The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	27282	70036	4104176	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	77634	136108	4104176	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	164893	225404	4104176	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	233336	286924	4104176	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	468501	585347	4104176	transposase,tRNA	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|468501_469452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470174_471449_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471535_472618_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472628_473441_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473477_473804_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473808_474369_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474609_475602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475620_476616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476631_478008_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478000_480382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480398_480788_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480914_481145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481249_482200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482298_483249_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483245_484118_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485048_486335_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486388_487315_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487333_487789_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488640_489432_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489463_490084_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490080_490710_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490722_491331_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491327_492317_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492422_493637_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495588_496539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497972_499259_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|499424_499733_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|499754_500399_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|500439_502230_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502342_503203_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|503199_504405_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504401_505286_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506802_507237_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507199_508198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508309_509455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509529_510858_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510891_511482_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511771_512566_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513735_514470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514476_515343_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515350_517126_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517168_517666_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517962_518913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519011_519962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520302_521253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523576_524725_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|524769_525393_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525545_526538_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526534_527272_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|527351_528173_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528261_529125_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529251_529488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531462_532497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|532555_533533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533540_534461_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534457_536158_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536160_537066_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537109_538243_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538371_539322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539420_541490_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541532_543635_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543941_545018_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545093_545978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546160_546583_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546592_547993_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548035_548941_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549039_550581_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550615_551155_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551167_551638_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551775_552018_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552134_553016_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553088_553409_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|554260_555211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556534_557311_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557345_559118_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559119_560022_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560146_560506_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560537_561500_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561598_562549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562561_563497_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563556_564396_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564392_565562_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565558_566848_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566890_567265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|567379_568108_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568115_568820_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569083_570604_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570659_571223_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571241_572273_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572269_573058_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|573233_574223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575979_576930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578152_579055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579056_579911_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579957_581067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581077_581596_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581625_582258_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582329_582989_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|582985_584125_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584474_585347_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	589761	653594	4104176	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|589761_590778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591049_591676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|591731_592859_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592864_598582_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599149_600094_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600282_601218_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601335_602907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602986_604195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604692_605610_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607970_608192_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608522_609539_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609623_609875_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609878_610694_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610806_611685_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611796_613560_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613675_615016_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616085_617510_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617509_618211_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619715_620666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620761_621733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621737_622418_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622555_622948_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623055_624072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624311_625097_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625191_626601_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626611_627412_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627432_628203_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|628245_628713_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628709_629660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|631608_632487_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|633413_636392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|636745_637696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|637692_638781_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|638816_639680_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|640819_641209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|641212_641995_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|642028_642814_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|643089_644229_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|644225_645017_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|645013_645763_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|645759_646632_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|646631_647633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|647629_648793_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|648818_649502_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|649455_650790_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|650782_651877_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|652643_653594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	672505	749814	4104176	transposase,protease,integrase,tRNA	Bacillus_phage(20.0%)	58	719642:719660	739530:739548
WP_023995489.1|672505_673456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|673554_675030_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|676617_677505_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|677507_678449_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|678494_680060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|681837_683163_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|683345_684803_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|684766_685264_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|685294_686266_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|686318_686750_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|686879_687548_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|688276_689380_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|689485_690760_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|690771_691797_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|691798_693169_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|693169_694306_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|694352_696278_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|696274_697396_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|697392_698547_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|698543_699674_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|699681_701247_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|701253_702636_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|702914_703526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|703617_705033_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|705050_705761_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|705757_707080_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|707159_709121_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|709246_710560_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|710668_711967_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|712149_713058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|713067_713277_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|713288_714968_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|715069_716023_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|716113_716941_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|716939_718826_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|718822_719422_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|719470_720370_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719642:719660	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|720578_721529_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|721651_722266_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|722394_722991_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|722987_723770_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|723842_724934_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|725213_726341_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|726682_727729_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|728239_730996_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|730997_733949_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|733964_735176_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|735172_735373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|735359_736310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|736326_736821_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|736824_737082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|737625_738537_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|738618_738903_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|739686_740637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
739530:739548	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|741055_743620_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|743664_745518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|745850_747422_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|748863_749814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	995748	1098141	4104176	transposase,tRNA	Bacillus_virus(27.27%)	95	NA	NA
WP_003813026.1|995748_996864_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|996964_997783_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|997880_998492_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|998651_1000028_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1000090_1000549_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1000633_1001329_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1001390_1001672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1002234_1002987_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1003031_1004108_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1004104_1005055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005157_1005820_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005914_1006085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006437_1007439_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007441_1008638_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008658_1009462_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1009542_1009839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009869_1010433_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010473_1011331_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011338_1012088_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012109_1012982_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1013010_1013790_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013823_1014621_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017275_1017668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017661_1018522_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018525_1019488_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020264_1020954_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021814_1022765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023114_1023984_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024054_1024750_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024739_1025249_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025245_1026466_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026413_1027316_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028202_1029489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029527_1030901_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030939_1031641_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031939_1032929_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033029_1033491_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033506_1034055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1034196_1035672_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035777_1036869_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036872_1037655_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037664_1038453_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039578_1040013_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1040009_1041020_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041063_1041990_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042276_1042645_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1042861_1043812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043856_1046283_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046331_1047024_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047096_1048296_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048313_1049219_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049334_1050264_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050289_1051636_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1051648_1052413_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1052426_1053209_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053401_1054352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054413_1055523_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056035_1056872_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1056998_1057907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057903_1058854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1058871_1059042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1059239_1059782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060817_1061768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1062009_1062378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062423_1063548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1064682_1065423_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065526_1066147_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066250_1067201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067197_1069306_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069450_1070110_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070141_1070606_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070881_1071067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071118_1071871_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071877_1073140_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073181_1074420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075497_1076625_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076635_1077463_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077449_1078316_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079682_1080087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080178_1081129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1081146_1081311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1081498_1082410_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082424_1083135_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083131_1084376_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084377_1084812_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084840_1085146_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085244_1086195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1086251_1087400_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087480_1088431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088962_1089760_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089807_1090461_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090417_1091506_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091670_1093896_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096173_1097070_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1097190_1098141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1128527	1199498	4104176	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1128527_1129478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129534_1130647_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133030_1133981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134571_1135348_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135465_1135729_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135829_1136834_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137034_1138636_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138661_1139420_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139511_1140168_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140258_1141023_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141032_1141221_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141276_1142320_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142316_1142730_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142726_1143347_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143627_1144578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144745_1146137_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146209_1146788_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146904_1148302_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148417_1149623_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149722_1150241_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150335_1150581_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150808_1151123_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1151221_1156402_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156398_1158567_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158622_1160938_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160942_1162262_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162280_1163954_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163958_1164627_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164783_1168605_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1168935_1169886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169907_1171053_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171201_1172131_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172127_1173216_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173212_1174016_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1174012_1174744_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174801_1176091_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176187_1176790_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181343_1181682_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182389_1182656_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184362_1185313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185309_1186641_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187901_1189902_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189894_1190536_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190532_1190940_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190936_1191737_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191811_1192516_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192547_1193342_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193338_1194289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1194387_1195338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195436_1195871_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195953_1198290_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198481_1199498_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1246892	1327767	4104176	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1246892_1247843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247839_1248790_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249050_1250079_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250158_1251457_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251453_1252035_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252347_1256394_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256634_1264296_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264292_1265243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266382_1266856_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266995_1267616_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1267751_1268552_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268606_1269698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1269719_1270163_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270191_1270824_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270934_1271351_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271343_1272036_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272142_1272517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1272593_1273403_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273498_1274443_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274481_1275453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275543_1275981_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276039_1276921_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277924_1278785_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278817_1280200_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280196_1281216_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281588_1282083_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282090_1282831_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282911_1284516_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284555_1285344_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1285469_1287635_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1288515_1289328_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289340_1289649_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289766_1291497_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1291498_1292701_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1292773_1293442_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293563_1294031_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294166_1295549_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295545_1296670_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296666_1299303_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299718_1300669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304415_1305027_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305249_1306710_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306806_1308399_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308752_1309010_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309011_1310352_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310447_1311137_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311149_1312580_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314304_1315126_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315136_1316708_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316736_1317714_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317740_1318544_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318540_1319335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319342_1320578_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1320591_1321005_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321754_1322705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1323326_1325054_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1325165_1326524_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1326816_1327767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1447162	1499315	4104176	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1447162_1448113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1448279_1448633_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448645_1449008_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449049_1449475_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449677_1450934_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451132_1452113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452262_1453504_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1453602_1454553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454561_1455257_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458078_1458678_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458688_1460854_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460877_1462662_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462661_1462751_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463445_1463718_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463717_1465784_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465780_1466731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467895_1468228_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468224_1468911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468897_1469857_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469889_1472259_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472258_1472891_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472992_1474333_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474379_1475735_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476025_1476262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476449_1476767_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477039_1477555_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1477825_1478581_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478919_1479126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479133_1479793_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480087_1482292_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482402_1483626_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483748_1484723_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484790_1485984_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485998_1486799_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486795_1488652_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488648_1489254_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489272_1490658_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491383_1492610_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492698_1493481_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493579_1494530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494556_1495330_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495341_1496583_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498364_1499315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1543240	1611326	4104176	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1543240_1543729_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543846_1544425_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544530_1544899_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544997_1545948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545954_1547067_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547753_1548956_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1549159_1551820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1551832_1555237_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555904_1558130_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558176_1558503_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558553_1559162_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559260_1560211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560280_1561045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1561041_1561578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561744_1562596_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562655_1563282_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563278_1564229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564327_1565440_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565429_1566431_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566536_1568048_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568044_1569349_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569460_1570021_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570288_1570843_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571298_1571514_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571768_1574366_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574362_1575550_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1576208_1576823_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1576911_1578033_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578050_1578956_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579848_1580799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580980_1581733_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581801_1582461_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582457_1583186_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583198_1585478_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585502_1585706_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585747_1586380_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586515_1587433_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587429_1588143_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588380_1589151_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589155_1589755_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1589999_1591490_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591548_1591833_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1592398_1593325_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593461_1594202_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594368_1595745_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595926_1596832_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598483_1600286_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1600403_1601054_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601152_1602103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602124_1603345_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603530_1604943_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1605006_1606074_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606073_1607561_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607570_1608515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608674_1609373_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609450_1610356_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610375_1611326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1647275	1702866	4104176	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1647275_1648226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648284_1649058_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649050_1650607_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650603_1651554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652880_1653483_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653722_1654424_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654417_1655200_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655384_1656335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656433_1657171_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657360_1658119_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658165_1659155_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659332_1660301_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661840_1662809_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662817_1663759_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664232_1665243_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665233_1666748_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666744_1668091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1668093_1669128_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669177_1670803_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671355_1672306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672410_1673358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673411_1675226_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675218_1675893_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1676022_1679097_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679110_1679410_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679724_1680348_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1680591_1681461_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681438_1682383_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682468_1683395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683507_1684287_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684277_1685474_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685504_1686455_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686676_1687366_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687430_1688186_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688237_1689230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689239_1690193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690308_1691271_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692672_1693101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693097_1694048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1694341_1695064_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695502_1696690_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1696693_1697044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698793_1699765_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699778_1700492_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700496_1701414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701520_1701817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701915_1702866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	1935630	2005282	4104176	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935630_1938288_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938365_1939568_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939564_1940077_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940199_1940637_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940913_1941864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941962_1942913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1943076_1944972_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1945085_1945253_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945316_1945553_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1945921_1947073_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948636_1949587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1950038_1951040_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951212_1952070_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952066_1953329_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953429_1953804_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1953876_1955064_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955148_1955919_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1956032_1956797_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956747_1958049_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1958045_1958852_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1960596_1961568_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961724_1962237_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962395_1963370_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964370_1965165_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965190_1965997_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966107_1966698_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966708_1967887_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967989_1968364_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968616_1969948_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1970014_1973245_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974735_1975482_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975566_1976028_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976065_1977124_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977086_1978916_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978955_1979528_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980952_1981774_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982092_1983415_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983774_1984410_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984369_1985320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986190_1987063_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987140_1988280_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988638_1989895_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989900_1990428_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990432_1991251_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991250_1991973_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991994_1992309_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992326_1993475_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993505_1994381_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994377_1995697_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995769_1996966_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996976_1998464_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2001058_2001958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002095_2003061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003159_2004110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004331_2005282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2016778	2066174	4104176	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2016778_2017729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018866_2019163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019337_2020690_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020832_2021849_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023828_2024842_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2024928_2025834_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025990_2026335_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026492_2026951_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026964_2029181_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029177_2030239_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030267_2031242_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031193_2032012_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2032024_2032633_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2032807_2033203_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033221_2034661_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034689_2035037_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035055_2036006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036658_2037609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037692_2039510_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039583_2040231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040243_2041173_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041342_2041807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2042054_2042735_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042783_2044475_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044490_2045042_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2045038_2045410_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045522_2046359_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046369_2046894_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2046991_2047171_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047300_2048275_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048405_2048762_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048751_2049627_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049725_2050610_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050631_2051927_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052875_2053526_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2053613_2055134_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2055391_2057257_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058302_2059253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059270_2059411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060225_2060585_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060572_2062009_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062005_2062659_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062655_2063849_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063952_2065227_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065223_2066174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2077378	2118069	4104176	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2077378_2078329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078427_2079378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079337_2079751_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080035_2080335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080744_2083027_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2083492_2083687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2083712_2085743_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085762_2085975_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086252_2086792_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086905_2088201_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088277_2089435_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089618_2090518_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090536_2091841_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091806_2092913_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2093000_2093237_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093375_2094446_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094449_2095805_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2095831_2096989_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096994_2097633_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2097634_2098930_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2098979_2100266_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100281_2100788_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100784_2101933_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101960_2102386_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102708_2105591_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105683_2106439_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107204_2108554_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108652_2109603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109701_2110652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110725_2111199_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111224_2112433_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112429_2113203_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113202_2113826_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2113991_2114252_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114555_2115137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115203_2115458_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115444_2118069_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2145852	2211401	4104176	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145852_2146803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147003_2147813_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2147937_2148888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148884_2149778_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149902_2150097_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150096_2150438_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150447_2152310_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152439_2152952_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152954_2153278_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153279_2153690_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153727_2154939_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154956_2155469_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155684_2156176_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156428_2158465_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158542_2159745_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159873_2160524_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2162081_2163032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163602_2163815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163832_2164564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164598_2165240_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165232_2165901_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168113_2168890_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168911_2170069_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170065_2170497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2170493_2171291_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171310_2171712_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171778_2172750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172815_2174039_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174266_2175217_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175340_2177794_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177982_2179287_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179391_2180045_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180047_2181358_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2181536_2182115_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182226_2182427_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182772_2183339_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183422_2183626_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183932_2184253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184294_2184576_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184650_2185907_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186289_2186619_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188189_2189011_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189010_2190150_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190156_2191053_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2191067_2192975_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193334_2195947_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2195999_2198300_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198296_2199505_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2199766_2200141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200137_2201088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201186_2203181_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203240_2204206_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204195_2207057_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207059_2207566_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207670_2208879_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208880_2209819_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209980_2210454_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210450_2211401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2505048	2563292	4104176	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2505048_2505999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506478_2507135_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507149_2508817_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508819_2509449_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509660_2510755_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510899_2511712_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2511715_2513299_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2513469_2514600_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514786_2515863_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515944_2516595_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516609_2518013_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518296_2519115_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519111_2519816_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520715_2521831_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521864_2522239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522261_2523419_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523431_2523665_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524299_2527269_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527283_2527493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527644_2528274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528270_2530328_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530384_2531065_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531061_2531622_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531628_2532726_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532878_2533472_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533468_2534761_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534774_2535317_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535326_2536163_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536196_2537258_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537299_2538352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538367_2538670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538811_2539762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2539779_2539944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2539940_2541635_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541631_2542717_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542764_2543664_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543674_2544319_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545340_2548583_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548593_2549748_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549974_2550937_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2551035_2551986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2552084_2553035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2553044_2553734_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2553793_2554231_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554276_2555170_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555217_2556390_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556386_2557541_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2557737_2558088_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2558077_2558512_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2558528_2559479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559626_2560094_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2560074_2561232_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561297_2562224_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562341_2563292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2605572	2672072	4104176	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605572_2606523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606892_2607465_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607467_2608478_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608470_2608971_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608981_2609323_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609391_2610126_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610142_2610412_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610434_2611223_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611269_2612286_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612502_2613945_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614123_2615743_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615863_2617684_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617762_2619295_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619328_2620975_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621044_2622067_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622084_2623218_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623220_2623910_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623909_2624695_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624738_2625503_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625541_2626963_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627028_2627733_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627780_2628200_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628212_2628620_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628803_2629514_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629640_2629931_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629948_2630431_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634936_2636091_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636396_2637413_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637659_2638448_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638514_2639195_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639191_2639962_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640060_2641011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641066_2641984_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641994_2643173_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643192_2644188_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645776_2646385_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646372_2647413_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647430_2648393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648389_2649583_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649579_2650377_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650402_2651389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651407_2653447_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653648_2654329_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654342_2655254_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655250_2655829_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655967_2656873_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656880_2660300_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660287_2662888_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663843_2664476_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664869_2665628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665624_2666827_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667014_2667965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668872_2670018_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670004_2670760_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670876_2671056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671121_2672072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2834637	2900222	4104176	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834637_2835588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835686_2836637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2836839_2837829_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837912_2838266_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838343_2838952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840625_2841204_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841228_2842182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842221_2843139_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843260_2844187_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844194_2844941_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845267_2846209_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846435_2848133_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848567_2849989_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850142_2850922_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2851046_2851925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2852030_2853155_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2853200_2854163_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2854155_2855010_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855117_2855528_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855524_2856475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856573_2857455_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857532_2858912_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858950_2859796_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859811_2860126_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860158_2860695_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860867_2861443_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861545_2862283_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862350_2863988_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864095_2864851_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864838_2865801_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865908_2866703_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866764_2868840_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2869004_2871380_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871460_2872816_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874294_2875017_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875071_2876055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2876184_2877135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877131_2878034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878121_2878880_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878892_2879984_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880081_2881509_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881738_2882953_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2882998_2885869_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888279_2888768_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888893_2891590_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891744_2894027_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894192_2894825_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894923_2895874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895920_2896475_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896542_2897388_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897457_2898426_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898425_2900222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2917792	2977686	4104176	transposase,holin,tRNA	Catovirus(22.22%)	51	NA	NA
WP_010930190.1|2917792_2919313_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919355_2919658_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919654_2920287_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920365_2922231_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922227_2923022_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923050_2924166_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925070_2925949_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925948_2926773_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926940_2927891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928103_2930953_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930934_2931663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931803_2933267_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933263_2933635_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933652_2934966_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935002_2935461_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935573_2936524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936520_2937534_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937673_2938660_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939018_2939726_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940306_2941257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941408_2942011_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942029_2942662_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942706_2942958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942899_2944786_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944804_2945647_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945643_2947002_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947222_2948017_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948247_2949741_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949976_2952058_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952252_2953293_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953427_2954444_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954465_2955323_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955367_2956144_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2956356_2956494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2956511_2957462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957488_2957953_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959159_2961448_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961564_2962437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962479_2963634_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963668_2964499_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964582_2966127_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966169_2966529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966530_2966944_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966984_2967302_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967386_2968103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968366_2969788_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969854_2972602_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972934_2973951_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974286_2974928_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975018_2976455_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976612_2977686_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 23
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	2982572	3055089	4104176	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2982572_2983589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984526_2985954_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985950_2986973_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986962_2987436_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987576_2988464_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988460_2990104_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2990100_2991108_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991938_2992955_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993054_2993687_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993695_2994085_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994137_2995190_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996053_2997760_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997833_2998334_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998348_3000406_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000432_3000726_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000827_3001775_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001787_3002663_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002783_3003344_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003378_3003702_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004137_3004875_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005173_3006124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3006367_3006631_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3006704_3006986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3007002_3007863_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3007859_3008195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3008248_3008899_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3010579_3011524_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3011569_3011887_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3011889_3012828_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3013005_3013491_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3013509_3014058_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3014089_3014242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3015571_3016213_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3016367_3018716_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3018712_3019651_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3019676_3020867_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3020863_3021637_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3021666_3022860_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3022977_3023988_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3024005_3026042_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3026236_3026977_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3027075_3028026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028068_3029244_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029465_3031256_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031268_3032930_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032942_3035648_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035940_3037695_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037691_3038318_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038314_3039166_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3039295_3041356_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041542_3042157_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042302_3042554_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042623_3044006_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044002_3047182_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3047989_3048907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048958_3049690_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049749_3050322_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051830_3052847_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052984_3054034_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054138_3055089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	3074489	3139429	4104176	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3074489_3075440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075538_3076123_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076157_3077147_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077143_3078085_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078081_3079302_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079344_3079659_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079850_3080210_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080211_3081927_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082114_3082786_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082800_3084129_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084125_3085025_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085111_3086197_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3086189_3087320_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3087322_3090004_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090374_3090956_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091081_3091807_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091803_3092481_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092696_3093878_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094650_3094833_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094862_3095813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095942_3096335_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096611_3097523_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097647_3098622_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098618_3099569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3099667_3100753_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3100850_3101261_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3101876_3103790_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3103925_3106538_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3106539_3107274_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3107437_3108619_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3108615_3108828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3108824_3109805_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3109850_3110678_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3110827_3112642_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3112696_3113080_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3113076_3114027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114139_3114391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3114584_3114800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3114896_3116015_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116134_3116347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116506_3116728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3116780_3117731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3118907_3120278_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120310_3121102_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121114_3122170_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122195_3123071_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123176_3123425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123459_3124914_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3124910_3125432_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125460_3126813_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127036_3129925_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132069_3133371_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3133385_3134102_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134383_3135064_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3135591_3136251_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3136649_3138482_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138478_3139429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	3231052	3295153	4104176	transposase	Klosneuvirus(16.67%)	51	NA	NA
WP_041337087.1|3231052_3232003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3231999_3233019_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233028_3235737_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235884_3236541_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236639_3237590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237737_3238631_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238830_3240525_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240559_3241486_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241554_3242652_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242670_3243534_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243545_3244328_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244324_3245443_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245439_3246972_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247012_3248020_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248164_3248887_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248902_3249925_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250241_3250976_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251060_3252806_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252802_3253555_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253599_3254556_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254644_3255211_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255218_3256079_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256108_3256837_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256868_3257552_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258389_3259304_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259368_3260277_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260367_3261792_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261793_3263116_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263112_3265251_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265328_3270449_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270549_3270858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270927_3271485_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271500_3272982_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3273036_3274890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3275152_3276490_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276524_3278522_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278539_3280588_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280718_3281585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281853_3282819_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282933_3284082_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3284506_3284818_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284851_3285112_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285261_3286395_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286465_3287602_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287767_3288562_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288624_3289068_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289183_3290134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3290232_3291183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291305_3291713_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291785_3293981_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294202_3295153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	3316550	3416663	4104176	tRNA,terminase,tail,transposase,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316550_3317501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318232_3318610_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318594_3319296_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319439_3320132_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320131_3321235_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321344_3323717_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323713_3325273_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325297_3326095_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326126_3327272_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327376_3328819_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328821_3330051_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332188_3333139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334268_3334826_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334801_3335152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335320_3336115_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336111_3337161_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337160_3337850_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337936_3338434_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338465_3339782_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339798_3340773_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340809_3341268_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341267_3341948_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341950_3342379_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342431_3344162_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344227_3344800_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344780_3345467_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345822_3346494_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346822_3347044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347043_3347325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347321_3347837_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347836_3348388_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348366_3348609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348613_3349426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349425_3349689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349729_3349927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349907_3350324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350328_3354285_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354277_3354667_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354663_3355197_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355264_3355624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355633_3358246_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358271_3358562_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358579_3358909_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358918_3359437_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359691_3360192_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360199_3360622_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360618_3361017_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361013_3361409_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361408_3361597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361610_3362093_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362155_3362407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363081_3364032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364460_3365063_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365185_3365428_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365433_3366489_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366517_3367936_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367938_3369216_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369202_3369688_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370327_3371278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371534_3372224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372216_3372468_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373022_3373634_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373705_3373912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374163_3375114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375212_3376286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376453_3377248_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377287_3377812_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377804_3379547_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379756_3380515_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380517_3381225_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381241_3382123_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382133_3382892_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382860_3383616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383685_3385104_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385125_3385776_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385909_3386245_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386333_3387284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387360_3389181_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389185_3390259_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390381_3391350_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391423_3392335_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392353_3392926_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393006_3393555_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393554_3395144_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395213_3395453_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395493_3396519_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396584_3397766_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397862_3398315_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398324_3399665_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399981_3401019_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401400_3401760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401843_3402785_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402859_3403810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404103_3405198_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405288_3406161_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406182_3407022_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407097_3408615_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408711_3409812_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409828_3410251_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410273_3410486_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410532_3411453_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411635_3412385_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412387_3412717_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413004_3414357_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414368_3414752_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414813_3415614_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415712_3416663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011690	Bordetella pertussis strain D321 chromosome, complete genome	4104176	4003244	4068156	4104176	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4003244_4003730_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003818_4003956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003948_4004929_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005195_4006005_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006044_4006725_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006718_4007177_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007188_4007551_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007633_4008317_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008372_4008681_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008699_4009014_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009010_4011485_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011492_4012884_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012880_4013066_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013044_4013746_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013742_4014564_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014544_4015669_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015661_4016681_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016886_4017777_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018021_4018813_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018895_4019270_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019247_4020657_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020649_4022032_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022366_4023971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024048_4025020_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025030_4025957_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026347_4027298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027467_4028694_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028893_4029760_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029752_4030715_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030815_4031766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031864_4032815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032913_4033864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033860_4035354_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035350_4038458_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038454_4041523_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041519_4042770_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042950_4043703_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043744_4044389_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044397_4045378_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045477_4046221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046303_4046651_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046748_4047591_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047635_4048523_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048549_4048738_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048835_4050293_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050279_4051806_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051824_4052292_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052291_4053314_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053434_4054175_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054229_4055330_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055331_4056522_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056641_4057658_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057976_4058648_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058644_4059553_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059764_4060412_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064272_4065340_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065350_4066160_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066249_4067023_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067205_4068156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
