The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	27282	70036	4106355	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	77634	136108	4106355	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	164893	219510	4106355	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	225502	287973	4106355	protease,transposase,tRNA	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	391906	449415	4106355	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	591425	652616	4106355	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591425_592376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592851_593742_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593738_594560_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594759_595251_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595269_596343_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596389_597493_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597568_598189_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598209_598719_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598773_599025_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599088_600222_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600229_600616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600612_603132_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603560_603899_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603895_604402_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604463_605264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605374_606316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606409_607945_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609624_611475_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611478_612312_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612311_613253_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613504_614476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614617_616906_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617212_618121_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618175_619141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619215_620877_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620948_621659_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621625_621790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621807_622758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623456_623840_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623897_624500_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624517_624919_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625034_625946_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625942_626524_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627318_628053_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628093_629143_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629290_629869_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630255_631233_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631326_635721_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635921_636770_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636928_637741_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637796_638747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638845_639646_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639707_640091_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640102_641455_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641742_642072_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642074_642824_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643006_643927_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643973_644186_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644208_644631_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644647_645748_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645844_647362_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647437_648277_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648298_649171_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649261_650356_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650649_651600_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651674_652616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	657940	704131	4106355	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657940_658966_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659006_659246_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659315_660905_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660904_661453_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661533_662106_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662124_663036_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663109_664078_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664200_665274_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665278_667099_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667175_668126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668214_668550_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668683_669334_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669355_670774_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670843_671599_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671567_672326_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672336_673218_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673234_673942_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673944_674703_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674912_676655_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676647_677172_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677211_678006_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678173_679247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679345_680296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680547_680754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680825_681437_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681991_682243_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682235_682925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682942_683164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683181_684132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684771_685257_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685243_686521_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686523_687942_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687970_689026_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689031_689274_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689396_689999_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690427_691378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692052_692304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692366_692849_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692862_693051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693050_693446_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693442_693841_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693837_694260_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694267_694768_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695022_695541_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695550_695880_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695897_696188_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696213_698826_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698835_699195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699262_699796_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699792_700182_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700174_704131_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	710297	764227	4106355	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710297_712028_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712080_712509_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712511_713192_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713191_713650_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713686_714661_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714677_715994_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716025_716523_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716609_717299_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717298_718348_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718344_719139_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719307_719658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719633_720191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721320_722271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724408_725638_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725640_727083_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727187_728333_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728364_729162_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729186_730746_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730742_733115_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733224_734328_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734327_735020_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735163_735865_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735849_736227_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736958_737909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738068_738941_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739281_739500_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739539_740919_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740960_742358_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742397_744050_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744053_744938_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744937_745879_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745957_747577_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747743_748559_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748626_749196_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749196_750147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750801_751899_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751932_753198_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753355_754306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754549_755140_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755155_757600_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757719_758691_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758822_759347_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759306_760257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760478_762674_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762746_763154_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763276_764227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	886816	954791	4106355	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886816_887833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888029_889013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890611_892000_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892030_893020_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893130_894363_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894644_895445_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895467_897699_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898486_898933_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898954_899701_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899844_900822_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901455_902067_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902060_903278_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903418_904369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904365_905085_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905205_907365_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907455_907725_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907813_908020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908018_908546_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908564_909344_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909511_910528_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910600_911092_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911102_912818_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913981_914932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914928_916761_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917159_917819_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918346_919027_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919308_920025_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920039_921341_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923485_926374_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926597_927950_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927978_928500_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928496_929951_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929985_930234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930339_931215_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931240_932296_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932308_933100_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933132_934503_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935679_936630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936682_936904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937063_937276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937395_938514_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938610_938826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939019_939271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939382_940333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940329_940713_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940767_942582_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942731_943559_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943604_944585_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944581_944794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944790_945972_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946135_946870_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946871_949484_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949619_951533_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952148_952559_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952656_953742_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953840_954791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	998320	1070837	4106355	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998320_999271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999375_1000425_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000562_1001579_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003087_1003660_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003719_1004451_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004502_1005420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006227_1009407_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009403_1010786_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010855_1011107_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011252_1011867_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012053_1014114_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014243_1015095_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015091_1015718_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015714_1017469_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017761_1020467_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020479_1022141_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022153_1023944_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024165_1025341_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025383_1026334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026432_1027173_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027367_1029404_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029421_1030432_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030549_1031743_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031772_1032546_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032542_1033733_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033758_1034697_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034693_1037042_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037196_1037838_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039167_1039320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039351_1039900_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039918_1040404_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040581_1041520_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041522_1041840_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041885_1042830_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044510_1045161_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045214_1045550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045546_1046407_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046423_1046705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046778_1047042_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047285_1048236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048534_1049272_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049707_1050031_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050065_1050626_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050746_1051622_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051634_1052582_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052683_1052977_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053003_1055061_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055075_1055576_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055649_1057356_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058219_1059272_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059324_1059714_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059722_1060355_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060454_1061471_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062301_1063309_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063305_1064949_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064945_1065833_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065973_1066447_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066436_1067459_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067455_1068883_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069820_1070837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1074590	1135617	4106355	transposase,holin,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1074590_1075727_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075723_1076797_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076954_1078391_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078481_1079123_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079458_1080475_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080807_1083555_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083621_1085043_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085306_1086023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086107_1086425_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086465_1086879_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086880_1087240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087282_1088827_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088910_1089741_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089775_1090930_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1090972_1091845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091961_1094250_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095456_1095921_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095947_1096898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096915_1097053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097265_1098042_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098086_1098944_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098965_1099982_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100116_1101157_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101351_1103433_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103668_1105162_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105392_1106187_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106407_1107766_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107762_1108605_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108623_1110510_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110451_1110703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110747_1111380_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111398_1112001_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112152_1113103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113683_1114391_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114749_1115736_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115875_1116889_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116885_1117836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117853_1117994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117948_1118407_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118443_1119757_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119774_1120146_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120142_1121606_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121746_1122475_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122456_1125306_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125518_1126469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126636_1127461_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127460_1128339_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129243_1130359_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130387_1131182_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131178_1133044_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133122_1133755_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133751_1134054_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134096_1135617_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1153187	1219819	4106355	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153187_1154984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1154983_1155952_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156021_1156867_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156934_1157489_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_005012067.1|1157535_1158486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1158584_1159535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159633_1160266_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160429_1162712_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162866_1165563_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165688_1166177_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168587_1171458_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171503_1172718_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172947_1174375_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174472_1175564_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175576_1176335_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176422_1177325_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177321_1178272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178401_1179385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179439_1180162_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181640_1182996_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183076_1185452_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185616_1187692_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187753_1188548_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188655_1189618_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189605_1190361_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190468_1192106_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192173_1192911_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193013_1193589_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193761_1194298_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194330_1194645_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194660_1195506_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195544_1196924_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197001_1197883_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197981_1198932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198928_1199339_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199446_1200301_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200293_1201256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201301_1202426_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202531_1203410_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203534_1204314_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204467_1205889_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206323_1208021_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208247_1209189_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209515_1210262_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210269_1211196_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211317_1212235_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212274_1213228_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213252_1213831_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215504_1216113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216190_1216544_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216627_1217617_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1217613_1217802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1217819_1218770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218868_1219819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1318955	1387442	4106355	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1318955_1319906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320674_1321313_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322202_1322649_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322730_1323432_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323432_1324200_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324196_1325435_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325434_1326361_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326463_1327579_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327594_1328545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328898_1329480_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329476_1330310_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330520_1331834_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332010_1332892_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332911_1333763_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333815_1334904_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335014_1336142_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336376_1336988_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337086_1338037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338258_1338636_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338783_1339281_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339277_1339805_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339938_1340754_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340766_1341948_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1341995_1342889_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343015_1343486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343611_1344439_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344467_1345244_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345240_1345516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345530_1345995_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346006_1346708_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346817_1347318_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347400_1348579_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350206_1350542_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350729_1352178_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352235_1352580_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352686_1353226_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353318_1354269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354286_1354526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355007_1355439_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355620_1356025_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357261_1357585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357587_1358475_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358507_1358933_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359004_1359358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359597_1360104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360142_1361474_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361533_1362349_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362345_1363200_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366262_1368806_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370172_1371927_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371923_1374044_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374048_1376244_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376240_1379582_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382384_1383335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383400_1383580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383696_1384452_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384438_1385584_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386491_1387442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1447933	1503421	4106355	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447933_1448884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450085_1450532_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450524_1452000_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1451996_1452752_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452744_1453755_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453744_1455421_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455733_1456066_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456079_1456475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456484_1456811_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456807_1457134_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457060_1458083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458079_1458430_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458477_1458906_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458913_1460287_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460427_1460805_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461067_1462375_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462435_1463266_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463262_1463751_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463792_1465313_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465356_1465833_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466636_1469234_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469263_1470085_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470811_1471561_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471744_1472623_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472720_1473437_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473451_1474012_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474178_1474943_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1474962_1475820_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475816_1477016_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477055_1478390_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478442_1480779_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480904_1481468_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481476_1482568_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482639_1483095_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483095_1483890_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483886_1485068_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485054_1485660_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485656_1486430_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486441_1487269_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487430_1489794_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489861_1490581_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490704_1491130_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491164_1492115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492232_1493159_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493224_1494382_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494362_1494830_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1494977_1495928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495944_1496379_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496368_1496719_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496915_1498070_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498066_1499239_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499286_1500180_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500225_1500663_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500722_1501412_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501421_1502372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502470_1503421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1598118	1666205	4106355	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1598118_1598607_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598724_1599303_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599408_1599777_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599875_1600826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600832_1601945_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602631_1603834_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604037_1606698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606710_1610115_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610782_1613008_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613054_1613381_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613431_1614040_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614138_1615089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615158_1615923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615919_1616456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616622_1617474_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617533_1618160_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618156_1619107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619205_1620318_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620307_1621309_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621414_1622926_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622922_1624227_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624338_1624899_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625166_1625721_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626176_1626392_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626646_1629244_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629240_1630428_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631087_1631702_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631790_1632912_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632929_1633835_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634727_1635678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635859_1636612_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636680_1637340_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637336_1638065_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638077_1640357_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640381_1640585_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640626_1641259_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641394_1642312_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642308_1643022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643259_1644030_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644034_1644634_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644878_1646369_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646427_1646712_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647277_1648204_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648340_1649081_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649247_1650624_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650805_1651711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653362_1655165_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655282_1655933_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656031_1656982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657003_1658224_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658409_1659822_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659885_1660953_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660952_1662440_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662449_1663394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1663553_1664252_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664329_1665235_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665254_1666205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	1702154	1757745	4106355	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702154_1703105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703163_1703937_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703929_1705486_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705482_1706433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707759_1708362_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708601_1709303_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709296_1710079_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710263_1711214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711312_1712050_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712239_1712998_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713044_1714034_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714211_1715180_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716719_1717688_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717696_1718638_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719111_1720122_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720112_1721627_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721623_1722970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1722972_1724007_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724056_1725682_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726234_1727185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727289_1728237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728290_1730105_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730097_1730772_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730901_1733976_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1733989_1734289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734603_1735227_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735470_1736340_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736317_1737262_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737347_1738274_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738386_1739166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739156_1740353_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740383_1741334_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741555_1742245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742309_1743065_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743116_1744109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744118_1745072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745187_1746150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747551_1747980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1747976_1748927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1749220_1749943_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750381_1751569_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1751572_1751923_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753672_1754644_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754657_1755371_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755375_1756293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756399_1756696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756794_1757745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2077915	2135194	4106355	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|2077915_2078866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2078964_2081565_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2081671_2082676_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2082784_2084125_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2084165_2085194_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2085389_2085935_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2085931_2086492_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2086590_2087541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2087578_2088166_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2088183_2088567_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2089926_2091219_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2091353_2092394_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2092491_2093508_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|2093775_2094411_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2094548_2095307_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2095291_2096071_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2096088_2096973_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2096969_2097749_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2097775_2098453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2098741_2099494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2099612_2101013_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2101036_2101435_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2101610_2101811_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2101949_2102678_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2102811_2104227_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2104230_2105094_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2105106_2105856_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|2106098_2108054_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|2108035_2108704_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2109478_2110429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2110577_2110916_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2110973_2111135_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2111166_2111367_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2111632_2114206_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2114276_2116826_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2119376_2119865_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2119956_2121108_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2121161_2121983_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2122021_2123251_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2123379_2123820_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2123930_2124881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2124877_2125351_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2125512_2126451_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2126452_2127661_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2127765_2128272_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2128274_2131136_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2131125_2132091_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2132150_2134145_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2134243_2135194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2186443	2245713	4106355	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_077070288.1|2186443_2187394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2187518_2188328_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|2188528_2189479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2190752_2191970_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2193026_2193929_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2194005_2194878_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2195008_2195377_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2195434_2196481_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2196676_2197933_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2197937_2199275_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2199424_2200381_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2200483_2201416_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2201531_2201852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2201844_2202204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2202251_2203826_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2203878_2204823_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2204840_2205671_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2205663_2207298_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2207294_2208650_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2209556_2211134_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2211137_2212412_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2212509_2212884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2214599_2215733_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2215770_2216376_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2216372_2217191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2217262_2219887_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2219873_2220128_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2220194_2220776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2221079_2221340_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2221505_2222129_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2222128_2222902_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2222898_2224107_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2224132_2224606_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2224679_2225630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2225728_2226679_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2226777_2228127_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2228892_2229648_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2229740_2232623_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2232945_2233371_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2233398_2234547_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2234543_2235050_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|2235065_2236352_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|2236401_2237697_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2237698_2238337_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|2238342_2239500_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2239526_2240882_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2240885_2241956_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2242094_2242331_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2242418_2243525_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2243490_2244795_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2244813_2245713_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2255953	2300276	4106355	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|2255953_2256904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2257002_2257953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2258152_2259238_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2259253_2260015_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2260011_2260935_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2261033_2261558_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2261566_2262310_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2262405_2262645_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2262658_2262811_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2262896_2264387_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2264478_2265417_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2265413_2265590_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2265592_2266255_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2267876_2268020_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2268016_2268991_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2268885_2269140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2269157_2270108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2270104_2271379_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2271482_2272676_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2272672_2273326_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2273322_2274759_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2274746_2275106_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2275920_2276061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2276078_2277029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2278074_2279940_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2280197_2281718_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2281805_2282456_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2283404_2284700_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2284721_2285606_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2285704_2286580_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2286569_2286926_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2287056_2288031_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2288160_2288340_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2288437_2288962_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2288972_2289809_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2289921_2290293_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2290289_2290841_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2290856_2292548_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2292596_2293277_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2293524_2293989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2294158_2295088_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2295100_2295748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2295821_2297639_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2297722_2298673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2299325_2300276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2330049	2394418	4106355	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2330049_2331000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2331221_2332172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2332270_2333236_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2333373_2334273_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2336867_2338355_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2338365_2339562_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2339634_2340954_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2340950_2341826_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2341856_2343005_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2343022_2343337_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2343358_2344081_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2344080_2344899_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2344903_2345431_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2345436_2346693_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2347051_2348191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2348268_2349141_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2350011_2350962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2350921_2351557_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2351916_2353239_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2353557_2354379_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2355803_2356376_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2356415_2358245_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2358207_2359266_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2359303_2359765_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2359849_2360596_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2362086_2365317_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2365383_2366715_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2366967_2367342_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2367444_2368623_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2368633_2369224_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2369334_2370141_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2370166_2370961_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2371961_2372936_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2373094_2373607_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2373763_2374735_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2376479_2377286_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2377282_2378584_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2378534_2379299_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2379412_2380183_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2380267_2381455_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2381527_2381902_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2382002_2383265_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2383261_2384119_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2384291_2385293_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2385744_2386695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2388258_2389410_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2389778_2390015_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2390078_2390246_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2390359_2392255_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2392418_2393369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2393467_2394418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2535135	2600856	4106355	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2535135_2537079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2537075_2537996_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2538015_2538603_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2538595_2539486_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2539482_2540244_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2540249_2541134_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2541156_2542950_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2543080_2544568_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2544605_2545664_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2545663_2546164_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2546176_2546776_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2546772_2547273_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2547274_2548504_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2548693_2548933_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2549115_2549868_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2549869_2550805_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2550886_2551873_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2551872_2552931_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2552987_2553170_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2553221_2553815_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2553923_2554523_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2554519_2555230_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2555231_2556059_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2557875_2559117_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2559128_2559902_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559928_2560879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2560977_2561760_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561848_2563075_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2563800_2565186_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2565204_2565810_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565806_2567663_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2567659_2568460_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2568474_2569668_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569735_2570710_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570832_2572056_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2572166_2574371_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2574665_2575325_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2575332_2575539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575877_2576633_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2576903_2577419_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2577691_2578009_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2578196_2578433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2578723_2580079_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2580125_2581466_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2581567_2582200_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2582199_2584569_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2584601_2585561_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2585547_2586234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2586230_2586563_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2586678_2587629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2587727_2588678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2588674_2590741_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2590740_2591013_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2591707_2591797_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2591796_2593581_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2593604_2595770_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2595780_2596380_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2599201_2599897_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2599905_2600856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2686973	2727642	4106355	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2686973_2687924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688034_2688217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688316_2688913_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689096_2690188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690687_2691098_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2691156_2691486_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2691503_2693921_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693933_2694956_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695030_2695390_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695405_2695603_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695938_2696889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697083_2697533_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2697529_2698480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698590_2700039_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2700153_2700399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700538_2701489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701733_2702447_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702569_2702797_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703091_2703730_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703838_2704873_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704869_2705820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706235_2706760_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706763_2707033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707231_2708293_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708376_2710011_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710012_2710816_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710844_2711804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711807_2713322_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713358_2714363_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714794_2715265_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715300_2715912_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715942_2716566_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716646_2718179_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2718213_2719431_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719498_2720530_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720526_2721696_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2721689_2722370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2722531_2723374_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723536_2724508_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724679_2725558_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725580_2726651_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726691_2727642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2783107	2855977	4106355	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783107_2783524_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783634_2784267_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784295_2784739_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784760_2785852_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2785906_2786707_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786842_2787463_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2787602_2788076_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789215_2790166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790162_2797824_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798064_2802111_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802423_2803005_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803001_2804300_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804379_2805408_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805668_2806619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806615_2807566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807882_2808488_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808541_2809855_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809929_2810400_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810399_2811188_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811198_2812851_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812938_2813889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815050_2815557_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815553_2816318_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816333_2816618_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816682_2817672_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817843_2818773_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818744_2819431_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819464_2820010_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820054_2821320_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821316_2822219_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823400_2824345_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824439_2825957_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2825998_2827627_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827734_2828616_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831728_2832103_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832127_2832466_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832509_2834144_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834182_2835529_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835636_2837058_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837127_2837712_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837814_2838765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838899_2840006_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840016_2841114_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841258_2842464_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842470_2842992_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2842988_2843471_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843476_2843728_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843708_2844194_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844329_2847791_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847808_2848693_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848702_2849134_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849380_2849884_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849961_2851362_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851436_2852312_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852308_2853316_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853783_2854089_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854179_2854770_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854960_2855977_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2859120	2925931	4106355	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2859120_2860071_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860169_2861120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861116_2861911_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861942_2862647_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862721_2863522_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863518_2863926_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863922_2864564_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864556_2866557_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867817_2869149_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869145_2870096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871802_2872069_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872776_2873115_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877668_2878271_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878367_2879657_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879714_2880446_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880442_2881246_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881242_2882331_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882327_2883257_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883405_2884551_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884572_2885523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885540_2885699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885853_2889675_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889831_2890500_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890504_2892178_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892196_2893516_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893520_2895836_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895891_2898060_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898056_2903237_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903335_2903650_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903877_2904123_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904217_2904736_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904835_2906041_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906156_2907554_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907670_2908249_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908321_2909713_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909880_2910831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911111_2911732_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911728_2912142_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912138_2913182_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913237_2913426_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913435_2914200_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914290_2914947_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915038_2915797_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915822_2917424_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917624_2918629_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918729_2918993_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919110_2919887_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920477_2921428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923811_2924924_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924980_2925931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	2956317	2995506	4106355	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2956317_2957268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957285_2957435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957388_2958285_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960562_2962788_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962952_2964041_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2963997_2964651_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964698_2965496_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966027_2966978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967058_2968207_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968263_2969214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969312_2969618_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969646_2970081_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970082_2971327_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971323_2972034_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972048_2972960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973322_2973727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973723_2974182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974188_2975097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975093_2975960_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975946_2976774_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976784_2977912_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2978989_2980228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980269_2981532_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981538_2982291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982342_2982528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982803_2983268_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983299_2983959_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984103_2986212_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986208_2987159_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987262_2987883_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2987986_2988727_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989861_2990986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991031_2991400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991641_2992592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993627_2994170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994367_2994538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994555_2995506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	3381004	3434745	4106355	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381004_3381955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382359_3383004_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383028_3383613_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383713_3384331_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384333_3386049_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386045_3386354_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386370_3386988_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387032_3387335_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387435_3388290_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388477_3388702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388871_3389144_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389561_3389969_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390338_3391133_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391233_3392469_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392537_3393554_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393565_3394942_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394938_3396135_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396131_3397670_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397666_3398926_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400866_3401817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402583_3403678_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403670_3405005_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404958_3405642_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405667_3406831_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3406827_3407829_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407828_3408701_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408697_3409447_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409443_3410235_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410231_3411371_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411646_3412432_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412465_3413248_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413251_3413641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414780_3415644_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415679_3416768_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416764_3417715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069072.1|3418068_3421047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421973_3422852_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424800_3425751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425747_3426215_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426257_3427028_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427048_3427849_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427859_3429269_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429363_3430149_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430388_3431405_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431512_3431905_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432042_3432723_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432727_3433699_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433794_3434745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	3440900	3500200	4106355	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440900_3442664_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442775_3443654_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443766_3444582_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444585_3444837_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3444921_3445938_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446268_3446490_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448850_3449768_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450265_3451474_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451553_3453125_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453242_3454178_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454366_3455311_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_077069073.1|3455878_3461596_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461601_3462729_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462784_3463411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463682_3464699_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464794_3465505_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465501_3466491_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466586_3468218_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468220_3468958_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469113_3469986_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470335_3471475_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471471_3472131_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472202_3472835_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472864_3473383_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473393_3474503_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474549_3475404_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475405_3476308_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477530_3478481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3480237_3481227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481402_3482191_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482187_3483219_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483237_3483801_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483856_3485377_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485640_3486345_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486352_3487081_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487195_3487570_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487612_3488902_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488898_3490068_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490064_3490904_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490963_3491899_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491911_3492862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492960_3493923_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493954_3494314_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494438_3495341_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495342_3497115_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497149_3497926_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499249_3500200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	3515138	3573211	4106355	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515138_3516089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516217_3517351_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517394_3518300_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518302_3520003_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519999_3520920_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520927_3521905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521963_3522998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524972_3525209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525335_3526199_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526287_3527109_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527188_3527926_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527922_3528915_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529067_3529691_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529735_3530884_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533207_3534158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534498_3535449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535547_3536498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536794_3537292_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537334_3539110_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539117_3539984_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539990_3540725_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541894_3542689_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542978_3543569_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543602_3544931_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545005_3546151_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546262_3547261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547223_3547658_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549174_3550059_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550055_3551261_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551257_3552118_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552230_3554021_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554061_3554706_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554727_3555036_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555201_3556488_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557921_3558872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560823_3562038_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562143_3563133_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563129_3563738_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563750_3564380_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564376_3564997_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565028_3565820_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566671_3567127_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567145_3568072_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568125_3569412_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570342_3571215_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571211_3572162_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572260_3573211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011240	Bordetella pertussis strain I075 chromosome, complete genome	4106355	4005423	4070335	4106355	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005423_4005909_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005997_4006135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006127_4007108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007374_4008184_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008223_4008904_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008897_4009356_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009367_4009730_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009812_4010496_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010551_4010860_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010878_4011193_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011189_4013664_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013671_4015063_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015059_4015245_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015223_4015925_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015921_4016743_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016723_4017848_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017840_4018860_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019065_4019956_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020200_4020992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021074_4021449_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021426_4022836_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022828_4024211_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024545_4026150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026227_4027199_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027209_4028136_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028526_4029477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029646_4030873_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031072_4031939_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031931_4032894_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032994_4033945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034043_4034994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035092_4036043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036039_4037533_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037529_4040637_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040633_4043702_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043698_4044949_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045129_4045882_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045923_4046568_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046576_4047557_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047656_4048400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048482_4048830_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048927_4049770_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049814_4050702_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050728_4050917_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051014_4052472_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052458_4053985_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054003_4054471_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054470_4055493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055613_4056354_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056408_4057509_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057510_4058701_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058820_4059837_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060155_4060827_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060823_4061732_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061943_4062591_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066451_4067519_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067529_4068339_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068428_4069202_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069202_4069367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069384_4070335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
