457_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004723_4005533_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005572_4006253_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006246_4006705_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006716_4007079_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007161_4007845_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007900_4008209_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008227_4008542_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008538_4011013_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011020_4012412_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012408_4012594_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012572_4013274_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013270_4014092_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014072_4015197_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015189_4016209_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016414_4017305_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017549_4018341_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018423_4018798_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018775_4020185_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020177_4021560_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021894_4023499_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023576_4024548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024558_4025485_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025875_4026826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026995_4028222_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028421_4029288_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029280_4030243_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030343_4031294_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031392_4032343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032441_4033392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033388_4034882_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034878_4037986_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037982_4041051_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041047_4042298_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042478_4043231_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043272_4043917_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043925_4044906_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045005_4045749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045831_4046179_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046276_4047119_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047163_4048051_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048077_4048266_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048363_4049821_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4049807_4051334_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051352_4051820_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051819_4052842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052962_4053703_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053757_4054858_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054859_4056050_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056169_4057186_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057504_4058176_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058172_4059081_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059292_4059940_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063800_4064868_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064878_4065688_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065777_4066551_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066733_4067684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
