The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	27282	70036	4105334	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	77634	136108	4105334	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	164894	225405	4105334	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	233337	286925	4105334	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	390858	448367	4105334	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	589384	650575	4105334	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589384_590335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590810_591701_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591697_592519_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592718_593210_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593228_594302_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594348_595452_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595527_596148_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596168_596678_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596732_596984_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597047_598181_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598188_598575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598571_601091_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601519_601858_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601854_602361_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602422_603223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603333_604275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604368_605904_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607583_609434_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609437_610271_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610270_611212_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611463_612435_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612576_614865_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615171_616080_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616134_617100_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617174_618836_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618907_619618_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619584_619749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619766_620717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621415_621799_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621856_622459_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622476_622878_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622993_623905_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623901_624483_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625277_626012_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626052_627102_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627249_627828_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628214_629192_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629285_633680_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633880_634729_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634887_635700_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635755_636706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636804_637605_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637666_638050_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638061_639414_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639701_640031_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640033_640783_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640965_641886_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641932_642145_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642167_642590_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642606_643707_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643803_645321_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645396_646236_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646257_647130_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647220_648315_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648608_649559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649633_650575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	655899	702090	4105334	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655899_656925_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656965_657205_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657274_658864_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658863_659412_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659492_660065_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660083_660995_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661068_662037_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662159_663233_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663237_665058_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665134_666085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666173_666509_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666642_667293_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667314_668733_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668802_669558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669526_670285_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670295_671177_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671193_671901_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671903_672662_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672871_674614_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674606_675131_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675170_675965_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676132_677206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677304_678255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678506_678713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678784_679396_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679950_680202_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680194_680884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680901_681123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681140_682091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682730_683216_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683202_684480_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684482_685901_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685929_686985_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686990_687233_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687355_687958_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688386_689337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690011_690263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690325_690808_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690821_691010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691009_691405_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691401_691800_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691796_692219_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692226_692727_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692981_693500_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693509_693839_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693856_694147_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694172_696785_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696794_697154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697221_697755_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697751_698141_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698133_702090_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	708256	762186	4105334	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708256_709987_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710039_710468_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710470_711151_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711150_711609_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711645_712620_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712636_713953_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713984_714482_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714568_715258_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715257_716307_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716303_717098_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717266_717617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717592_718150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719279_720230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722367_723597_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723599_725042_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725146_726292_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726323_727121_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727145_728705_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728701_731074_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731183_732287_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732286_732979_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733122_733824_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733808_734186_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734917_735868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736027_736900_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737240_737459_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737498_738878_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738919_740317_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740356_742009_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742012_742897_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742896_743838_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743916_745536_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745702_746518_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746585_747155_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747155_748106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748760_749858_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749891_751157_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751314_752265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752508_753099_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753114_755559_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755678_756650_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756781_757306_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757265_758216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758437_760633_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760705_761113_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761235_762186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	884775	952751	4105334	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884775_885792_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885988_886972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888570_889959_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889989_890979_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891089_892322_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892603_893404_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893426_895658_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896445_896892_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896913_897660_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897803_898781_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899414_900026_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900019_901237_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901377_902328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902324_903044_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903164_905324_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905414_905684_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905772_905979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905977_906505_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906523_907303_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907470_908487_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908559_909051_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909061_910777_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911940_912891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912887_914720_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915118_915778_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916305_916986_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917267_917984_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917998_919300_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921444_924333_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924556_925909_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925937_926459_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926455_927910_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927944_928193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928298_929174_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929199_930255_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930267_931059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931091_932462_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933638_934589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934641_934863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935022_935235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935354_936473_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936569_936785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936978_937230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937342_938293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938289_938673_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938727_940542_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940691_941519_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941564_942545_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942541_942754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942750_943932_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944095_944830_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944831_947444_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947579_949493_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950108_950519_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950616_951702_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951800_952751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	996280	1068782	4105334	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996280_997231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997335_998385_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998522_999539_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001047_1001620_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001679_1002411_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002462_1003380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004187_1007367_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007363_1008746_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008815_1009067_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009212_1009827_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010013_1012074_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012203_1013055_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013051_1013678_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013674_1015429_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015721_1018427_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_014905654.1|1018439_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022110_1023286_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023328_1024279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029717_1030491_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035141_1035783_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037112_1037265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037296_1037845_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037863_1038349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038526_1039465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039830_1040775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043491_1044352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045230_1046181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047652_1047976_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049579_1050527_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053594_1055301_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057269_1057659_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058399_1059416_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060246_1061254_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061250_1062894_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062890_1063778_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063918_1064392_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064381_1065404_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065400_1066828_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067765_1068782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1072535	1134611	4105334	transposase,holin,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072535_1073672_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073668_1074742_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074899_1076336_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076426_1077068_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077403_1078420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080462_1081413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116847_1116988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125630_1126455_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126454_1127333_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128237_1129353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129381_1130176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130172_1132038_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132116_1132749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132745_1133048_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133090_1134611_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1152181	1218701	4105334	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1152181_1153978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153977_1154946_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155015_1155861_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155928_1156483_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157578_1158211_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185700_1186495_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192277_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215560_1215749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216803_1217754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217750_1218701_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1269629	1326840	4105334	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269629_1270580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274326_1274938_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275160_1276621_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276717_1278310_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278663_1278921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278922_1280263_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280358_1281048_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281060_1282491_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284215_1285037_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285047_1286619_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286647_1287625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287651_1288455_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288451_1289246_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289253_1290489_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290502_1290916_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291665_1292616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293237_1294965_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295076_1296435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296491_1296710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296727_1297678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297718_1298789_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298811_1299690_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299861_1300833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300995_1301838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301999_1302680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302673_1303843_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303839_1304871_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304938_1306156_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306190_1307723_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307803_1308427_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308457_1309069_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309104_1309575_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310006_1311011_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311047_1312562_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312565_1313525_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313553_1314357_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314358_1315993_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316076_1317138_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317336_1317606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317609_1318134_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318549_1319500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319496_1320531_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320639_1321278_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321572_1321800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321922_1322636_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322880_1323831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323970_1324216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324330_1325779_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325889_1326840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1417073	1469226	4105334	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417073_1418024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418041_1418194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418190_1418544_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418556_1418919_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418960_1419386_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419588_1420845_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421043_1422024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422173_1423415_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423513_1424464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424472_1425168_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427989_1428589_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428599_1430765_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430788_1432573_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432572_1432662_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433356_1433629_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433628_1435695_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435691_1436642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436740_1437691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437806_1438139_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438135_1438822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438808_1439768_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439800_1442170_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442169_1442802_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442903_1444244_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444290_1445646_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445936_1446173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446360_1446678_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446950_1447466_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447736_1448492_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448830_1449037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449044_1449704_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449998_1452203_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452313_1453537_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453659_1454634_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454701_1455895_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455909_1456710_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456706_1458563_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458559_1459165_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459183_1460569_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461294_1462521_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462609_1463392_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463490_1464441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464467_1465241_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465252_1466494_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468275_1469226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1513151	1573063	4105334	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1513151_1513640_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513757_1514336_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514441_1514810_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514908_1515859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515865_1516978_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517664_1518867_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519070_1521731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521743_1525148_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525815_1528041_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528087_1528414_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528464_1529073_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529171_1530122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1530220_1531171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531240_1532005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532001_1532538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532704_1533556_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533615_1534242_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534238_1535189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535287_1536400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536389_1537391_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537496_1539008_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539004_1540309_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540420_1540981_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541248_1541803_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542258_1542474_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542728_1545326_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545322_1546510_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547168_1547783_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547871_1548993_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549010_1549916_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550808_1551759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551940_1552693_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552761_1553421_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553417_1554146_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554158_1556438_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556462_1556666_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556707_1557340_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557475_1558393_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558389_1559103_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559340_1560111_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560115_1560715_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560959_1562450_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562508_1562793_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563358_1564285_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564421_1565162_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565328_1566705_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566886_1567792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569443_1571246_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571363_1572014_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572112_1573063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1618235	1673826	4105334	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618235_1619186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619244_1620018_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620010_1621567_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621563_1622514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623840_1624443_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624682_1625384_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625377_1626160_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626344_1627295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627393_1628131_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628320_1629079_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629125_1630115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630292_1631261_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632800_1633769_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633777_1634719_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635192_1636203_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636193_1637708_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637704_1639051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639053_1640088_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640137_1641763_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642315_1643266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643370_1644318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644371_1646186_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646178_1646853_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646982_1650057_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650070_1650370_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650684_1651308_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651551_1652421_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652398_1653343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653428_1654355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654467_1655247_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655237_1656434_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656464_1657415_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657636_1658326_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658390_1659146_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659197_1660190_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660199_1661153_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661268_1662231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663632_1664061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664057_1665008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665301_1666024_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666462_1667650_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667653_1668004_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669753_1670725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670738_1671452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671456_1672374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672480_1672777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672875_1673826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1831592	1890862	4105334	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831592_1832543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832667_1833477_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833677_1834628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835901_1837119_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838175_1839078_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839154_1840027_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840157_1840526_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840583_1841630_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841825_1843082_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843086_1844424_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844573_1845530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845632_1846565_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846680_1847001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846993_1847353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847400_1848975_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849027_1849972_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849989_1850820_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850812_1852447_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852443_1853799_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854705_1856283_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856286_1857561_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857658_1858033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859748_1860882_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860919_1861525_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861521_1862340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862411_1865036_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865022_1865277_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865343_1865925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866228_1866489_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866654_1867278_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867277_1868051_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868047_1869256_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869281_1869755_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869828_1870779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870877_1871828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871926_1873276_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874041_1874797_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874889_1877772_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878094_1878520_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878547_1879696_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879692_1880199_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880214_1881501_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881550_1882846_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882847_1883486_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883491_1884649_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884675_1886031_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886034_1887105_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887243_1887480_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887567_1888674_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888639_1889944_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889962_1890862_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1901102	1944376	4105334	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901102_1902053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902151_1903102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903301_1904387_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904402_1905164_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905160_1906084_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906182_1906707_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906715_1907459_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907554_1907794_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907807_1907960_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908045_1909536_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909627_1910566_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910562_1910739_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910741_1911404_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913025_1913169_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913165_1914140_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914034_1914289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914306_1915257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915253_1916528_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916631_1917825_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917821_1918475_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918471_1919908_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919895_1920255_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921069_1921210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921227_1922178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922174_1924040_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924297_1925818_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925905_1926556_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927504_1928800_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928821_1929706_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929804_1930680_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930669_1931026_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931156_1932131_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932260_1932440_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932537_1933062_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933072_1933909_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934021_1934393_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934389_1934941_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934956_1936648_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936696_1937377_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937624_1938089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938258_1939188_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939200_1939848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939921_1941739_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941822_1942773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943425_1944376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	1974149	2038518	4105334	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974149_1975100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975321_1976272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976370_1977336_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977473_1978373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980967_1982455_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982465_1983662_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983734_1985054_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985050_1985926_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985956_1987105_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987122_1987437_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987458_1988181_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988180_1988999_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989003_1989531_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989536_1990793_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991151_1992291_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992368_1993241_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994111_1995062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995021_1995657_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996016_1997339_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997657_1998479_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999903_2000476_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000515_2002345_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002307_2003366_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003403_2003865_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003949_2004696_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006186_2009417_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009483_2010815_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011067_2011442_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011544_2012723_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012733_2013324_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013434_2014241_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014266_2015061_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016061_2017036_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017194_2017707_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017863_2018835_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020579_2021386_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021382_2022684_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022634_2023399_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023512_2024283_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024367_2025555_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025627_2026002_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026102_2027365_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027361_2028219_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028391_2029393_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029844_2030795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032358_2033510_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033878_2034115_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034178_2034346_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034459_2036355_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036518_2037469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037567_2038518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2170047	2219700	4105334	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170047_2170998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171096_2173091_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173150_2174116_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174105_2176967_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176969_2177476_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177580_2178789_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178790_2179729_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179890_2180364_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180360_2181311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181421_2181862_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181990_2183220_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183258_2184080_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184133_2185285_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185376_2185865_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188415_2190965_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191035_2193609_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193874_2194075_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194106_2194268_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194325_2194664_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194812_2195763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196537_2197206_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197187_2199143_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199385_2200135_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200147_2201011_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201014_2202430_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202563_2203292_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203430_2203631_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203806_2204205_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204228_2205629_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205747_2206500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206788_2207466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207492_2208272_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208268_2209153_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209170_2209950_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209934_2210693_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210830_2211466_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211733_2212750_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212847_2213888_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214022_2215315_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216674_2217058_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217075_2217663_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217700_2218651_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218749_2219700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2476007	2534251	4105334	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476007_2476958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477437_2478094_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478108_2479776_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479778_2480408_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480619_2481714_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481858_2482671_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482674_2484258_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484428_2485559_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485745_2486822_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486903_2487554_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487568_2488972_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489255_2490074_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490070_2490775_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491674_2492790_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492823_2493198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493220_2494378_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494390_2494624_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495258_2498228_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498242_2498452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498603_2499233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499229_2501287_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501343_2502024_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502020_2502581_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502587_2503685_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503837_2504431_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504427_2505720_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505733_2506276_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506285_2507122_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507155_2508217_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508258_2509311_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509326_2509629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509770_2510721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510738_2510903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510899_2512594_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512590_2513676_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513723_2514623_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514633_2515278_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516299_2519542_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519552_2520707_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520933_2521896_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521994_2522945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523043_2523994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524003_2524693_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524752_2525190_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525235_2526129_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526176_2527349_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527345_2528500_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528696_2529047_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529036_2529471_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529487_2530438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530585_2531053_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531033_2532191_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532256_2533183_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533300_2534251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2576529	2643029	4105334	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576529_2577480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577849_2578422_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578424_2579435_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579427_2579928_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579938_2580280_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580348_2581083_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581099_2581369_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581391_2582180_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582226_2583243_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583459_2584902_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585080_2586700_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586820_2588641_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588719_2590252_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590285_2591932_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592001_2593024_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593041_2594175_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594177_2594867_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594866_2595652_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595695_2596460_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596498_2597920_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597985_2598690_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598737_2599157_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599169_2599577_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599760_2600471_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600597_2600888_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600905_2601388_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605893_2607048_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607353_2608370_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608616_2609405_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609471_2610152_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610148_2610919_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611017_2611968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612023_2612941_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612951_2614130_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614149_2615145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616733_2617342_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617329_2618370_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618387_2619350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619346_2620540_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620536_2621334_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621359_2622346_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622364_2624404_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624605_2625286_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625299_2626211_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626207_2626786_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626924_2627830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627837_2631257_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631244_2633845_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634800_2635433_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635826_2636585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636581_2637784_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637971_2638922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639829_2640975_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640961_2641717_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641833_2642013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642078_2643029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2806634	2861151	4105334	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806634_2807585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807913_2808519_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808572_2809886_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809960_2810431_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810430_2811219_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811229_2812882_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812969_2813920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815081_2815588_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815584_2816349_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816364_2816649_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816713_2817703_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817874_2818804_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818775_2819462_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819495_2820041_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820085_2821351_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821347_2822250_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823431_2824376_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824470_2825988_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826029_2827658_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827765_2828647_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831759_2832134_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832158_2832497_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832540_2834175_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834213_2835560_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835667_2837089_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837158_2837743_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837845_2838796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838930_2840037_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840047_2841145_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841289_2842495_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842501_2843023_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843019_2843502_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843507_2843759_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843739_2844225_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844360_2847822_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847839_2848724_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848733_2849165_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849411_2849915_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849992_2851393_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851467_2852343_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852339_2853347_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853814_2854120_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854210_2854801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854991_2856008_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856199_2858536_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858618_2859053_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859151_2860102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860200_2861151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2869176	2925962	4105334	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869176_2870127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871833_2872100_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872807_2873146_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877699_2878302_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878398_2879688_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879745_2880477_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880473_2881277_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881273_2882362_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882358_2883288_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883436_2884582_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884603_2885554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885571_2885730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885884_2889706_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889862_2890531_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890535_2892209_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892227_2893547_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893551_2895867_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895922_2898091_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898087_2903268_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903366_2903681_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903908_2904154_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904248_2904767_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904866_2906072_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906187_2907585_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907701_2908280_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908352_2909744_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909911_2910862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911142_2911763_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911759_2912173_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912169_2913213_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913268_2913457_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913466_2914231_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914321_2914978_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915069_2915828_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915853_2917455_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917655_2918660_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918760_2919024_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919141_2919918_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920508_2921459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923842_2924955_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925011_2925962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	2956348	3000039	4105334	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956348_2957299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957316_2957466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957419_2958316_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960593_2962819_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962983_2964072_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964028_2964682_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964729_2965527_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966058_2967009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967089_2968238_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968294_2969245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969343_2969649_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969677_2970112_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970113_2971358_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971354_2972065_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972079_2972991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973353_2973758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973754_2974213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974219_2975128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975124_2975991_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975977_2976805_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976815_2977943_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979020_2980259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980300_2981563_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981569_2982322_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982373_2982559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982834_2983299_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983330_2983990_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984134_2986243_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986239_2987190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987293_2987914_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988017_2988758_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989892_2991017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991062_2991431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991672_2992623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993658_2994201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994398_2994569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994586_2995537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995533_2996442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996568_2997405_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997917_2999027_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999088_3000039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	3379985	3433726	4105334	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379985_3380936_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381340_3381985_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382009_3382594_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382694_3383312_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383314_3385030_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385026_3385335_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385351_3385969_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386013_3386316_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386416_3387271_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387458_3387683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387852_3388125_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388542_3388950_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389319_3390114_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390214_3391450_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391518_3392535_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392546_3393923_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393919_3395116_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395112_3396651_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396647_3397907_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399847_3400798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401564_3402659_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402651_3403986_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403939_3404623_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404648_3405812_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405808_3406810_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406809_3407682_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407678_3408428_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408424_3409216_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409212_3410352_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410627_3411413_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411446_3412229_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412232_3412622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413761_3414625_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414660_3415749_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415745_3416696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417049_3420028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420954_3421833_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423781_3424732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424728_3425196_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425238_3426009_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426029_3426830_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426840_3428250_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428344_3429130_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429369_3430386_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430493_3430886_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431023_3431704_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431708_3432680_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432775_3433726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	3439881	3499179	4105334	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439881_3441645_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441756_3442635_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442747_3443563_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443566_3443818_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443902_3444919_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445249_3445471_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447831_3448749_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449246_3450455_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450534_3452106_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452223_3453159_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453347_3454292_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454859_3460577_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460582_3461710_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461765_3462392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462663_3463680_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463775_3464486_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464482_3465472_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465567_3467199_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467201_3467939_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468094_3468967_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469316_3470456_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470452_3471112_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471183_3471816_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471845_3472364_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472374_3473484_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473530_3474385_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474386_3475289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476511_3477462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479216_3480206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480381_3481170_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481166_3482198_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482216_3482780_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482835_3484356_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484619_3485324_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485331_3486060_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486174_3486549_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486591_3487881_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487877_3489047_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489043_3489883_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489942_3490878_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490890_3491841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491939_3492902_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492933_3493293_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493417_3494320_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494321_3496094_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496128_3496905_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498228_3499179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	3514117	3572190	4105334	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514117_3515068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515196_3516330_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516373_3517279_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517281_3518982_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518978_3519899_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519906_3520884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520942_3521977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523951_3524188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524314_3525178_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525266_3526088_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526167_3526905_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526901_3527894_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3528046_3528670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528714_3529863_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532186_3533137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533477_3534428_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534526_3535477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535773_3536271_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536313_3538089_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538096_3538963_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538969_3539704_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540873_3541668_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541957_3542548_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542581_3543910_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543984_3545130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545241_3546240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546202_3546637_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548153_3549038_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549034_3550240_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550236_3551097_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551209_3553000_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553040_3553685_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553706_3554015_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554180_3555467_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556900_3557851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559802_3561017_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561122_3562112_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562108_3562717_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562729_3563359_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563355_3563976_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564007_3564799_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565650_3566106_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566124_3567051_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567104_3568391_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569321_3570194_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570190_3571141_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571239_3572190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011698	Bordetella pertussis strain H764 chromosome, complete genome	4105334	4004402	4069314	4105334	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004402_4004888_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004976_4005114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005106_4006087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006353_4007163_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007202_4007883_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007876_4008335_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008346_4008709_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008791_4009475_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009530_4009839_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009857_4010172_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010168_4012643_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012650_4014042_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014038_4014224_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014202_4014904_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014900_4015722_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015702_4016827_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016819_4017839_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018044_4018935_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019179_4019971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020053_4020428_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020405_4021815_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021807_4023190_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023524_4025129_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025206_4026178_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026188_4027115_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027505_4028456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028625_4029852_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030051_4030918_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030910_4031873_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031973_4032924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033022_4033973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034071_4035022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035018_4036512_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036508_4039616_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039612_4042681_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042677_4043928_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044108_4044861_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044902_4045547_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045555_4046536_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046635_4047379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047461_4047809_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047906_4048749_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048793_4049681_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049707_4049896_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049993_4051451_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051437_4052964_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052982_4053450_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053449_4054472_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054592_4055333_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055387_4056488_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056489_4057680_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057799_4058816_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059134_4059806_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059802_4060711_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060922_4061570_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065430_4066498_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066508_4067318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067407_4068181_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068181_4068346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068363_4069314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
