The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	27282	70036	4103277	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	77634	136108	4103277	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	164893	225404	4103277	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077082162.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	233336	286924	4103277	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	555334	614634	4103277	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555334_556285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557608_558385_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558419_560192_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560193_561096_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561220_561580_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561611_562574_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562672_563623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563635_564571_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564630_565470_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565466_566636_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566632_567922_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567964_568339_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568453_569182_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569189_569894_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570157_571678_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571733_572297_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572315_573347_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573343_574132_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574307_575297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577053_578004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579226_580129_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580130_580985_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581031_582141_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582151_582670_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582699_583332_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583403_584063_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584059_585199_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585548_586421_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586576_587314_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587316_588948_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589043_590033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590029_590740_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590835_591852_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592123_592750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592805_593933_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593938_599656_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600223_601168_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601356_602292_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602409_603981_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604060_605269_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605766_606684_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609044_609266_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609596_610613_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610697_610949_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610952_611768_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611880_612759_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612870_614634_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	620789	674530	4103277	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620789_621740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621835_622807_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622811_623492_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623629_624022_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624129_625146_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625385_626171_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626265_627675_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627685_628486_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628506_629277_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629319_629787_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629783_630734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632682_633561_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634487_637466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637819_638770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638766_639855_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639890_640754_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641893_642283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642286_643069_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643102_643888_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644163_645303_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645299_646091_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646087_646837_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646833_647706_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647705_648707_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648703_649867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649892_650576_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650529_651864_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651856_652951_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653717_654668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656608_657868_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657864_659403_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659399_660596_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660592_661969_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661980_662997_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663065_664301_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664401_665196_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665565_665973_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666390_666663_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666832_667057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667244_668099_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668199_668502_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668546_669164_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669180_669489_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669485_671201_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671203_671821_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671921_672506_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672530_673175_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673579_674530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	723468	763418	4103277	integrase,protease,tRNA,transposase	Pseudomonas_phage(33.33%)	29	720716:720734	740604:740622
720716:720734	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723468_724065_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724061_724844_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724916_726008_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726287_727415_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727756_728803_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729313_732070_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732071_735023_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735038_736250_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736246_736447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736433_737384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737400_737895_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737898_738156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738699_739611_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739692_739977_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740760_741711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740604:740622	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742129_744694_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744738_746592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746924_748496_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749937_750888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750973_751714_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751940_752888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754275_755226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755419_756235_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756367_757807_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757820_758162_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758216_759872_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|760023_761034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761166_761940_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762467_763418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	773345	820963	4103277	protease,tRNA,holin,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773345_774296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774434_775187_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775461_777150_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777169_778429_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778443_779538_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779534_781598_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781673_782354_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782631_784005_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|784006_785026_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785089_786061_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786125_787076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787174_788017_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|788016_788352_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788422_789841_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790120_791161_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791240_791492_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791602_792766_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793049_793904_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793900_794791_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794833_795745_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795771_796464_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796478_797459_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797471_799613_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799661_800630_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800620_801289_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801249_802185_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802181_803078_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803074_803797_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803787_803952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804125_804629_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804905_806021_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806163_806628_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806775_807315_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807336_808671_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808684_808990_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809414_809996_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810077_811028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811126_812077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812517_813423_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|813478_815086_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815339_816845_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816859_817324_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817613_818564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818726_819257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819256_819568_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|820012_820963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	996822	1099215	4103277	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996822_997938_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998038_998857_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998954_999566_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999725_1001102_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001164_1001623_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001707_1002403_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002464_1002746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003308_1004061_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004105_1005182_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005178_1006129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006231_1006894_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006988_1007159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007511_1008513_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008515_1009712_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009732_1010536_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010616_1010913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010943_1011507_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011547_1012405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012412_1013162_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013183_1014056_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014084_1014864_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014897_1015695_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018349_1018742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018735_1019596_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019599_1020562_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021338_1022028_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022888_1023839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024188_1025058_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025128_1025824_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025813_1026323_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026319_1027540_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027487_1028390_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|1029276_1030563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030601_1031975_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1032013_1032715_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1033013_1034003_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034103_1034565_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034580_1035129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035270_1036746_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036851_1037943_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037946_1038729_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038738_1039527_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040652_1041087_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041083_1042094_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042137_1043064_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043350_1043719_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043935_1044886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044930_1047357_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047405_1048098_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048170_1049370_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049387_1050293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050408_1051338_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051363_1052710_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052722_1053487_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053500_1054283_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054475_1055426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055487_1056597_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057109_1057946_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058072_1058981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058977_1059928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060313_1060856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061891_1062842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063083_1063452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063497_1064622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065756_1066497_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066600_1067221_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067324_1068275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068271_1070380_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070524_1071184_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071215_1071680_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071955_1072141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072192_1072945_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072951_1074214_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074255_1075494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076571_1077699_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077709_1078537_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078523_1079390_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080756_1081161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081252_1082203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082572_1083484_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083498_1084209_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084205_1085450_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085451_1085886_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085914_1086220_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086318_1087269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087325_1088474_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088554_1089505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090036_1090834_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090881_1091535_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091491_1092580_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092744_1094970_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097247_1098144_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098264_1099215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1129601	1200572	4103277	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129601_1130552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130608_1131721_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134104_1135055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135645_1136422_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136539_1136803_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136903_1137908_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138108_1139710_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139735_1140494_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140585_1141242_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141332_1142097_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142106_1142295_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142350_1143394_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143390_1143804_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143800_1144421_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010929591.1|1144701_1145652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145819_1147211_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147283_1147862_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147978_1149376_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149491_1150697_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150796_1151315_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151409_1151655_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151882_1152197_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152295_1157476_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157472_1159641_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159696_1162012_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1162016_1163336_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163354_1165028_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165032_1165701_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165857_1169679_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1170009_1170960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170981_1172127_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172275_1173205_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173201_1174290_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174286_1175090_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175086_1175818_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175875_1177165_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177261_1177864_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182417_1182756_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183463_1183730_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185436_1186387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186383_1187715_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188975_1190976_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190968_1191610_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191606_1192014_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1192010_1192811_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192885_1193590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193621_1194416_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194412_1195363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195461_1196412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196510_1196945_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197027_1199364_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199555_1200572_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1247966	1328841	4103277	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247966_1248917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248913_1249864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250124_1251153_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251232_1252531_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252527_1253109_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253421_1257468_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257708_1265370_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265366_1266317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267456_1267930_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268069_1268690_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268825_1269626_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269680_1270772_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270793_1271237_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271265_1271898_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1272008_1272425_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272417_1273110_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273216_1273591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273667_1274477_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274572_1275517_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275555_1276527_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276617_1277055_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277113_1277995_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278998_1279859_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279891_1281274_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281270_1282290_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282662_1283157_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283164_1283905_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283985_1285590_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285629_1286418_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286543_1288709_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289589_1290402_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290414_1290723_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290840_1292571_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292572_1293775_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293847_1294516_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294637_1295105_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295240_1296623_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296619_1297744_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297740_1300377_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300792_1301743_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305489_1306101_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306323_1307784_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307880_1309473_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309826_1310084_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310085_1311426_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311521_1312211_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312223_1313654_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315378_1316200_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316210_1317782_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317810_1318788_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318814_1319618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319614_1320409_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320416_1321652_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321665_1322079_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322828_1323779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324400_1326128_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326239_1327598_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327890_1328841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1448236	1500389	4103277	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1448236_1449187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449353_1449707_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449719_1450082_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450123_1450549_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450751_1452008_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452206_1453187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453336_1454578_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454676_1455627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455635_1456331_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459152_1459752_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459762_1461928_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461951_1463736_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463735_1463825_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464519_1464792_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464791_1466858_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466854_1467805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467903_1468854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468969_1469302_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469298_1469985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469971_1470931_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470963_1473333_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473332_1473965_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474066_1475407_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475453_1476809_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477099_1477336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477523_1477841_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478113_1478629_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478899_1479655_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479993_1480200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480207_1480867_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481161_1483366_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483476_1484700_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484822_1485797_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485864_1487058_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487072_1487873_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487869_1489726_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489722_1490328_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490346_1491732_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492457_1493684_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493772_1494555_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494653_1495604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495630_1496404_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496415_1497657_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499438_1500389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1544314	1612401	4103277	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1544314_1544803_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544920_1545499_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545604_1545973_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546071_1547022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547028_1548141_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548827_1550030_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550233_1552894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552906_1556311_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556978_1559204_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559250_1559577_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559627_1560236_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560334_1561285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561354_1562119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562115_1562652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562818_1563670_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563729_1564356_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564352_1565303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565401_1566514_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566503_1567505_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567610_1569122_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569118_1570423_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570534_1571095_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571362_1571917_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572372_1572588_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572842_1575440_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575436_1576624_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577283_1577898_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577986_1579108_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579125_1580031_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580923_1581874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582055_1582808_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582876_1583536_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583532_1584261_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584273_1586553_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586577_1586781_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586822_1587455_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587590_1588508_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588504_1589218_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589455_1590226_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590230_1590830_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591074_1592565_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592623_1592908_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593473_1594400_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594536_1595277_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595443_1596820_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1597001_1597907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599558_1601361_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601478_1602129_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602227_1603178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603199_1604420_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604605_1606018_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606081_1607149_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607148_1608636_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608645_1609590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609749_1610448_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610525_1611431_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611450_1612401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1648350	1703941	4103277	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648350_1649301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649359_1650133_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650125_1651682_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651678_1652629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653955_1654558_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654797_1655499_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655492_1656275_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656459_1657410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657508_1658246_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658435_1659194_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659240_1660230_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660407_1661376_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662915_1663884_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663892_1664834_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665307_1666318_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666308_1667823_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667819_1669166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1669168_1670203_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670252_1671878_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672430_1673381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673485_1674433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674486_1676301_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676293_1676968_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677097_1680172_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680185_1680485_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680799_1681423_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1681666_1682536_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682513_1683458_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683543_1684470_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684582_1685362_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685352_1686549_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686579_1687530_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687751_1688441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688505_1689261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689312_1690305_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690314_1691268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691383_1692346_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693747_1694176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694172_1695123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1695416_1696139_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696577_1697765_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1697768_1698119_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699868_1700840_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700853_1701567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701571_1702489_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702595_1702892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702990_1703941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	1936705	2006357	4103277	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936705_1939363_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939440_1940643_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940639_1941152_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941274_1941712_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941988_1942939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943037_1943988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1944151_1946047_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1946160_1946328_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946391_1946628_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1946996_1948148_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949711_1950662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951113_1952115_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952287_1953145_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953141_1954404_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954504_1954879_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1954951_1956139_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956223_1956994_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957107_1957872_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957822_1959124_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1959120_1959927_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1961671_1962643_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962799_1963312_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963470_1964445_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965445_1966240_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966265_1967072_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967182_1967773_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967783_1968962_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969064_1969439_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969691_1971023_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971089_1974320_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975810_1976557_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976641_1977103_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977140_1978199_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978161_1979991_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980030_1980603_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982027_1982849_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983167_1984490_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984849_1985485_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985444_1986395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987265_1988138_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988215_1989355_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989713_1990970_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990975_1991503_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991507_1992326_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992325_1993048_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993069_1993384_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993401_1994550_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994580_1995456_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995452_1996772_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996844_1998041_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998051_1999539_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002133_2003033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003170_2004136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004234_2005185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005406_2006357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2017853	2067249	4103277	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2017853_2018804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019941_2020238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077082173.1|2020412_2021765_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	1.1e-44
WP_010930153.1|2021907_2022924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024903_2025917_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2026003_2026909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027065_2027410_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027567_2028026_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028039_2030256_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030252_2031314_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031342_2032317_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032268_2033087_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033099_2033708_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2033882_2034278_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034296_2035736_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035764_2036112_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036130_2037081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037733_2038684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038767_2040585_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040658_2041306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041318_2042248_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042417_2042882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043129_2043810_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043858_2045550_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045565_2046117_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046113_2046485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046597_2047434_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047444_2047969_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048066_2048246_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048375_2049350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049480_2049837_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049826_2050702_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050800_2051685_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051706_2053002_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053950_2054601_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054688_2056209_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056466_2058332_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059377_2060328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060345_2060486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061300_2061660_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061647_2063084_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063080_2063734_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063730_2064924_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065027_2066302_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066298_2067249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2078453	2119144	4103277	protease,tRNA,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2078453_2079404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079502_2080453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080412_2080826_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081110_2081410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081819_2084102_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084567_2084762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2084787_2086818_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086837_2087050_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087327_2087867_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087980_2089276_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089352_2090510_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090693_2091593_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091611_2092916_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092881_2093988_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094075_2094312_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094450_2095521_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095524_2096880_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096906_2098064_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098069_2098708_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098709_2100005_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2100054_2101341_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101356_2101863_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101859_2103008_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103035_2103461_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103783_2106666_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106758_2107514_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108279_2109629_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109727_2110678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110776_2111727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111800_2112274_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112299_2113508_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113504_2114278_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114277_2114901_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115066_2115327_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115630_2116212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116278_2116533_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116519_2119144_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2146927	2212476	4103277	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146927_2147878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148078_2148888_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2149012_2149963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149959_2150853_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150977_2151172_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151171_2151513_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151522_2153385_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153514_2154027_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2154029_2154353_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154354_2154765_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154802_2156014_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2156031_2156544_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156759_2157251_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157503_2159540_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159617_2160820_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160948_2161599_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163156_2164107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164677_2164890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164907_2165639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165673_2166315_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166307_2166976_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169188_2169965_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169986_2171144_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171140_2171572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171568_2172366_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172385_2172787_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172853_2173825_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173890_2175114_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175341_2176292_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176415_2178869_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179057_2180362_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180466_2181120_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181122_2182433_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182611_2183190_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183301_2183502_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183847_2184414_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184497_2184701_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2185007_2185328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185369_2185651_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185725_2186982_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187364_2187694_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189264_2190086_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190085_2191225_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191231_2192128_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192142_2194050_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194409_2197022_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197074_2199375_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199371_2200580_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200841_2201216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201212_2202163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202261_2204256_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204315_2205281_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205270_2208132_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208134_2208641_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208745_2209954_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209955_2210894_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211055_2211529_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211525_2212476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2506123	2564367	4103277	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506123_2507074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507553_2508210_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508224_2509892_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509894_2510524_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510735_2511830_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511974_2512787_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512790_2514374_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514544_2515675_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515861_2516938_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517019_2517670_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517684_2519088_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519371_2520190_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520186_2520891_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521790_2522906_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522939_2523314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523336_2524494_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524506_2524740_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525374_2528344_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528358_2528568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528719_2529349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529345_2531403_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531459_2532140_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532136_2532697_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532703_2533801_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533953_2534547_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534543_2535836_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535849_2536392_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536401_2537238_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537271_2538333_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538374_2539427_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539442_2539745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539886_2540837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2541015_2542710_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542706_2543792_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543839_2544739_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544749_2545394_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546415_2549658_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549668_2550823_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551049_2552012_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552110_2553061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553159_2554110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554119_2554809_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554868_2555306_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555351_2556245_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556292_2557465_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557461_2558616_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558812_2559163_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559152_2559587_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559603_2560554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560701_2561169_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561149_2562307_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562372_2563299_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563416_2564367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2606647	2673147	4103277	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606647_2607598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607967_2608540_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608542_2609553_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609545_2610046_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610056_2610398_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610466_2611201_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611217_2611487_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611509_2612298_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612344_2613361_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613577_2615020_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615198_2616818_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616938_2618759_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618837_2620370_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620403_2622050_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622119_2623142_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623159_2624293_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624295_2624985_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624984_2625770_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625813_2626578_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626616_2628038_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628103_2628808_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628855_2629275_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629287_2629695_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629878_2630589_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630715_2631006_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631023_2631506_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2636011_2637166_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637471_2638488_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638734_2639523_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639589_2640270_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640266_2641037_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641135_2642086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642141_2643059_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643069_2644248_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644267_2645263_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646851_2647460_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647447_2648488_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648505_2649468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649464_2650658_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650654_2651452_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651477_2652464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652482_2654522_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654723_2655404_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655417_2656329_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656325_2656904_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657042_2657948_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657955_2661375_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661362_2663963_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664918_2665551_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665944_2666703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666699_2667902_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668089_2669040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669947_2671093_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671079_2671835_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671951_2672131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672196_2673147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	2855550	3006150	4103277	tRNA,holin,transposase	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|2855550_2856501_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856599_2857481_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857558_2858938_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858976_2859822_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859837_2860152_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860184_2860721_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860893_2861469_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861571_2862309_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862376_2864014_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864121_2864877_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864864_2865827_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865934_2866729_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866790_2868866_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2869030_2871406_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871486_2872842_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874320_2875043_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875097_2876081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876210_2877161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877157_2878060_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878147_2878906_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878918_2880010_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880107_2881535_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881764_2882979_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883024_2885895_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888305_2888794_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888919_2891616_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891770_2894053_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894218_2894851_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894949_2895900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895946_2896501_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896568_2897414_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897483_2898452_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898451_2900248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2902147_2906074_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2906809_2910040_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910321_2911149_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911182_2911878_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2911870_2913151_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913160_2914138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914119_2915820_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2915922_2917026_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917056_2917812_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2917818_2919339_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919381_2919684_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919680_2920313_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920391_2922257_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922253_2923048_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_077082181.1|2923076_2924192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925096_2925975_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925974_2926799_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926966_2927917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928129_2930979_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930960_2931689_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931829_2933293_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933289_2933661_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933678_2934992_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935028_2935487_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935599_2936550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936546_2937560_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937699_2938686_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939044_2939752_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940332_2941283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941434_2942037_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942055_2942688_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942732_2942984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942925_2944812_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944830_2945673_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945669_2947028_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947248_2948043_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948273_2949767_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2950002_2952084_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952278_2953319_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953453_2954470_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954491_2955349_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955393_2956170_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2956537_2957488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957514_2957979_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959185_2961474_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961590_2962463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962505_2963660_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963694_2964525_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964608_2966153_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966195_2966555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966556_2966970_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967010_2967328_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967412_2968129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968392_2969814_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969880_2972628_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972960_2973977_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974312_2974954_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975044_2976481_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976638_2977712_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977708_2978845_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2978989_2979334_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979400_2981281_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981330_2982266_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2982598_2983615_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984552_2985980_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985976_2986999_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986988_2987462_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987602_2988490_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988486_2990130_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2990126_2991134_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991964_2992981_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993080_2993713_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993721_2994111_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994163_2995216_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996079_2997786_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997859_2998360_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998374_3000432_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000458_3000752_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000853_3001801_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001813_3002689_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002809_3003370_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003404_3003728_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004163_3004901_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005199_3006150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	3027101	3099595	4103277	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3027101_3028052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028094_3029270_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029491_3031282_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031294_3032956_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032968_3035674_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035966_3037721_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037717_3038344_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038340_3039192_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3039321_3041382_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041568_3042183_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042328_3042580_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042649_3044032_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044028_3047208_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3048015_3048933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048984_3049716_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049775_3050348_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051856_3052873_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3053010_3054060_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054164_3055115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055210_3055936_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056146_3056527_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3056832_3057705_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3057712_3058093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058246_3059521_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3061008_3061917_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3062714_3063779_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3065615_3066650_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3066839_3067481_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067563_3069390_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3069633_3070563_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070562_3071312_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071383_3072298_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072317_3073463_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073523_3074435_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074515_3075466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075564_3076149_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076183_3077173_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077169_3078111_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078107_3079328_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079370_3079685_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079876_3080236_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080237_3081953_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082140_3082812_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082826_3084155_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084151_3085051_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085137_3086223_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3086215_3087346_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3087348_3090030_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090400_3090982_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091107_3091833_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091829_3092507_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092722_3093904_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094676_3094859_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094888_3095839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095968_3096361_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096637_3097549_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097673_3098648_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098644_3099595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	3231078	3300081	4103277	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3231078_3232029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232025_3233045_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233054_3235763_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235910_3236567_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236665_3237616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237763_3238657_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238856_3240551_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240585_3241512_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241580_3242678_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242696_3243560_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243571_3244354_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244350_3245469_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245465_3246998_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247038_3248046_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248190_3248913_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248928_3249951_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250267_3251002_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251086_3252832_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252828_3253581_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253625_3254582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254670_3255237_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255244_3256105_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256134_3256863_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256894_3257578_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258415_3259330_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259394_3260303_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260393_3261818_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261819_3263142_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263138_3265277_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265354_3270475_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270575_3270884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270953_3271511_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271526_3273008_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3273062_3274916_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3275178_3276516_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276550_3278548_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278565_3280614_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280744_3281611_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281879_3282845_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282959_3284108_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3284532_3284844_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284877_3285138_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285287_3286421_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286491_3287628_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287793_3288588_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288650_3289094_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289209_3290160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3290282_3290690_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3290762_3292958_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293179_3294130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294089_3294614_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294745_3295717_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295836_3298281_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298296_3298887_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299130_3300081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	3315527	3415640	4103277	protease,transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3315527_3316478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317209_3317587_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317571_3318273_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318416_3319109_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319108_3320212_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320321_3322694_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322690_3324250_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324274_3325072_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325103_3326249_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326353_3327796_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327798_3329028_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331165_3332116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333245_3333803_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333778_3334129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334297_3335092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335088_3336138_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336137_3336827_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336913_3337411_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337442_3338759_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338775_3339750_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339786_3340245_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340244_3340925_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340927_3341356_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341408_3343139_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343204_3343777_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343757_3344444_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344799_3345471_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345799_3346021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346020_3346302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346298_3346814_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346813_3347365_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347343_3347586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347590_3348403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348402_3348666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348706_3348904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348884_3349301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349305_3353262_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353254_3353644_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353640_3354174_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354241_3354601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354610_3357223_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357248_3357539_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357556_3357886_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357895_3358414_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358668_3359169_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359176_3359599_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359595_3359994_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359990_3360386_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3360385_3360574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360587_3361070_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361132_3361384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362058_3363009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363437_3364040_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364162_3364405_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364410_3365466_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365494_3366913_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366915_3368193_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368179_3368665_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369304_3370255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370511_3371201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371193_3371445_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3371999_3372611_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372682_3372889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373140_3374091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374189_3375263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375430_3376225_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376264_3376789_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3376781_3378524_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3378733_3379492_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379494_3380202_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380218_3381100_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381110_3381869_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3381837_3382593_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3382662_3384081_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384102_3384753_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3384886_3385222_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385310_3386261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386337_3388158_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388162_3389236_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389358_3390327_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390400_3391312_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391330_3391903_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3391983_3392532_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392531_3394121_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394190_3394430_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394470_3395496_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395561_3396743_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3396839_3397292_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397301_3398642_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3398958_3399996_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400377_3400737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3400820_3401762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3401836_3402787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403080_3404175_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3404265_3405138_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405159_3405999_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406074_3407592_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3407688_3408789_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3408805_3409228_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3409250_3409463_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409509_3410430_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3410612_3411362_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411364_3411694_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3411981_3413334_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3413345_3413729_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3413790_3414591_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3414689_3415640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011687	Bordetella pertussis strain C505 chromosome, complete genome	4103277	4002345	4067257	4103277	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4002345_4002831_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002919_4003057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003049_4004030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004296_4005106_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005145_4005826_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005819_4006278_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006289_4006652_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006734_4007418_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007473_4007782_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007800_4008115_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008111_4010586_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010593_4011985_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011981_4012167_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012145_4012847_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012843_4013665_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013645_4014770_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014762_4015782_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015987_4016878_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017122_4017914_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017996_4018371_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018348_4019758_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019750_4021133_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021467_4023072_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023149_4024121_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024131_4025058_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025448_4026399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026568_4027795_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027994_4028861_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028853_4029816_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029916_4030867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030965_4031916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032014_4032965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032961_4034455_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034451_4037559_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037555_4040624_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040620_4041871_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042051_4042804_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042845_4043490_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043498_4044479_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044578_4045322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045404_4045752_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045849_4046692_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046736_4047624_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047650_4047839_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047936_4049394_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049380_4050907_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050925_4051393_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051392_4052415_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052535_4053276_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053330_4054431_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054432_4055623_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055742_4056759_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057077_4057749_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057745_4058654_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058865_4059513_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063373_4064441_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064451_4065261_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065350_4066124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066306_4067257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
