The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	27282	70036	4110595	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	77634	136108	4110595	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	164892	303019	4110595	transposase,tRNA,protease	Klosneuvirus(10.53%)	117	NA	NA
WP_010930800.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225620_226316_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226332_227745_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227857_229288_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229329_231243_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231561_232128_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232218_233220_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267752_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288604_290191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291391_292252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293355_294165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300550_301501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301692_301980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302068_303019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	390855	448364	4110595	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_077069043.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	591472	652663	4110595	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591472_592423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592898_593789_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593785_594607_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594806_595298_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595316_596390_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596436_597540_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597615_598236_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598256_598766_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598820_599072_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599135_600269_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600276_600663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600659_603179_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603607_603946_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603942_604449_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604510_605311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605421_606363_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606456_607992_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609671_611522_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611525_612359_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612358_613300_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613551_614523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614664_616953_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617259_618168_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618222_619188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619262_620924_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620995_621706_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621854_622805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623503_623887_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623944_624547_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624564_624966_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625081_625993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625989_626571_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627365_628100_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628140_629190_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629337_629916_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630302_631280_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631373_635768_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635968_636817_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636975_637788_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637843_638794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638892_639693_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639754_640138_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640149_641502_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641789_642119_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642121_642871_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643053_643974_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644020_644233_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644255_644678_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644694_645795_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645891_647409_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647484_648324_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648345_649218_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649308_650403_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650696_651647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651721_652663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	657987	704178	4110595	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657987_659013_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659053_659293_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659362_660952_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660951_661500_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661580_662153_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662171_663083_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663156_664125_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664247_665321_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665325_667146_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667222_668173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668261_668597_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668730_669381_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669402_670821_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670890_671646_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671614_672373_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672383_673265_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673281_673989_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673991_674750_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674959_676702_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676694_677219_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677258_678053_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678220_679294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679392_680343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680594_680801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680872_681484_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682038_682290_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682282_682972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|683228_684179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684818_685304_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685290_686568_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686570_687989_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688017_689073_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689078_689321_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689443_690046_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_014905499.1|690474_691425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692099_692351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692413_692896_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692909_693098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693097_693493_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693489_693888_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693884_694307_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694314_694815_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695069_695588_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695597_695927_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695944_696235_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696260_698873_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698882_699242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699309_699843_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699839_700229_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700221_704178_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	710344	766372	4110595	transposase,tRNA	Planktothrix_phage(50.0%)	48	NA	NA
WP_003814636.1|710344_712075_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712127_712556_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712558_713239_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713238_713697_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713733_714708_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714724_716041_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716072_716570_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716656_717346_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717345_718395_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718391_719186_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719354_719705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719680_720238_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721367_722318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724455_725685_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725687_727130_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727234_728380_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728411_729209_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729233_730793_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730789_733162_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733271_734375_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734374_735067_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735210_735912_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735896_736274_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737005_737956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|738054_739005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739164_740037_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740377_740596_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740635_742015_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742056_743454_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743493_745146_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745149_746034_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746033_746975_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747053_748673_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748839_749655_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749722_750292_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750292_751243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751897_752995_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753028_754294_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754451_755402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755645_756236_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756251_758696_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758815_759787_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759918_760443_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760402_761353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|761451_762402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|762623_764819_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|764891_765299_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|765421_766372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	888961	956937	4110595	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|888961_889978_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|890174_891158_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|892756_894145_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|894175_895165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|895275_896508_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|896789_897590_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|897612_899844_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|900631_901078_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|901099_901846_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|901989_902967_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|903600_904212_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|904205_905423_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|905563_906514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|906510_907230_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|907350_909510_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|909600_909870_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|909958_910165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|910163_910691_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|910709_911489_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|911656_912673_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|912745_913237_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|913247_914963_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|916126_917077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|917073_918906_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|919304_919964_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|920491_921172_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|921453_922170_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|922184_923486_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|925630_928519_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|928742_930095_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|930123_930645_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|930641_932096_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|932130_932379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|932484_933360_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|933385_934441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|934453_935245_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|935277_936648_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|937824_938775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938827_939049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|939208_939421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939540_940659_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|940755_940971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|941164_941416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941528_942479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|942475_942859_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|942913_944728_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944877_945705_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945750_946731_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946727_946940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946936_948118_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|948281_949016_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|949017_951630_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951765_953679_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|954294_954705_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954802_955888_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|955986_956937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1000466	1072983	4110595	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|1000466_1001417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001521_1002571_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1002708_1003725_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1005233_1005806_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005865_1006597_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006648_1007566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008373_1011553_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011549_1012932_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1013001_1013253_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1013398_1014013_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1014199_1016260_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016389_1017241_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1017237_1017864_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017860_1019615_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019907_1022613_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022625_1024287_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1024299_1026090_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1026311_1027487_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1027529_1028480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028578_1029319_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029513_1031550_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031567_1032578_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032695_1033889_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033918_1034692_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034688_1035879_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035904_1036843_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036839_1039188_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1039342_1039984_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1041313_1041466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041497_1042046_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1042064_1042550_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042727_1043666_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043668_1043986_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1044031_1044976_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046656_1047307_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1047360_1047696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047692_1048553_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048569_1048851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048924_1049188_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049431_1050382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050680_1051418_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051853_1052177_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052211_1052772_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052892_1053768_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053780_1054728_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054829_1055123_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055149_1057207_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057221_1057722_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057795_1059502_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060365_1061418_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061470_1061860_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061868_1062501_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062600_1063617_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1064447_1065455_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065451_1067095_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1067091_1067979_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068119_1068593_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068582_1069605_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069601_1071029_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1071966_1072983_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1076736	1137761	4110595	transposase,tRNA,holin	Catovirus(20.0%)	50	NA	NA
WP_010930155.1|1076736_1077873_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077869_1078943_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079100_1080537_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080627_1081269_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1081604_1082621_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1082953_1085701_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1085767_1087189_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087452_1088169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088253_1088571_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088611_1089025_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089026_1089386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089428_1090973_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091056_1091887_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091921_1093076_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_014486065.1|1094105_1096394_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097600_1098065_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098091_1099042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1099409_1100186_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100230_1101088_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101109_1102126_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102260_1103301_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103495_1105577_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105812_1107306_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107536_1108331_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108551_1109910_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109906_1110749_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110767_1112654_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112595_1112847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112891_1113524_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113542_1114145_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1114296_1115247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115827_1116535_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116893_1117880_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118019_1119033_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119029_1119980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1120092_1120551_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120587_1121901_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121918_1122290_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122286_1123750_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123890_1124619_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124600_1127450_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127662_1128613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128780_1129605_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129604_1130483_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131387_1132503_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132531_1133326_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133322_1135188_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135266_1135899_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135895_1136198_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136240_1137761_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1155331	1221964	4110595	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1155331_1157128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157127_1158096_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158165_1159011_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159078_1159633_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159679_1160630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160728_1161361_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161525_1163808_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163962_1166659_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166784_1167273_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1169355_1170306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813631.1|1170732_1173603_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1173648_1174863_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1175092_1176520_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1176617_1177709_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1177721_1178480_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1178567_1179470_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1179466_1180417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1180546_1181530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1181584_1182307_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1183785_1185141_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1185221_1187597_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1187761_1189837_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1189898_1190693_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1190800_1191763_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1191750_1192506_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1192613_1194251_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1194318_1195056_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1195158_1195734_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1195906_1196443_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1196475_1196790_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1196805_1197651_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1197689_1199069_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1199146_1200028_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1200126_1201077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1201073_1201484_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1201591_1202446_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1202438_1203401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1203446_1204571_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1204676_1205555_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1205679_1206459_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1206612_1208034_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1208468_1210166_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1210392_1211334_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1211660_1212407_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1212414_1213341_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1213462_1214380_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1214419_1215373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1215397_1215976_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1217649_1218258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1218335_1218689_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1218772_1219762_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1219964_1220915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1221013_1221964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1321100	1389587	4110595	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1321100_1322051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1322819_1323458_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1324347_1324794_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1324875_1325577_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1325577_1326345_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1326341_1327580_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1327579_1328506_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1328608_1329724_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1329739_1330690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1331043_1331625_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1331621_1332455_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1332665_1333979_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1334155_1335037_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1335056_1335908_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1335960_1337049_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1337159_1338287_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1338521_1339133_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1339231_1340182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1340403_1340781_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1340928_1341426_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1341422_1341950_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1342083_1342899_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1342911_1344093_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1344140_1345034_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1345160_1345631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1345756_1346584_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1346612_1347389_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1347385_1347661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1347675_1348140_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1348151_1348853_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1348962_1349463_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1349545_1350724_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1352351_1352687_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1352874_1354323_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1354380_1354725_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1354831_1355371_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1355463_1356414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1356512_1356920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1357152_1357584_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357765_1358170_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359406_1359730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359732_1360620_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360652_1361078_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1361149_1361503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361742_1362249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362287_1363619_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363678_1364494_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364490_1365345_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368407_1370951_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372317_1374072_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1374068_1376189_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1376193_1378389_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378385_1381727_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384529_1385480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385545_1385725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1385841_1386597_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386583_1387729_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388636_1389587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1450078	1505566	4110595	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450078_1451029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1452230_1452677_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452669_1454145_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454141_1454897_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454889_1455900_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455889_1457566_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457878_1458211_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1458224_1458620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458629_1458956_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458952_1459279_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1459205_1460228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1460224_1460575_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460622_1461051_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461058_1462432_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462572_1462950_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1463212_1464520_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464580_1465411_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1465407_1465896_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465937_1467458_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1467501_1467978_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468781_1471379_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1471408_1472230_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472956_1473706_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473889_1474768_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474865_1475582_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475596_1476157_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1476323_1477088_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1477107_1477965_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477961_1479161_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1479200_1480535_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480587_1482924_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483049_1483613_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483621_1484713_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484784_1485240_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485240_1486035_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486031_1487213_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487199_1487805_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487801_1488575_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488586_1489414_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489575_1491939_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492006_1492726_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492849_1493275_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493309_1494260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494377_1495304_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495369_1496527_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496507_1496975_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1497122_1498073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498089_1498524_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498513_1498864_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499060_1500215_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500211_1501384_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501431_1502325_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502370_1502808_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502867_1503557_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503566_1504517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504615_1505566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1798136	1846151	4110595	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1798136_1799087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799185_1801786_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801892_1802897_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803005_1804346_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804386_1805415_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805610_1806156_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806152_1806713_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806811_1807762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807799_1808387_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808404_1808788_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810147_1811440_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811574_1812615_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812712_1813729_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1813996_1814632_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814769_1815528_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815512_1816292_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816309_1817194_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817190_1817970_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1817996_1818674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818962_1819715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819833_1821234_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821257_1821656_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821831_1822032_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822170_1822899_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1823032_1824448_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1824451_1825315_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825327_1826077_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1826319_1828275_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1828256_1828925_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829699_1830650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1830748_1831699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831847_1832186_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832243_1832405_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832436_1832637_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832902_1835476_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1835546_1838096_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840646_1841135_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841226_1842378_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842431_1843253_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843291_1844521_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844649_1845090_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1845200_1846151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1907713	1966983	4110595	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1907713_1908664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1908788_1909598_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1909798_1910749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1912022_1913240_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1914296_1915199_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1915275_1916148_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1916278_1916647_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1916704_1917751_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1917946_1919203_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1919207_1920545_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1920694_1921651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1921753_1922686_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1922801_1923122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1923114_1923474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1923521_1925096_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1925148_1926093_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1926110_1926941_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1926933_1928568_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1928564_1929920_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1930826_1932404_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1932407_1933682_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1933779_1934154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1935869_1937003_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1937040_1937646_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1937642_1938461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1938532_1941157_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1941143_1941398_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1941464_1942046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1942349_1942610_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1942775_1943399_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1943398_1944172_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1944168_1945377_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1945402_1945876_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1945949_1946900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1946998_1947949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1948047_1949397_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1950162_1950918_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1951010_1953893_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1954215_1954641_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1954668_1955817_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1955813_1956320_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1956335_1957622_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1957671_1958967_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1958968_1959607_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1959612_1960770_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1960796_1962152_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1962155_1963226_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1963364_1963601_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1963688_1964795_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1964760_1966065_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1966083_1966983_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	1977223	2021546	4110595	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1977223_1978174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1978272_1979223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1979422_1980508_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1980523_1981285_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1981281_1982205_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1982303_1982828_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1982836_1983580_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1983675_1983915_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1983928_1984081_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1984166_1985657_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1985748_1986687_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1986683_1986860_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1986862_1987525_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1989146_1989290_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1989286_1990261_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1990427_1991378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1991374_1992649_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1992752_1993946_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1993942_1994596_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1994592_1996029_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1996016_1996376_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1997190_1997331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1997348_1998299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1999344_2001210_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2001467_2002988_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2003075_2003726_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2004674_2005970_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2005991_2006876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2006974_2007850_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2007839_2008196_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2008326_2009301_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2009430_2009610_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2009707_2010232_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2010242_2011079_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2011191_2011563_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2011559_2012111_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2012126_2013818_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2013866_2014547_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2014794_2015259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2015428_2016358_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2016370_2017018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2017091_2018909_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2018992_2019943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2020595_2021546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2051319	2115688	4110595	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2051319_2052270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2052491_2053442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2053540_2054506_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2054643_2055543_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2058137_2059625_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2059635_2060832_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2060904_2062224_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2062220_2063096_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2063126_2064275_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2064292_2064607_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2064628_2065351_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2065350_2066169_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2066173_2066701_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2066706_2067963_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2068321_2069461_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2069538_2070411_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2071281_2072232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2072191_2072827_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2073186_2074509_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2074827_2075649_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2077073_2077646_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2077685_2079515_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2079477_2080536_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2080573_2081035_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2081119_2081866_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2083356_2086587_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2086653_2087985_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2088237_2088612_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2088714_2089893_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2089903_2090494_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2090604_2091411_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2091436_2092231_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2093231_2094206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2094364_2094877_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2095033_2096005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2097749_2098556_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2098552_2099854_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2099804_2100569_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2100682_2101453_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2101537_2102725_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2102797_2103172_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2103272_2104535_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2104531_2105389_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2105561_2106563_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2107014_2107965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2109528_2110680_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2111048_2111285_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2111348_2111516_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2111629_2113525_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2113688_2114639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2114737_2115688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2302156	2363504	4110595	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2302156_2303107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2303223_2303943_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2304115_2305102_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2305102_2305585_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2305588_2306872_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2306868_2307807_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2307803_2309513_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2309522_2310770_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2312380_2313670_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2314807_2315581_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2316242_2316986_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2317060_2317801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2317996_2318833_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2318883_2319654_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2319703_2320756_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2320752_2321379_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2321375_2322410_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2322588_2323605_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2323703_2324654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2327394_2328684_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2328802_2329240_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2329283_2330492_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2330638_2331103_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2331126_2332077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2333061_2333835_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2333831_2334830_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2334914_2335691_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2335846_2337451_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2337831_2338956_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2339082_2339706_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2339702_2341604_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2341652_2342447_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2342459_2343461_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2343457_2343907_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2343956_2344805_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2344902_2345445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2345488_2346439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2346594_2346921_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2346917_2347199_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2347198_2347678_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2347674_2349303_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2349299_2349644_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2349643_2352577_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2353735_2354686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2354784_2355081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2355187_2356105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2356109_2356823_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2356836_2357808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2359557_2359908_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2359911_2361099_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2361537_2362260_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2362553_2363504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2384295	2455449	4110595	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2384295_2385246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2385798_2387424_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2387473_2388508_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2388510_2389857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2389853_2391368_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2391358_2392369_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2392842_2393784_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2393792_2394761_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2396300_2397269_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2397446_2398436_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2398482_2399241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2399430_2400168_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2400266_2401217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2401401_2402184_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2402177_2402879_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2403118_2403721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2405047_2405998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2405994_2407551_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2407543_2408317_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2408375_2409326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2409407_2410583_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2410596_2412654_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2412650_2413676_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2413687_2414977_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2414999_2416097_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2416093_2416984_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2416980_2419065_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2419096_2420266_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2420307_2421048_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2421047_2421818_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2422673_2423459_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2423485_2425570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2425737_2427693_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2428016_2428517_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2428615_2430142_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2430279_2431167_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2431181_2432135_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2432186_2434277_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2434292_2434679_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2437372_2438176_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2439469_2440372_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2440436_2441213_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2441534_2442584_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2442707_2444378_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2444382_2445177_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2445275_2446226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2446245_2447151_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2447228_2447927_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2448086_2449031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2449040_2450528_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2450527_2451595_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2451658_2453071_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2453256_2454477_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2454498_2455449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2539649	2590821	4110595	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2539649_2540600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540698_2541469_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541465_2542137_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542133_2542775_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542787_2543708_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543868_2545029_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545070_2546021_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2546619_2546844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547008_2548703_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548824_2549094_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549209_2549608_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549618_2550575_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550711_2551257_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551277_2553227_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553614_2554391_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554396_2554789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555210_2556161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556157_2557255_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557286_2558237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2560018_2561260_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561271_2562045_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562071_2563022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563120_2563903_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563991_2565218_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565943_2567329_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567347_2567953_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567949_2569806_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569802_2570603_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570617_2571811_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571878_2572853_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572975_2574199_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574309_2576514_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576808_2577468_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577475_2577682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578020_2578776_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579046_2579562_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579834_2580152_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580339_2580576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580866_2582222_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582268_2583609_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583710_2584343_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584342_2586712_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586744_2587704_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587690_2588377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588373_2588706_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588821_2589772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589870_2590821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2690165	2730834	4110595	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690165_2691116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691226_2691409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691508_2692105_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692288_2693380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693879_2694290_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694348_2694678_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694695_2697113_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697125_2698148_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698222_2698582_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698597_2698795_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699130_2700081_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700275_2700725_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700721_2701672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701782_2703231_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703345_2703591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703730_2704681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704925_2705639_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705761_2705989_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706283_2706922_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707030_2708065_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708061_2709012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709427_2709952_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709955_2710225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710423_2711485_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711568_2713203_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713204_2714008_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714036_2714996_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2714999_2716514_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716550_2717555_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717986_2718457_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718492_2719104_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719134_2719758_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719838_2721371_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721405_2722623_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722690_2723722_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723718_2724888_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724881_2725562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725723_2726566_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726728_2727700_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727871_2728750_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728772_2729843_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729883_2730834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2786299	2859169	4110595	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2786299_2786716_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786826_2787459_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787487_2787931_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787952_2789044_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789098_2789899_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790034_2790655_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790794_2791268_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792407_2793358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793354_2801016_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801256_2805303_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805615_2806197_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806193_2807492_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807571_2808600_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808860_2809811_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809807_2810758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811074_2811680_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811733_2813047_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813121_2813592_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813591_2814380_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814390_2816043_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816130_2817081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818242_2818749_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818745_2819510_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819525_2819810_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819874_2820864_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821035_2821965_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821936_2822623_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822656_2823202_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823246_2824512_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824508_2825411_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826592_2827537_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827631_2829149_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829190_2830819_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830926_2831808_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834920_2835295_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835319_2835658_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835701_2837336_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837374_2838721_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838828_2840250_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840319_2840904_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841006_2841957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842091_2843198_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843208_2844306_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844450_2845656_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845662_2846184_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846180_2846663_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846668_2846920_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846900_2847386_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847521_2850983_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851000_2851885_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851894_2852326_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852572_2853076_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853153_2854554_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854628_2855504_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855500_2856508_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856975_2857281_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857371_2857962_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858152_2859169_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2862312	2929123	4110595	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2862312_2863263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863361_2864312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864308_2865103_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865134_2865839_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865913_2866714_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866710_2867118_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867114_2867756_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867748_2869749_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871009_2872341_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872337_2873288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874994_2875261_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875968_2876307_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880860_2881463_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881559_2882849_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882906_2883638_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883634_2884438_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884434_2885523_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885519_2886449_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886597_2887743_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887764_2888715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2889045_2892867_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893023_2893692_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893696_2895370_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895388_2896708_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896712_2899028_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899083_2901252_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901248_2906429_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906527_2906842_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907069_2907315_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907409_2907928_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908027_2909233_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909348_2910746_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910862_2911441_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911513_2912905_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913072_2914023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914303_2914924_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914920_2915334_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915330_2916374_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916429_2916618_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916627_2917392_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917482_2918139_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918230_2918989_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919014_2920616_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920816_2921821_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921921_2922185_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922302_2923079_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923669_2924620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927003_2928116_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928172_2929123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	2959509	3003200	4110595	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2959509_2960460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2960580_2961477_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963754_2965980_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966144_2967233_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967189_2967843_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967890_2968688_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969219_2970170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970250_2971399_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971455_2972406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972504_2972810_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972838_2973273_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973274_2974519_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974515_2975226_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975240_2976152_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976514_2976919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976915_2977374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977380_2978289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978285_2979152_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979138_2979966_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979976_2981104_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982181_2983420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983461_2984724_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984730_2985483_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985534_2985720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985995_2986460_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986491_2987151_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987295_2989404_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989400_2990351_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990454_2991075_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991178_2991919_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993053_2994178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994223_2994592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994833_2995784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996819_2997362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997747_2998698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998694_2999603_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999729_3000566_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001078_3002188_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3002249_3003200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	3384194	3437935	4110595	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384194_3385145_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385549_3386194_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386218_3386803_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386903_3387521_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387523_3389239_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389235_3389544_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389560_3390178_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390222_3390525_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390625_3391480_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391667_3391892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392061_3392334_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392751_3393159_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393528_3394323_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394423_3395659_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395727_3396744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396755_3398132_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398128_3399325_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399321_3400860_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400856_3402116_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404056_3405007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405773_3406868_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406860_3408195_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408148_3408832_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408857_3410021_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410017_3411019_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411018_3411891_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411887_3412637_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412633_3413425_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413421_3414561_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414836_3415622_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415655_3416438_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416441_3416831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417970_3418834_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418869_3419958_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419954_3420905_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421258_3424237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425163_3426042_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427990_3428941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428937_3429405_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429447_3430218_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430238_3431039_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431049_3432459_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432553_3433339_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433578_3434595_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434702_3435095_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435232_3435913_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435917_3436889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436984_3437935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	3444090	3503390	4110595	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3444090_3445854_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445965_3446844_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446956_3447772_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447775_3448027_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3448111_3449128_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449458_3449680_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452040_3452958_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453455_3454664_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454743_3456315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456432_3457368_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457556_3458501_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459068_3464786_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464791_3465919_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465974_3466601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062826590.1|3466872_3467889_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467984_3468695_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468691_3469681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469776_3471408_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471410_3472148_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472303_3473176_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473525_3474665_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474661_3475321_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475392_3476025_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476054_3476573_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476583_3477693_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477739_3478594_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478595_3479498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480720_3481671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483427_3484417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484592_3485381_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485377_3486409_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486427_3486991_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487046_3488567_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488830_3489535_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489542_3490271_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490385_3490760_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490802_3492092_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492088_3493258_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493254_3494094_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494153_3495089_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495101_3496052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496150_3497113_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497144_3497504_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497628_3498531_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498532_3500305_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500339_3501116_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502439_3503390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	3518328	3577450	4110595	transposase,tRNA	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3518328_3519279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519407_3520541_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520584_3521490_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521492_3523193_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523189_3524110_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524117_3525095_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525153_3526188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528162_3528399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528525_3529389_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529477_3530299_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530378_3531116_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531112_3532105_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532257_3532881_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532925_3534074_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3536397_3537348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|3537446_3538397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538737_3539688_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539786_3540737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541033_3541531_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541573_3543349_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543356_3544223_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544229_3544964_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546133_3546928_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547217_3547808_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547841_3549170_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549244_3550390_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550501_3551500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551462_3551897_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553413_3554298_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554294_3555500_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555496_3556357_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556469_3558260_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558300_3558945_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558966_3559275_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559440_3560727_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562160_3563111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565062_3566277_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566382_3567372_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567368_3567977_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567989_3568619_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568615_3569236_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569267_3570059_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570910_3571366_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571384_3572311_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572364_3573651_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574581_3575454_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575450_3576401_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576499_3577450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011697	Bordetella pertussis strain H763 chromosome, complete genome	4110595	4009663	4074575	4110595	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4009663_4010149_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010237_4010375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010367_4011348_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011614_4012424_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012463_4013144_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013137_4013596_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013607_4013970_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014052_4014736_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014791_4015100_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015118_4015433_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015429_4017904_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_077082610.1|4017911_4019303_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019299_4019485_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019463_4020165_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020161_4020983_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020963_4022088_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022080_4023100_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023305_4024196_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024440_4025232_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025314_4025689_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025666_4027076_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027068_4028451_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028785_4030390_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030467_4031439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031449_4032376_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032766_4033717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033886_4035113_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035312_4036179_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036171_4037134_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037234_4038185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038283_4039234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039332_4040283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040279_4041773_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041769_4044877_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044873_4047942_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047938_4049189_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049369_4050122_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050163_4050808_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050816_4051797_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051896_4052640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052722_4053070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053167_4054010_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054054_4054942_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054968_4055157_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055254_4056712_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056698_4058225_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058243_4058711_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058710_4059733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059853_4060594_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060648_4061749_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061750_4062941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063060_4064077_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064395_4065067_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065063_4065972_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066183_4066831_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070691_4071759_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071769_4072579_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072668_4073442_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4073624_4074575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
