The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	0	70036	4106392	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	77634	136108	4106392	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	164893	225404	4106392	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169127_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174135_174315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	233336	286924	4106392	transposase,tRNA,protease	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236257_236431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	390857	448366	4106392	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391794_391962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401027_401171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_077274092.1|417489_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	590420	651610	4106392	transposase,protease	uncultured_Mediterranean_phage(40.0%)	57	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612498_613494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619867_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620619_620784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637727_637892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641068_641737_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	656928	703125	4106392	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(17.39%)	53	NA	NA
WP_003814219.1|656928_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995786.1|667106_667268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679541_679754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680910_681231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681223_681922_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683801_684251_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690389_691037_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	709291	764270	4106392	transposase,tRNA	Planktothrix_phage(50.0%)	50	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720109_720328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|724592_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730785_733158_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733267_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737938_738082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763144_763333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	855148	981062	4106392	transposase	Bacillus_phage(13.33%)	112	NA	NA
WP_010929591.1|855148_856099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|856197_857148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446246.1|857120_857720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857721_858156_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858152_858587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858570_859374_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859390_860206_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|860202_861018_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861164_861866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861893_863852_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863934_864885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302772.1|864871_865030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930032.1|865105_865774_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865897_867004_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867016_870130_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870126_871620_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871634_872306_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|872349_872844_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872984_873632_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873735_875784_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875780_877793_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877818_879153_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879261_880254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|880320_882405_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|882429_883401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_015040266.1|883529_884531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813985.1|884564_885806_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885886_886810_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886887_887712_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887908_888925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889121_890105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891703_893092_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893122_894112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894222_895455_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895736_896537_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896559_898791_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899578_900025_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900046_900793_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900936_901914_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902547_903159_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903152_904370_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904510_905461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905457_906177_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906297_908457_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908547_908817_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908905_909112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909110_909638_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909656_910436_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910603_911620_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911692_912184_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912194_913910_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915073_916024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|916122_917073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|917069_918920_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|919300_919960_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|920047_920200_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|920308_920476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|920487_921168_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|921449_922166_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|922180_923482_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|925626_928515_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|928738_930091_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|930119_930641_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|930637_932092_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|932126_932375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|932480_933356_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|933381_934437_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|934449_935241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|935273_936644_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|937696_937834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|937820_938771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938823_939045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|939204_939417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939536_940655_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|940751_940967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|941160_941412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941524_942475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|942471_942855_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|942909_944727_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944873_945701_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945746_946727_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946723_946936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946932_948114_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|948277_949012_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|949013_951626_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951761_953675_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|954290_954701_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954798_955884_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929591.1|955982_956933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|956929_957904_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|958028_958940_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|959216_959609_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|959738_960689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|960718_960901_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|961673_962855_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|963070_963748_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_077274086.1|963744_964518_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930094.1|964595_965177_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|965547_968229_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|968228_969362_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|969354_970440_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|970526_971426_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|971422_972751_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|972765_973437_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_003821510.1|973609_975340_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|975341_975701_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|975892_976207_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|976249_977470_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|977466_978408_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|978404_979394_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|979428_980013_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|980111_981062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1000462	1063610	4106392	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|1000462_1001413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001517_1002567_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1002704_1003721_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1005229_1005802_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005861_1006593_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006644_1007562_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008369_1011549_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011545_1012928_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_077085656.1|1012997_1013246_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1013391_1014042_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1014192_1016307_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016382_1017234_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1017230_1017857_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017853_1019608_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019900_1022606_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022618_1024280_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1024292_1026083_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1026304_1027480_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1027522_1028473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028571_1029312_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029506_1031543_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031560_1032571_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032688_1033882_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033911_1034685_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034681_1035872_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035897_1036836_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036832_1039181_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1039335_1040043_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1040080_1041214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1041306_1041459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041490_1042039_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1042057_1042543_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042720_1043659_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043661_1043979_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1044024_1044969_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046649_1047300_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1047353_1047689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047685_1048546_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048562_1048844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048917_1049181_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049424_1050375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050673_1051411_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051846_1052170_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052204_1052765_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052885_1053761_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053773_1054721_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054822_1055116_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055142_1057200_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057214_1057715_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057788_1059495_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060358_1061411_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061463_1061853_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061861_1062494_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062593_1063610_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1069594	1128608	4106392	transposase,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1069594_1071022_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071959_1072976_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1073308_1074244_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1074293_1076174_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1076240_1076585_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076729_1077866_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077862_1078936_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079093_1080530_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080620_1081262_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1081597_1082614_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1082946_1085694_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1085760_1087182_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087445_1088162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088246_1088564_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088604_1089018_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089019_1089379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089421_1090966_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091049_1091880_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1091914_1093069_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093111_1093984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094100_1096389_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097595_1098060_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098086_1099037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099054_1099192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099404_1100181_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100225_1101083_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101104_1102121_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102255_1103296_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103490_1105572_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105807_1107301_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107531_1108326_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108546_1109905_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109901_1110744_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110762_1112649_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1112886_1113519_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113537_1114140_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1114143_1114305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1114291_1115242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1116044_1116845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1116888_1117875_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118014_1119028_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119024_1119975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1119992_1120133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120087_1120546_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120582_1121896_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121913_1122285_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122281_1123745_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1123837_1124614_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1124595_1127475_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127657_1128608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1155326	1220911	4106392	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1155326_1157123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157122_1158091_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158160_1159006_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159073_1159628_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159674_1160625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160723_1161356_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161521_1163804_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163958_1166655_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166780_1167269_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169679_1172550_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172595_1173810_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174039_1175467_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1175507_1176656_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176668_1177427_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177514_1178417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178413_1179364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1179462_1180413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1180542_1181526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1181580_1182303_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1183781_1185137_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1185217_1187593_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1187757_1189833_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1189894_1190695_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1190796_1191759_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1191746_1192502_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1192609_1194247_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1194314_1195052_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1195154_1195730_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1195902_1196439_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1196441_1196786_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1196801_1197647_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1197685_1199065_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1199142_1200024_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1200122_1201073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1201069_1201480_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1201587_1202442_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1202434_1203397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1203442_1204567_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1204678_1205551_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1205675_1206455_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1206608_1208030_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1208464_1210162_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1210190_1210313_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1210388_1211330_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1211656_1212403_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1212410_1213337_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1213458_1214376_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1214415_1215369_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1215393_1215972_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1217645_1218254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1218331_1218685_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1218768_1219758_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1219754_1219943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1219960_1220911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1384525	1451025	4106392	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1384525_1385476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385541_1385721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1385837_1386560_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386579_1387725_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388632_1389583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1389770_1390973_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1390969_1391728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1392121_1392754_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1393709_1396310_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1396297_1399717_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1399724_1400630_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1400768_1401347_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1401343_1402255_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1402268_1402949_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1403150_1405190_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1405208_1406195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1406220_1407018_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1407014_1408208_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1408204_1409167_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1409184_1410225_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1410212_1410821_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1412409_1413405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1413424_1414603_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|1414613_1415531_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1415586_1416537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1416635_1417406_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1417402_1418083_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1418149_1418938_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1419184_1420201_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1420506_1421661_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1426166_1426649_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1426666_1426957_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1427083_1427794_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1427977_1428385_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1428397_1428817_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1428864_1429569_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1429634_1431056_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1431094_1431859_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1431902_1432688_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1432687_1433377_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1433379_1434513_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1434530_1435553_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1435622_1437269_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1437302_1438835_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1438913_1440734_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1440854_1442474_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1442652_1444095_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1444311_1445328_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1445374_1446163_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1446185_1446455_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1446471_1447263_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1447274_1447616_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1447626_1448127_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1448119_1449130_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1449132_1449705_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1450074_1451025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1479196	1517786	4106392	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1479196_1480531_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480583_1482920_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483045_1483609_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483617_1484709_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484780_1485236_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485236_1486031_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486027_1487209_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487195_1487801_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487797_1488571_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488582_1489410_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489571_1491935_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492002_1492722_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492845_1493271_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493305_1494256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494373_1495300_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495365_1496523_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496503_1496971_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1497118_1498069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498085_1498520_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498509_1498860_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499056_1500211_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500207_1501380_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501427_1502321_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502366_1502804_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502863_1503553_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503562_1504513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504611_1505562_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1505660_1506644_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1506906_1508004_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1508014_1511257_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1512278_1512923_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1512933_1513833_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1513880_1514966_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1514962_1516657_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1516690_1516849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1516835_1517786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1602016	1668344	4106392	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1602016_1602967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1602973_1604086_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1604772_1605975_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1606178_1608839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1608851_1612256_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023995689.1|1612923_1615149_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1615195_1615522_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1615572_1616181_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1616279_1617230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1617299_1618064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1618060_1618660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1618763_1619609_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619674_1620301_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1620297_1621248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1621234_1621423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1621346_1622468_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1622448_1623450_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623555_1625067_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1625063_1626368_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1626479_1627040_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1627307_1627862_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1628317_1628533_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628787_1631385_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1631381_1632569_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1633226_1633841_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1633929_1635057_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1635068_1635974_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1636724_1636880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1636866_1637817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1637998_1638751_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638819_1639479_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1639475_1640204_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1640216_1642496_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642520_1642724_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1642765_1643413_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1643533_1644451_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1644447_1645161_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1645398_1646169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1646173_1646773_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1647017_1648508_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648566_1648851_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1648847_1648976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1648988_1649144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1649416_1650343_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1650479_1651220_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1651386_1652763_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652944_1653850_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1655501_1657304_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1657421_1658072_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1658170_1659121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1659142_1660363_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1660548_1661961_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1662024_1663092_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1663088_1664579_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1664588_1665533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1665692_1666391_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1666468_1667374_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1667393_1668344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1704293	1759884	4106392	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1704293_1705244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1705302_1706076_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1706068_1707625_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1707621_1708572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1708558_1708714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1709898_1710501_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710740_1711442_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1711435_1712218_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1712402_1713353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1713339_1713501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1713451_1714189_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1714378_1715137_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1715183_1716173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1716350_1717319_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718858_1719827_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719835_1720777_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1721250_1722261_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1722251_1723766_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723762_1725109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1725111_1726146_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1726195_1727821_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1728373_1729324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1729428_1730376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1730429_1732244_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1732236_1732911_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1733040_1736115_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1736128_1736428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1736742_1737366_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1737609_1738479_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1738456_1739401_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1739486_1740458_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1740525_1741299_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1741295_1742492_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1742522_1743473_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1743694_1744384_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1744448_1745204_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1745255_1746248_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1746257_1747211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1747326_1748289_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749690_1750119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1750115_1751066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1751359_1752082_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752520_1753708_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1753711_1754092_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755811_1756783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756796_1757510_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757514_1758432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758538_1758835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1758933_1759884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	1992648	2062300	4106392	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1992648_1995306_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995383_1996586_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996582_1997095_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1997217_1997556_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997931_1998882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998980_1999931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000094_2001990_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002103_2002271_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002334_2002571_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002939_2004139_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005654_2006605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007056_2008058_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008230_2009088_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009084_2010347_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010447_2010822_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|2010870_2012082_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012166_2012937_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013050_2013815_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|2013930_2015067_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015063_2015870_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017614_2018586_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018742_2019255_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019413_2020388_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021388_2022183_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022208_2023015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|2023125_2023716_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023726_2024905_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025007_2025382_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025634_2026966_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027032_2030263_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031753_2032500_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032584_2033046_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033083_2034142_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034104_2035934_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035973_2036546_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|2037970_2038882_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|2039110_2040433_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040792_2041428_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041387_2042338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043208_2044081_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044158_2045298_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2045647_2046913_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046918_2047446_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047450_2048269_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048268_2048991_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049012_2049327_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2049323_2050493_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050523_2051399_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051395_2052715_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052787_2053984_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053994_2055482_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058076_2058976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059113_2060079_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060177_2061128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2061171_2061363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2061349_2062300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2073796	2123192	4106392	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073796_2074747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075884_2076181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076355_2077708_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077850_2078867_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080846_2081860_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081946_2082852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083008_2083353_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083510_2083969_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083982_2086199_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086195_2087257_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087285_2088260_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088211_2089030_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089042_2089651_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089825_2090221_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090239_2091679_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091707_2092055_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092073_2093024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2093010_2093172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2093676_2094627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094710_2096528_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096601_2097249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097261_2098191_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098360_2098825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099072_2099753_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099801_2101493_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101508_2102060_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102056_2102428_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102540_2103377_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103387_2103912_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104009_2104189_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2104318_2105350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105423_2105780_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105769_2106645_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106743_2107628_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107649_2108945_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109893_2110544_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110631_2112152_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112409_2114275_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115320_2116271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2117243_2117603_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117590_2119027_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119023_2119677_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2119673_2120873_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120970_2122245_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122241_2123192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2134396	2175087	4106392	transposase,tRNA,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2134396_2135347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135445_2136396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136355_2136769_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137053_2137353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2137762_2139931_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_010930784.1|2140730_2142761_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142780_2142993_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143270_2143810_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2143923_2145231_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145295_2146453_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146636_2147536_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147554_2148859_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148824_2149931_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150018_2150255_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150393_2151464_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151467_2152823_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2152849_2154010_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154012_2154651_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2154652_2155957_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2155997_2157293_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157299_2157806_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157802_2158951_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158978_2159404_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159726_2162609_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162701_2163457_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164222_2165572_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165670_2166621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166719_2167670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167743_2168217_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168242_2169451_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169447_2170221_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170220_2170844_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171009_2171270_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171573_2172155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172221_2172476_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172462_2175087_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2202870	2268419	4106392	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2202870_2203821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2203807_2203966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2204021_2204831_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204955_2205906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205902_2206796_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206920_2207115_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207114_2207456_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207465_2209328_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209457_2209970_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209972_2210296_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210297_2210708_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210745_2211957_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211974_2212487_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212702_2213194_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213446_2215483_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215560_2216763_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2216813_2217542_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|2219099_2220050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220620_2220833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220850_2221582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221616_2222258_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2222250_2222967_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225131_2225908_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225929_2227087_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227083_2227515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2227511_2228315_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2228328_2228784_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228796_2229768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229833_2231057_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231284_2232235_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232358_2234812_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235000_2236305_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236409_2237063_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237065_2238376_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2238554_2239133_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239244_2239445_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239790_2240357_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240440_2240644_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240950_2241271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241312_2241594_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241668_2242925_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243307_2243637_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245207_2246029_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246028_2247168_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247174_2248071_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248067_2249993_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250352_2252965_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253017_2255318_-	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255314_2256523_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256784_2257159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257155_2258106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258204_2260199_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260258_2261224_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261213_2264075_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264077_2264584_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264688_2265897_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265898_2266837_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2266998_2267472_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267468_2268419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2688062	2728731	4106392	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2688062_2689013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689123_2689306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689405_2690002_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690185_2691277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691776_2692187_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2692245_2692587_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2692592_2695010_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695022_2696045_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696119_2696479_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696494_2696692_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697027_2697978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2697964_2698126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2698172_2698622_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698618_2699569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2699555_2699702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2699679_2701128_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2701242_2701524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2701476_2701641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701627_2702578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702822_2703536_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703658_2703886_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704180_2704819_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2704891_2705962_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705958_2706909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707324_2707849_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707852_2708122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708320_2709382_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709465_2711100_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711101_2711905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711933_2712893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712896_2714411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714447_2715452_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715883_2716354_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716389_2717001_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717031_2717655_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717735_2719268_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2719302_2720544_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720587_2721619_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721615_2722785_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722778_2723459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723620_2724463_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724625_2725597_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725768_2726647_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726669_2727740_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727780_2728731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2784196	2857066	4106392	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2784196_2784613_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784723_2785356_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785384_2785828_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785849_2786941_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2786995_2787796_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787931_2788552_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788691_2789165_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790304_2791255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791251_2798913_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799153_2803200_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803512_2804094_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804090_2805389_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805468_2806497_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2806420_2806771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2806757_2807708_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807704_2808655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808971_2809577_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809630_2810944_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811018_2811489_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811488_2812277_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812287_2813940_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|2814027_2814978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816139_2816646_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816642_2817407_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817422_2817707_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817771_2818761_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818932_2819862_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819833_2820520_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820553_2821099_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821143_2822409_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822405_2823308_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824489_2825434_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825528_2827046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827087_2828716_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828823_2829705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832817_2833192_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833216_2833555_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833598_2835233_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835271_2836618_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836725_2838147_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838216_2838801_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838903_2839854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839988_2841095_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841105_2842203_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842347_2843553_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843559_2844081_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844077_2844569_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844565_2844817_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844797_2845283_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845418_2848880_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2848876_2849782_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849791_2850223_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850469_2850973_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2850984_2852451_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852525_2853401_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853397_2854405_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854872_2855178_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855268_2855859_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856049_2857066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2860209	2927020	4106392	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2860209_2861160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861258_2862209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862205_2863000_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863031_2863736_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863810_2864611_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864607_2865015_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865011_2865653_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2865645_2867667_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868906_2870238_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870234_2871185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872891_2873158_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873865_2874204_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878757_2879360_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879456_2880746_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880803_2881535_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881531_2882335_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882331_2883420_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883416_2884346_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884494_2885640_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2885661_2886612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886629_2886788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886942_2890764_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890920_2891589_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891593_2893267_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893285_2894605_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2894609_2896961_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2896980_2899149_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899145_2904335_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904424_2904739_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904966_2905212_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905306_2905825_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905924_2907130_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907245_2908643_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908759_2909338_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909410_2910802_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910969_2911920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912200_2912821_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912817_2913231_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913227_2914271_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914326_2914515_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914524_2915289_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915379_2916036_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916127_2916886_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916911_2918513_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918713_2919718_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919818_2920082_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920199_2920976_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921566_2922517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924900_2926013_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926069_2927020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	2957405	2996594	4106392	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2957405_2958356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2958342_2958588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958476_2959373_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961650_2963876_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964040_2965129_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965085_2965739_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965786_2966584_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967115_2968066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968146_2969295_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969351_2970302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2970288_2970507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2970400_2970706_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970734_2971169_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971170_2972415_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972411_2973122_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973136_2974048_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974410_2974815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974811_2975270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975276_2976185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976181_2977048_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977034_2977862_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977872_2979000_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980077_2981316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981357_2982620_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982626_2983379_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983430_2983616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983891_2984356_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984387_2985047_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985191_2987300_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987296_2988247_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988350_2988971_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989074_2989815_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990949_2992074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992119_2992488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992729_2993680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994715_2995258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2995450_2995657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995643_2996594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	3381041	3434782	4106392	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3381041_3381992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382396_3383041_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383065_3383650_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383750_3384368_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384370_3386086_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386082_3386391_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3386407_3387043_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387069_3387372_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387472_3388327_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388514_3388739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388908_3389181_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389598_3390006_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390375_3391170_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391270_3392506_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392574_3393591_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3393587_3394979_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394975_3396172_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396168_3397707_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397703_3398963_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3400903_3401854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3401840_3402017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3402620_3403715_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403707_3405042_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404995_3405679_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405704_3406868_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3406864_3407866_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407865_3408738_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408734_3409484_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409480_3410272_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410268_3411408_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3411716_3412469_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412502_3413285_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413288_3413678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414817_3415681_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415716_3416805_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416801_3417752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3417738_3418152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3418105_3421084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422010_3422889_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424837_3425788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425784_3426252_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426294_3427065_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427085_3427886_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427896_3429306_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429400_3430186_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430425_3431442_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431549_3431942_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432079_3432760_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3432764_3433763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433831_3434782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	3440937	3500237	4106392	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440937_3442701_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442812_3443691_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443803_3444619_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444622_3444874_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444958_3445975_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446305_3446527_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448887_3449805_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450302_3451511_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451590_3453162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453279_3454215_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454403_3455348_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3455416_3455632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3455915_3461633_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461638_3462766_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462821_3463448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463719_3464736_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464831_3465542_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465538_3466528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3466659_3468255_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468257_3468995_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469150_3470023_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470291_3471512_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471508_3472168_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472239_3472872_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472901_3473420_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473430_3474540_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474586_3475441_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475442_3476345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477567_3478518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480274_3481264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481439_3482228_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482224_3483256_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483274_3483838_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483893_3485414_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485677_3486382_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486389_3487127_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487232_3487607_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487649_3488939_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488935_3490105_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490101_3490941_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491000_3491936_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491948_3492899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492997_3493960_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493991_3494351_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494475_3495378_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495379_3497152_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497186_3497963_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499286_3500237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	3515175	3573248	4106392	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515175_3516126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516254_3517388_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517431_3518337_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518339_3520040_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520036_3520957_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520964_3521942_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522000_3523035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3525009_3525246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3525372_3526236_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526324_3527146_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527225_3527963_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527959_3528952_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529065_3529728_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529772_3530921_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533244_3534195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534535_3535486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535584_3536535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536831_3537329_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537371_3539147_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3539193_3540021_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540027_3540762_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541931_3542726_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543015_3543606_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543639_3544968_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545042_3546188_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546299_3547298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547260_3547695_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549211_3550096_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550092_3551298_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551294_3552155_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552267_3554058_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554098_3554764_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554764_3555073_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555238_3556525_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557958_3558909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560860_3562075_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562180_3563170_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563166_3563775_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563787_3564417_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564413_3565034_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565065_3565857_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3566699_3567164_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567182_3568109_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568162_3569449_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570379_3571252_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571248_3572199_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572297_3573248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011693	Bordetella pertussis strain E530, complete genome	4106392	4005460	4070372	4106392	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005460_4005946_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006034_4006172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006164_4007145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007411_4008221_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008260_4008941_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008934_4009393_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009404_4009767_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009849_4010533_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010588_4010897_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010915_4011230_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011226_4013701_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013708_4015100_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015096_4015282_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015260_4015962_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015958_4016780_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016760_4017885_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017877_4018897_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4019102_4020137_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020237_4021029_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021111_4021486_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021463_4022873_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022865_4024248_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024582_4026187_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4026222_4027236_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027246_4028173_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028563_4029514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029683_4030910_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031109_4031976_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031968_4032931_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033031_4033982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034080_4035031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035129_4036080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036076_4037570_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037566_4040674_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040670_4043739_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043735_4044986_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045166_4045928_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045960_4046611_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046613_4047453_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047693_4048437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048519_4048867_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048964_4049807_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049851_4050739_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050765_4050954_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051051_4052509_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052495_4054022_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054040_4054508_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054507_4055530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055650_4056391_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056445_4057546_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057547_4058738_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058857_4059874_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060192_4060864_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060860_4061769_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061980_4062628_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066479_4067556_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067566_4068376_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068465_4069239_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4069258_4069435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069421_4070372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
