The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	27282	70036	4106497	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	77634	123122	4106497	tRNA,transposase	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	233715	308059	4106497	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_005012067.1|233715_234666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|234662_235853_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|235974_236739_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|236825_237929_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|238120_239137_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|239418_239907_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|241250_241931_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|241992_242844_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|242840_243638_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|243741_244635_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|244646_246536_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|246872_250646_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|250642_251593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|251901_252594_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|252967_253468_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|253574_254495_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|254511_254988_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|255081_256932_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|256987_257746_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|257773_259207_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|259280_260060_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|260072_260906_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|260914_261685_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|261684_262749_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|262900_265528_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|265591_268213_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|269140_269599_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|269877_272121_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|272317_274342_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|274465_275428_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|275639_276779_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|276801_277767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|277962_279153_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|279166_279412_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|279440_281462_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|281508_283116_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|283216_284386_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|287267_288218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|288241_289300_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|289374_289749_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|290303_291254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|292810_293656_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|293743_294907_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|295325_296297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|296335_297763_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|297882_298674_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|298792_301246_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|301340_302450_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|302452_303862_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|304267_304402_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|304497_304869_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|304865_305138_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|305186_306878_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|307108_308059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	490423	608318	4106497	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|490423_491374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|491472_492423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|493145_494420_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|494506_495589_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|495599_496412_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|496448_496775_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|496779_497340_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|497580_498573_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|498591_499587_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|499602_500979_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|500971_503353_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|503369_503759_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|503885_504116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|504220_505171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|505269_506220_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|506216_507089_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|508019_509306_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|509359_510286_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|510304_510760_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|511611_512403_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|512434_513055_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|513051_513681_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|513693_514302_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|514298_515288_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|515393_516608_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|518559_519510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|520943_522230_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|522395_522704_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|522725_523370_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|523410_525201_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|525313_526174_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|526170_527376_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|527372_528257_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|529773_530208_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|530170_531169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|531280_532426_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|532500_533829_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|533862_534453_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|534742_535537_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|536706_537441_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|537447_538314_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|538321_540097_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|540139_540637_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|540933_541884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|541982_542933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|543273_544224_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|546547_547696_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|547740_548364_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|548516_549509_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|549505_550243_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|550322_551144_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|551232_552096_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|552222_552459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|554433_555468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|555526_556504_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|556511_557432_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|557428_559129_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|559131_560037_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|560080_561214_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|561342_562293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|562391_564461_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|564503_566606_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|566912_567989_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|568064_568949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|569131_569554_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|569563_570964_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|571006_571912_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|572010_573552_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|573586_574126_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|574138_574609_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|574746_574989_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|575105_575987_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|576059_576380_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|577231_578182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|579505_580282_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|580316_582089_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|582090_582993_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|583117_583477_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|583508_584471_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|584569_585520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|585532_586468_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|586527_587367_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|587363_588533_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|588529_589819_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|589861_590236_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|590350_591079_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|591086_591791_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|592054_593575_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|593630_594194_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|594212_595244_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|595240_596029_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|596204_597194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|598950_599901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|601123_602026_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|602027_602882_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|602928_604038_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|604048_604567_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|604596_605229_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|605300_605960_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|605956_607096_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|607445_608318_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	612732	676565	4106497	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|612732_613749_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|614020_614647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|614702_615830_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|615835_621553_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|622120_623065_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|623253_624189_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|624306_625878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|625957_627166_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|627663_628581_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|630941_631163_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|631493_632510_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|632594_632846_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|632849_633665_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|633777_634656_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|634767_636531_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|636646_637987_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|639056_640481_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|640480_641182_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|642686_643637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|643732_644704_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|644708_645389_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|645526_645919_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|646026_647043_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|647282_648068_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|648162_649572_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|649582_650383_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|650403_651174_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|651216_651684_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|651680_652631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|654579_655458_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|656384_659363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|659716_660667_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|660663_661752_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|661787_662651_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|663790_664180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|664183_664966_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|664999_665785_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|666060_667200_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|667196_667988_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|667984_668734_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|668730_669603_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|669602_670604_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|670600_671764_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|671789_672473_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|672426_673761_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|673753_674848_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|675614_676565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	695476	772785	4106497	tRNA,integrase,transposase,protease	Bacillus_phage(20.0%)	58	742613:742631	762501:762519
WP_023995489.1|695476_696427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|696525_698001_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|699588_700476_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|700478_701420_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|701465_703031_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|704808_706134_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|706316_707774_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|707737_708235_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|708265_709237_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|709289_709721_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|709850_710519_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|711247_712351_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|712456_713731_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|713742_714768_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|714769_716140_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|716140_717277_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|717323_719249_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|719245_720367_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|720363_721518_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|721514_722645_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|722652_724218_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|724224_725607_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|725885_726497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|726588_728004_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|728021_728732_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|728728_730051_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|730130_732092_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|732217_733531_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|733639_734938_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|735120_736029_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|736038_736248_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|736259_737939_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|738040_738994_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|739084_739912_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|739910_741797_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|741793_742393_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|742441_743341_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
742613:742631	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|743549_744500_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|744622_745237_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|745365_745962_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|745958_746741_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|746813_747905_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|748184_749312_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|749653_750700_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|751210_753967_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|753968_756920_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|756935_758147_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|758143_758344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|758330_759281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|759297_759792_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|759795_760053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|760596_761508_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|761589_761874_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|762657_763608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
762501:762519	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|764026_766591_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|766635_768489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|768821_770393_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|771834_772785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1019767	1121111	4106497	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1019767_1020883_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1020983_1021802_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1021899_1022511_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1022670_1024047_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1024109_1024568_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1024652_1025348_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1025409_1025691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1026253_1027006_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1027050_1028127_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1028123_1029074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1029176_1029839_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1029933_1030104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1030456_1031458_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1031460_1032657_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1032677_1033481_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1033561_1033858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1033888_1034452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1034492_1035350_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1035357_1036107_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1036128_1037001_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1037029_1037809_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1037842_1038640_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1041294_1041687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1041680_1042541_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1042544_1043507_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1044283_1044973_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1045833_1046784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1047133_1048003_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1048073_1048769_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1048758_1049268_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1049264_1050485_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1050432_1051335_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1052221_1053508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1053546_1054920_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1054958_1055660_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1055958_1056948_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1057048_1057510_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1057525_1058074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1058215_1059691_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1059796_1060888_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1060891_1061674_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1061683_1062472_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1063597_1064032_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1064028_1065039_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1065082_1066009_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1066295_1066664_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1066880_1067831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1067875_1070302_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1070350_1071043_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1071115_1072315_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1072332_1073238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1073353_1074283_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1074308_1075655_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1075667_1076432_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1076445_1077228_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1077420_1078371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1078432_1079542_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1080054_1080891_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1081017_1081926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1081922_1082873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1083258_1083801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1084836_1085787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1086028_1086397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1086442_1087567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1088701_1089442_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1089545_1090166_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1090269_1091220_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1091216_1093325_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1093469_1094129_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1094160_1094625_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1094900_1095086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1095137_1095890_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1095896_1097159_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1097200_1098439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1099516_1100644_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1100654_1101482_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1101468_1102335_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1103701_1104106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1104468_1105380_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1105394_1106105_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1106101_1107346_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1107347_1107782_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1107810_1108116_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1108214_1109165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1109221_1110370_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1110450_1111401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1111932_1112730_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1112777_1113431_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1113387_1114476_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1114640_1116866_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1119143_1120040_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1120160_1121111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1151497	1222468	4106497	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1151497_1152448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1152504_1153617_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1156000_1156951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1157541_1158318_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1158435_1158699_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1158799_1159804_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1160004_1161606_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1161631_1162390_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1162481_1163138_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1163228_1163993_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1164002_1164191_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1164246_1165290_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1165286_1165700_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1165696_1166317_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1166597_1167548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1167715_1169107_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1169179_1169758_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1169874_1171272_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1171387_1172593_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1172692_1173211_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1173305_1173551_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1173778_1174093_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1174191_1179372_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1179368_1181537_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1181592_1183908_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1183912_1185232_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1185250_1186924_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1186928_1187597_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1187753_1191575_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1191905_1192856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1192877_1194023_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1194171_1195101_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1195097_1196186_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1196182_1196986_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1196982_1197714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1197771_1199061_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1199157_1199760_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1204313_1204652_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1205359_1205626_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1207332_1208283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1208279_1209611_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1210871_1212872_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1212864_1213506_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1213502_1213910_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1213906_1214707_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1214781_1215486_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1215517_1216312_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1216308_1217259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1217357_1218308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1218406_1218841_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1218923_1221260_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1221451_1222468_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1269862	1350737	4106497	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1269862_1270813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1270809_1271760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1272020_1273049_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1273128_1274427_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1274423_1275005_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1275317_1279364_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1279604_1287266_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1287262_1288213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1289352_1289826_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1289965_1290586_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1290721_1291522_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1291576_1292668_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1292689_1293133_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1293161_1293794_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1293904_1294321_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1294313_1295006_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1295112_1295487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1295563_1296373_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1296468_1297413_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1297451_1298423_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1298513_1298951_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1299009_1299891_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1300894_1301755_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1301787_1303170_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1303166_1304186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1304558_1305053_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1305060_1305801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1305881_1307486_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1307525_1308314_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1308439_1310605_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1311485_1312298_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1312310_1312619_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1312736_1314467_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1314468_1315671_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1315743_1316412_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1316533_1317001_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1317136_1318519_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1318515_1319640_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1319636_1322273_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1322688_1323639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1327385_1327997_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1328219_1329680_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1329776_1331369_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1331722_1331980_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1331981_1333322_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1333417_1334107_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1334119_1335550_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1337274_1338096_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1338106_1339678_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1339706_1340684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1340710_1341514_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1341510_1342305_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1342312_1343548_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1343561_1343975_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1344330_1344603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1344724_1345675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1346296_1348024_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1348135_1349494_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1349786_1350737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1470128	1522281	4106497	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1470128_1471079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1471245_1471599_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1471611_1471974_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1472015_1472441_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1472643_1473900_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1474098_1475079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1475228_1476470_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1476568_1477519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1477527_1478223_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1481044_1481644_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1481654_1483820_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1483843_1485628_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1485627_1485717_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1486411_1486684_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1486683_1488750_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1488746_1489697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1489795_1490746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1490861_1491194_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1491190_1491877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1491863_1492823_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1492855_1495225_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1495224_1495857_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1495958_1497299_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1497345_1498701_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1498991_1499228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1499415_1499733_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1500005_1500521_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1500791_1501547_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1501885_1502092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1502099_1502759_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1503053_1505258_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1505368_1506592_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1506714_1507689_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1507756_1508950_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1508964_1509765_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1509761_1511618_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1511614_1512220_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1512238_1513624_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1514349_1515576_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1515664_1516447_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1516545_1517496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1517522_1518296_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1518307_1519549_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1521330_1522281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1566206	1634291	4106497	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1566206_1566695_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1566812_1567391_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1567496_1567865_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1567963_1568914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1568920_1570033_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1570719_1571922_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1572125_1574786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1574798_1578203_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1578870_1581096_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1581142_1581469_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1581519_1582128_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1582226_1583177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1583246_1584011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1584007_1584544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1584710_1585562_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1585621_1586248_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1586244_1587195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1587293_1588406_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1588395_1589397_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1589502_1591014_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1591010_1592315_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1592426_1592987_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1593254_1593809_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1594264_1594480_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1594734_1597332_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1597328_1598516_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1599173_1599788_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1599876_1600998_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1601015_1601921_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1602813_1603764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1603945_1604698_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1604766_1605426_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1605422_1606151_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1606163_1608443_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1608467_1608671_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1608712_1609345_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1609480_1610398_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1610394_1611108_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1611345_1612116_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1612120_1612720_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1612964_1614455_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1614513_1614798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1615363_1616290_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1616426_1617167_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1617333_1618710_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1618891_1619797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1621448_1623251_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1623368_1624019_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1624117_1625068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1625089_1626310_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1626495_1627908_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1627971_1629039_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1629038_1630526_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1630535_1631480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1631639_1632338_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1632415_1633321_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1633340_1634291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1670240	1725831	4106497	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1670240_1671191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1671249_1672023_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1672015_1673572_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1673568_1674519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1675845_1676448_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1676687_1677389_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1677382_1678165_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1678349_1679300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1679398_1680136_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1680325_1681084_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1681130_1682120_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1682297_1683266_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1684805_1685774_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1685782_1686724_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1687197_1688208_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1688198_1689713_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1689709_1691056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1691058_1692093_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1692142_1693768_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1694320_1695271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1695375_1696323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1696376_1698191_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1698183_1698858_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1698987_1702062_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1702075_1702375_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1702689_1703313_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1703556_1704426_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1704403_1705348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1705433_1706360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1706472_1707252_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1707242_1708439_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1708469_1709420_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1709641_1710331_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1710395_1711151_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1711202_1712195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1712204_1713158_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1713273_1714236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1715637_1716066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1716062_1717013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1717306_1718029_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1718467_1719655_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1719658_1720009_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1721758_1722730_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1722743_1723457_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1723461_1724379_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1724485_1724782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1724880_1725831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1747489	1839459	4106497	tRNA,transposase	Brevibacillus_phage(14.29%)	60	NA	NA
WP_005012067.1|1747489_1748440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1748538_1749489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1749512_1749977_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1750123_1751332_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1751375_1751813_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1751931_1753221_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1755961_1756912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1757010_1758027_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1758205_1759240_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1759236_1759863_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1759859_1760912_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1760961_1761732_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1761782_1762619_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1762814_1763555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1763629_1764373_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1765034_1765808_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1766945_1768235_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1769845_1771093_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1771102_1772812_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1772808_1773747_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1773743_1775027_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1775030_1775513_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1775513_1776500_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1776672_1777392_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1777508_1778459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1781644_1782994_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1783051_1783846_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1783979_1784855_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1784898_1788615_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1788623_1789253_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_019247159.1|1800526_1800964_+	protein FimA	NA	NA	NA	NA	NA
WP_010930611.1|1801213_1801948_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1802010_1804632_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1804612_1805743_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1805735_1807490_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1808807_1809308_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1809314_1810289_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1811845_1812337_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1812350_1813316_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|1813336_1814038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1815212_1815725_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1815803_1819427_+	5-oxoprolinase	NA	NA	NA	NA	NA
WP_010930622.1|1819440_1820472_-	peptidase C45	NA	NA	NA	NA	NA
WP_003809983.1|1821631_1822465_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1822478_1823237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1823398_1824391_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1824608_1825385_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1825492_1826275_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1826401_1827988_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1828012_1828876_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1829083_1829860_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1829852_1830362_-	cyclophilin	NA	NA	NA	NA	NA
WP_010930629.1|1830490_1831174_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1831413_1832874_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1832893_1833538_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1833574_1834540_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1834638_1835589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1835649_1836684_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1836783_1838049_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1838442_1839459_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	1959644	2029296	4106497	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1959644_1962302_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1962379_1963582_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1963578_1964091_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1964213_1964651_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1964927_1965878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1965976_1966927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1967090_1968986_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1969099_1969267_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1969330_1969567_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1969935_1971087_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1972650_1973601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1974052_1975054_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1975226_1976084_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1976080_1977343_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1977443_1977818_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1977890_1979078_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1979162_1979933_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1980046_1980811_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1980761_1982063_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1982059_1982866_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1984610_1985582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1985738_1986251_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1986409_1987384_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1988384_1989179_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1989204_1990011_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1990121_1990712_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1990722_1991901_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1992003_1992378_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1992630_1993962_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1994028_1997259_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1998749_1999496_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1999580_2000042_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2000079_2001138_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2001100_2002930_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2002969_2003542_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2004966_2005788_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2006106_2007429_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2007788_2008424_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2008383_2009334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2010204_2011077_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2011154_2012294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2012652_2013909_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2013914_2014442_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2014446_2015265_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2015264_2015987_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2016008_2016323_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2016340_2017489_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2017519_2018395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2018391_2019711_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2019783_2020980_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2020990_2022478_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2025072_2025972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2026109_2027075_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2027173_2028124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2028345_2029296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2040792	2090188	4106497	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2040792_2041743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2042880_2043177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2043351_2044704_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2044846_2045863_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2047842_2048856_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2048942_2049848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2050004_2050349_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2050506_2050965_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2050978_2053195_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2053191_2054253_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2054281_2055256_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2055207_2056026_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2056038_2056647_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2056821_2057217_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2057235_2058675_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2058703_2059051_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2059069_2060020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060672_2061623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2061706_2063524_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2063597_2064245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2064257_2065187_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2065356_2065821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2066068_2066749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2066797_2068489_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2068504_2069056_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2069052_2069424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2069536_2070373_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2070383_2070908_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2071005_2071185_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2071314_2072289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2072419_2072776_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2072765_2073641_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2073739_2074624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2074645_2075941_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2076889_2077540_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2077627_2079148_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2079405_2081271_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2082316_2083267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2083284_2083425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2084239_2084599_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2084586_2086023_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2086019_2086673_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2086669_2087863_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2087966_2089241_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2089237_2090188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2101392	2142083	4106497	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2101392_2102343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2102441_2103392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2103351_2103765_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2104049_2104349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2104758_2107041_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2107506_2107701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2107726_2109757_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2109776_2109989_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2110266_2110806_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2110919_2112215_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2112291_2113449_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2113632_2114532_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2114550_2115855_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2115820_2116927_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2117014_2117251_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2117389_2118460_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2118463_2119819_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2119845_2121003_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2121008_2121647_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2121648_2122944_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2122993_2124280_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2124295_2124802_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2124798_2125947_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2125974_2126400_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2126722_2129605_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2129697_2130453_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2131218_2132568_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2132666_2133617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2133715_2134666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2134739_2135213_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2135238_2136447_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2136443_2137217_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2137216_2137840_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2138005_2138266_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2138569_2139151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2139217_2139472_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2139458_2142083_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2169866	2235415	4106497	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2169866_2170817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2171017_2171827_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2171951_2172902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2172898_2173792_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2173916_2174111_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2174110_2174452_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2174461_2176324_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2176453_2176966_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2176968_2177292_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2177293_2177704_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2177741_2178953_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2178970_2179483_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2179698_2180190_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2180442_2182479_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2182556_2183759_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2183887_2184538_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2186095_2187046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2187616_2187829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2187846_2188578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2188612_2189254_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2189246_2189915_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2192127_2192904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2192925_2194083_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2194079_2194511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2194507_2195305_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2195324_2195726_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2195792_2196764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2196829_2198053_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2198280_2199231_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2199354_2201808_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2201996_2203301_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2203405_2204059_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2204061_2205372_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2205550_2206129_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2206240_2206441_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2206786_2207353_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2207436_2207640_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2207946_2208267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2208308_2208590_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2208664_2209921_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2210303_2210633_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2212203_2213025_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2213024_2214164_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2214170_2215067_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2215081_2216989_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2217348_2219961_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2220013_2222314_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2222310_2223519_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2223780_2224155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2224151_2225102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2225200_2227195_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2227254_2228220_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2228209_2231071_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2231073_2231580_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2231684_2232893_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2232894_2233833_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2233994_2234468_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2234464_2235415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2321592	2385170	4106497	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2321592_2322543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2322844_2323321_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2323944_2325582_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2325612_2326926_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2327059_2327377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2327477_2328800_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2328796_2329747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2329845_2330796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2331325_2332348_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2332376_2333207_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2333223_2334921_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2334985_2336062_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2336221_2337085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2337115_2337685_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2337701_2338553_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2339610_2340492_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2340566_2341556_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2341618_2342569_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2342631_2343489_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2343548_2344037_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2345609_2346800_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2346796_2348383_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2348401_2349469_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2349573_2351118_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2351537_2353112_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2353228_2354236_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2354232_2355072_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2355076_2356714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2356710_2357661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2357803_2359078_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2359107_2359398_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2359470_2360484_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2360503_2361766_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2361768_2362692_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2362688_2364182_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2364192_2365125_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2365306_2366632_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2366666_2368022_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2368082_2369603_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2369757_2370489_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2370586_2371897_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2371912_2372824_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2372814_2373408_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2373469_2373856_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2373867_2374338_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2374349_2374973_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2374993_2377741_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2384219_2385170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2629585	2696085	4106497	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629585_2630536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630905_2631478_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631480_2632491_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632483_2632984_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632994_2633336_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2633404_2634139_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634155_2634425_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634447_2635236_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2635282_2636299_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636515_2637958_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638136_2639756_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639876_2641697_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641775_2643308_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2643341_2644988_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645057_2646080_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646097_2647231_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647233_2647923_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647922_2648708_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648751_2649516_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649554_2650976_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651041_2651746_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651793_2652213_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652225_2652633_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652816_2653527_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653653_2653944_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653961_2654444_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658949_2660104_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660409_2661426_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661672_2662461_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662527_2663208_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663204_2663975_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664073_2665024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665079_2665997_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666007_2667186_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667205_2668201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669789_2670398_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670385_2671426_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671443_2672406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672402_2673596_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673592_2674390_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674415_2675402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675420_2677460_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2677661_2678342_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678355_2679267_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679263_2679842_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679980_2680886_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680893_2684313_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684300_2686901_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687856_2688489_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688882_2689641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2689637_2690840_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691027_2691978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692885_2694031_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694017_2694773_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694889_2695069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695134_2696085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	2878488	3029194	4106497	tRNA,transposase,holin	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2878488_2879439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2879537_2880419_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2880496_2881876_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2881914_2882760_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2882775_2883090_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2883122_2883659_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2883831_2884407_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2884509_2885247_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2885314_2886952_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2887059_2887815_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2887802_2888765_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2888872_2889667_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2889728_2891804_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2891968_2894344_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2894424_2895780_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897258_2897981_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898035_2899019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899148_2900099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900095_2900998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901085_2901844_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901856_2902948_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903045_2904473_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904702_2905917_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905962_2908833_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911243_2911732_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911857_2914554_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914708_2916991_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2917155_2917788_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2917886_2918837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918883_2919438_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919505_2920351_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920420_2921389_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2921388_2923185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2925084_2929011_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929746_2932977_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933258_2934086_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934119_2934815_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934807_2936088_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936097_2937075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937056_2938757_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938859_2939963_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939993_2940749_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940755_2942276_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942318_2942621_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942617_2943250_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943328_2945194_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945190_2945985_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946013_2947129_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948033_2948912_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948911_2949736_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949903_2950854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951066_2953916_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953897_2954626_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954766_2956230_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956226_2956598_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956615_2957929_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957965_2958424_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2958536_2959487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959483_2960497_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960636_2961623_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961981_2962689_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963269_2964220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964371_2964974_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964992_2965625_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965669_2965921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965862_2967749_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2967767_2968610_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2968606_2969965_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2970185_2970980_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2971210_2972704_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2972939_2975021_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2975215_2976256_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2976390_2977407_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2977428_2978286_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2978330_2979107_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2979474_2980425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980451_2980916_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982122_2984411_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984527_2985400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985442_2986597_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986631_2987462_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987545_2989090_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989132_2989492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989493_2989907_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989947_2990265_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990349_2991066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991329_2992751_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995423_2996374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996353_2996608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996946_2997963_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998298_2998940_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999030_3000467_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000624_3001698_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001694_3002831_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002975_3003320_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003386_3005267_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005316_3006252_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006584_3007601_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008538_3009966_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009962_3010985_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010974_3011448_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011588_3012476_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012472_3014116_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3014112_3015120_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015950_3016967_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017066_3017699_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017707_3018097_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018149_3019202_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020065_3020830_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3020903_3021404_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021418_3023476_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023502_3023796_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023897_3024845_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024857_3025733_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025853_3026414_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026448_3026772_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027207_3027945_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028243_3029194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	3050145	3190713	4106497	transposase	Bacillus_virus(11.11%)	114	NA	NA
WP_010929969.1|3050145_3051096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051194_3052145_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052187_3053363_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053584_3055375_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055387_3057049_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057061_3059767_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060059_3061814_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061810_3062437_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062433_3063285_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3063414_3065475_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065661_3066276_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066421_3066673_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066742_3068125_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068121_3071301_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072108_3073026_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073077_3073809_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073868_3074441_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075949_3076966_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077103_3078153_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078257_3079208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079303_3080029_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080239_3080620_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080925_3081798_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081805_3082186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082339_3083614_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085101_3086010_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086807_3087872_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3089708_3090743_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090932_3091574_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091656_3093483_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093726_3094656_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094655_3095405_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095476_3096391_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096410_3097556_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097616_3098528_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098608_3099559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3099657_3100242_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3100276_3101266_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3101262_3102204_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3102200_3103421_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3103463_3103778_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3103969_3104329_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3104330_3106046_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3106233_3106905_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3106919_3108248_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3108244_3109144_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3109230_3110316_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3110308_3111439_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3111441_3114123_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3114493_3115075_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3115200_3115926_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3115922_3116600_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3116815_3117997_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3118769_3118952_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3118981_3119932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120061_3120454_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120730_3121642_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121766_3122741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122737_3123688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123786_3124872_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124969_3125380_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125995_3127909_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128044_3130657_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130658_3131393_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131556_3132738_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132734_3132947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132943_3133924_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133969_3134797_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134946_3136761_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136815_3137199_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137195_3138146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138258_3138510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3138703_3138919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139015_3140134_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140253_3140466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140625_3140847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140899_3141850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143026_3144397_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144429_3145221_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145233_3146289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146314_3147190_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147295_3147544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147578_3149033_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149029_3149551_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149579_3150932_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151155_3154044_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156188_3157490_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3157504_3158221_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158502_3159183_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3159710_3160370_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160768_3162601_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162597_3163548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164711_3166427_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166437_3166929_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167001_3168018_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168185_3168965_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168983_3169511_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3169509_3169716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3169804_3170074_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170164_3172324_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172444_3173164_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173160_3174111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3174251_3175469_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3175462_3176074_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3176707_3177685_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3177828_3178575_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3178596_3179043_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3179830_3182062_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3182084_3182885_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3183166_3184399_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3184509_3185499_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3185529_3186918_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3188516_3189500_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3189696_3190713_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	3255171	3324174	4106497	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3255171_3256122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256118_3257138_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257147_3259856_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260003_3260660_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260758_3261709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261856_3262750_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262949_3264644_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264678_3265605_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265673_3266771_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266789_3267653_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267664_3268447_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268443_3269562_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269558_3271091_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271131_3272139_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272283_3273006_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273021_3274044_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274360_3275095_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275179_3276925_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276921_3277674_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277718_3278675_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278763_3279330_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279337_3280198_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280227_3280956_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280987_3281671_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282508_3283423_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283487_3284396_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284486_3285911_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285912_3287235_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287231_3289370_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289447_3294568_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294668_3294977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295046_3295604_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295619_3297101_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3297155_3299009_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3299271_3300609_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300643_3302641_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302658_3304707_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304837_3305704_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305972_3306938_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307052_3308201_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3308625_3308937_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308970_3309231_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309380_3310514_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310584_3311721_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311886_3312681_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312743_3313187_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313302_3314253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3314375_3314783_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3314855_3317051_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317272_3318223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318182_3318707_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318838_3319810_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319929_3322374_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322389_3322980_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323223_3324174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	3339620	3439733	4106497	transposase,tail,terminase,tRNA,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3339620_3340571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341302_3341680_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341664_3342366_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342509_3343202_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343201_3344305_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344414_3346787_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346783_3348343_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348367_3349165_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349196_3350342_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350446_3351889_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351891_3353121_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355258_3356209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357338_3357896_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357871_3358222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358390_3359185_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359181_3360231_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360230_3360920_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361006_3361504_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361535_3362852_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3362868_3363843_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3363879_3364338_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364337_3365018_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365020_3365449_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365501_3367232_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367297_3367870_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367850_3368537_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368892_3369564_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369892_3370114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370113_3370395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370391_3370907_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370906_3371458_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371436_3371679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371683_3372496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372495_3372759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372799_3372997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372977_3373394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373398_3377355_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377347_3377737_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377733_3378267_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378334_3378694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378703_3381316_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381341_3381632_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381649_3381979_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381988_3382507_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382761_3383262_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383269_3383692_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383688_3384087_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384083_3384479_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3384478_3384667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384680_3385163_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385225_3385477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386151_3387102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387530_3388133_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388255_3388498_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388503_3389559_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389587_3391006_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391008_3392286_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392272_3392758_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393397_3394348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394604_3395294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395286_3395538_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3396092_3396704_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396775_3396982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397233_3398184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398282_3399356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399523_3400318_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400357_3400882_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400874_3402617_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402826_3403585_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403587_3404295_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404311_3405193_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405203_3405962_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405930_3406686_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406755_3408174_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408195_3408846_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408979_3409315_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409403_3410354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410430_3412251_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412255_3413329_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413451_3414420_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414493_3415405_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415423_3415996_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416076_3416625_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416624_3418214_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418283_3418523_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418563_3419589_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419654_3420836_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420932_3421385_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421394_3422735_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3423051_3424089_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424470_3424830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424913_3425855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425929_3426880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427173_3428268_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3428358_3429231_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429252_3430092_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430167_3431685_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431781_3432882_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432898_3433321_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3433343_3433556_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433602_3434523_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434705_3435455_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435457_3435787_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3436074_3437427_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3437438_3437822_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437883_3438684_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438782_3439733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	3600401	3655375	4106497	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600401_3601352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601468_3602536_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602611_3605740_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606247_3607213_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607215_3607887_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608043_3609003_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609010_3609673_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609669_3610620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610741_3611995_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611972_3612935_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613066_3613561_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613560_3614793_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3615538_3615820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615806_3616793_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616936_3617341_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617482_3620869_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620899_3622363_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3622371_3624000_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624085_3624745_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624774_3625215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625725_3625929_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626104_3627010_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627108_3628059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628157_3629108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630889_3632083_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632148_3633177_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633203_3634376_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3634501_3635479_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635489_3636461_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636527_3637313_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637305_3638538_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638733_3639489_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639599_3640118_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641906_3643307_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643406_3643751_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643839_3644310_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644720_3645119_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645250_3646201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648645_3649380_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649789_3649969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650159_3651473_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651488_3653000_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652996_3654202_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654397_3655375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	3745188	3860858	4106497	tRNA,transposase,protease	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3745188_3746139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746261_3746990_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747086_3748265_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748261_3749095_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749131_3749872_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749991_3751167_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751163_3752117_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752130_3752532_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752524_3753130_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753217_3753382_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753498_3754347_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754343_3754997_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755013_3756297_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756536_3758162_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758255_3758657_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758681_3759116_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759117_3760767_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760807_3761977_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3761979_3762843_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766206_3766911_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766904_3767699_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767695_3768661_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768664_3769585_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769681_3770845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771067_3771958_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771961_3772465_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772507_3773506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773502_3774453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774541_3774829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775020_3775971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776030_3776591_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778093_3778975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779088_3780291_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780419_3782279_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782356_3783166_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783236_3784238_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784269_3785130_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785329_3786334_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786330_3787917_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787925_3788852_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788874_3789501_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010930800.1|3789599_3790550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790546_3791683_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791736_3792513_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792537_3792996_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793135_3793777_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793841_3795224_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3795249_3796098_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796256_3796868_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3796877_3797327_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3797993_3798155_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3798230_3798446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798432_3799383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3800426_3800705_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3801847_3802396_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3802458_3804138_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3804134_3805886_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3805882_3806008_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3806021_3807176_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3807191_3808769_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3808894_3809440_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3809999_3810950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811680_3812661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812674_3813799_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813806_3815561_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815667_3816567_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816631_3817615_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817750_3818731_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818747_3820139_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820290_3820827_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820757_3822143_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822285_3822924_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3823010_3824900_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824896_3825838_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825943_3826993_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827245_3827947_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827943_3828642_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828642_3829998_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829994_3830486_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830504_3831461_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832871_3834974_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835144_3836188_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836231_3836975_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837996_3838407_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3839356_3840154_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840252_3841203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841199_3842150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842236_3843187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843301_3844303_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844393_3844960_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845278_3847192_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847233_3848664_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848776_3850189_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850205_3850901_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851119_3852070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852094_3852994_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853148_3853697_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853735_3854455_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3854625_3857469_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858062_3860858_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011242	Bordetella pertussis strain I975 chromosome, complete genome	4106497	4005565	4070477	4106497	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005565_4006051_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006139_4006277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006269_4007250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007516_4008326_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008365_4009046_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009039_4009498_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009509_4009872_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009954_4010638_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010693_4011002_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011020_4011335_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011331_4013806_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013813_4015205_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015201_4015387_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015365_4016067_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016063_4016885_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016865_4017990_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017982_4019002_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019207_4020098_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020342_4021134_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021216_4021591_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021568_4022978_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022970_4024353_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024687_4026292_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026369_4027341_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027351_4028278_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028668_4029619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029788_4031015_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031214_4032081_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032073_4033036_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033136_4034087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034185_4035136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035234_4036185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036181_4037675_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037671_4040779_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040775_4043844_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043840_4045091_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045271_4046024_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046065_4046710_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046718_4047699_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047798_4048542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048624_4048972_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049069_4049912_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049956_4050844_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050870_4051059_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051156_4052614_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052600_4054127_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054145_4054613_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054612_4055635_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055755_4056496_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056550_4057651_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057652_4058843_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058962_4059979_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060297_4060969_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060965_4061874_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062085_4062733_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066593_4067661_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067671_4068481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068570_4069344_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069526_4070477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
