The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	27282	70036	4106385	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	77634	136108	4106385	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	164894	225405	4106385	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	233337	286925	4106385	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	391906	449415	4106385	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	590420	651610	4106385	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624028_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639096_640449_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647292_648165_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	656934	703125	4106385	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	709291	763220	4106385	tRNA,transposase	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	885809	953785	4106385	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	997314	1069831	4106385	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010246_1010861_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011047_1013108_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023159_1024335_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036190_1036832_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048701_1049025_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050628_1051576_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054643_1056350_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063939_1064827_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1073584	1135660	4106385	tRNA,holin,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081511_1082462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083664_1085086_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085349_1086066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086150_1086468_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086923_1087283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087325_1088870_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088953_1089784_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089818_1090973_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091015_1091888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092004_1094293_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095499_1095964_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096958_1097096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110494_1110746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113726_1114434_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117991_1118450_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118486_1119800_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119817_1120189_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120185_1121649_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121789_1122518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122499_1125349_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125561_1126512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1153230	1219750	4106385	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158627_1159260_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159425_1161708_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161862_1164559_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164684_1165173_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170499_1171714_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173468_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174572_1175331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176317_1177268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178435_1179158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182072_1184448_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186749_1187544_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191169_1191907_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192757_1193294_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193326_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193656_1194502_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194540_1195920_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196977_1197928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198442_1199297_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201527_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202530_1203310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205319_1207017_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208511_1209258_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215186_1215540_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215623_1216613_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216815_1217766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218799_1219750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1270678	1327889	4106385	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1270678_1271629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275375_1275987_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276209_1277670_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277766_1279359_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279712_1279970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279971_1281312_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281407_1282097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282109_1283540_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285264_1286086_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286096_1287668_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287696_1288674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288700_1289504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289500_1290295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290302_1291538_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291551_1291965_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292714_1293665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294286_1296014_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296125_1297484_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297776_1298727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298767_1299838_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299860_1300739_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300910_1301882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302044_1302887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303048_1303729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303722_1304892_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304888_1305920_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305987_1307205_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307239_1308772_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308852_1309476_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309506_1310118_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310153_1310624_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311055_1312060_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312096_1313611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313614_1314574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314602_1315406_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315407_1317042_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317125_1318187_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318385_1318655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318658_1319183_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319598_1320549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320545_1321580_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321688_1322327_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322621_1322849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322971_1323685_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323929_1324880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325019_1325265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325379_1326828_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326938_1327889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1418122	1470275	4106385	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418122_1419073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419239_1419593_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419605_1419968_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420009_1420435_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420637_1421894_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422092_1423073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423222_1424464_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424562_1425513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425521_1426217_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429038_1429638_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429648_1431814_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431837_1433622_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433621_1433711_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434405_1434678_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434677_1436744_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436740_1437691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437789_1438740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438855_1439188_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439184_1439871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439857_1440817_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440849_1443219_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443218_1443851_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443952_1445293_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445339_1446695_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446985_1447222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447409_1447727_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447999_1448515_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448785_1449541_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449879_1450086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450093_1450753_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451047_1453252_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453362_1454586_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454708_1455683_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455750_1456944_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456958_1457759_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457755_1459612_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459608_1460214_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460232_1461618_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462343_1463570_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463658_1464441_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464539_1465490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465516_1466290_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466301_1467543_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469324_1470275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1514200	1574114	4106385	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1514200_1514689_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514806_1515385_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515490_1515859_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515957_1516908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516914_1518027_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518713_1519916_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520119_1522780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077078454.1|1522792_1526197_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526864_1529090_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529136_1529463_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529513_1530122_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530220_1531171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1531269_1532220_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532289_1533054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533050_1533587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533753_1534605_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534664_1535291_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535287_1536238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536336_1537449_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537438_1538440_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538545_1540057_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540053_1541358_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541469_1542030_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542297_1542852_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543307_1543523_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543777_1546375_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546371_1547559_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548219_1548834_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548922_1550044_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550061_1550967_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551859_1552810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552991_1553744_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553812_1554472_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554468_1555197_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555209_1557489_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557513_1557717_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557758_1558391_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558526_1559444_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559440_1560154_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560391_1561162_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561166_1561766_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562010_1563501_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563559_1563844_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564409_1565336_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565472_1566213_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566379_1567756_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567937_1568843_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570494_1572297_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572414_1573065_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573163_1574114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1619286	1674877	4106385	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619286_1620237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620295_1621069_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621061_1622618_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622614_1623565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624891_1625494_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625733_1626435_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626428_1627211_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627395_1628346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628444_1629182_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629371_1630130_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630176_1631166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631343_1632312_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633851_1634820_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634828_1635770_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636243_1637254_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637244_1638759_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638755_1640102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640104_1641139_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641188_1642814_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643366_1644317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644421_1645369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645422_1647237_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647229_1647904_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648033_1651108_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651121_1651421_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651735_1652359_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652602_1653472_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653449_1654394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654479_1655406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655518_1656298_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656288_1657485_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657515_1658466_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658687_1659377_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659441_1660197_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660248_1661241_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661250_1662204_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662319_1663282_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664683_1665112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665108_1666059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666352_1667075_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667513_1668701_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668704_1669055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670804_1671776_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671789_1672503_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672507_1673425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673531_1673828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673926_1674877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1832644	1891914	4106385	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832644_1833595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833719_1834529_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1834729_1835680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836953_1838171_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839227_1840130_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840206_1841079_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841209_1841578_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841635_1842682_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842877_1844134_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844138_1845476_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845625_1846582_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846684_1847617_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847732_1848053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1848045_1848405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848452_1850027_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850079_1851024_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851041_1851872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851864_1853499_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853495_1854851_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855757_1857335_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857338_1858613_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858710_1859085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860800_1861934_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861971_1862577_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862573_1863392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863463_1866088_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866074_1866329_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866395_1866977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867280_1867541_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867706_1868330_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868329_1869103_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869099_1870308_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870333_1870807_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870880_1871831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871929_1872880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872978_1874328_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875093_1875849_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875941_1878824_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879146_1879572_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879599_1880748_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880744_1881251_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881266_1882553_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882602_1883898_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883899_1884538_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884543_1885701_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885727_1887083_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887086_1888157_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888295_1888532_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888619_1889726_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889691_1890996_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891014_1891914_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1902154	1945428	4106385	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1902154_1903105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903203_1904154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904353_1905439_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905454_1906216_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906212_1907136_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1907234_1907759_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907767_1908511_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908606_1908846_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908859_1909012_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909097_1910588_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910679_1911618_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911614_1911791_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911793_1912456_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914077_1914221_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914217_1915192_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1915358_1916309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916305_1917580_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917683_1918877_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918873_1919527_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919523_1920960_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920947_1921307_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922121_1922262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922279_1923230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923226_1925092_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925349_1926870_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926957_1927608_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928556_1929852_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929873_1930758_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930856_1931732_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931721_1932078_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932208_1933183_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933312_1933492_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933589_1934114_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934124_1934961_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935073_1935445_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935441_1935993_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936008_1937700_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937748_1938429_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938676_1939141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939310_1940240_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940252_1940900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940973_1942791_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942874_1943825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944477_1945428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	1975201	2039570	4106385	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975201_1976152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976373_1977324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977422_1978388_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978525_1979425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982019_1983507_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983517_1984714_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984786_1986106_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986102_1986978_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987008_1988157_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988174_1988489_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988510_1989233_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989232_1990051_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990055_1990583_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990588_1991845_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992203_1993343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993420_1994293_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995163_1996114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996073_1996709_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997068_1998391_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998709_1999531_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000955_2001528_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001567_2003397_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003359_2004418_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004455_2004917_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005001_2005748_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007238_2010469_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010535_2011867_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012119_2012494_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012596_2013775_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013785_2014376_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014486_2015293_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015318_2016113_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017113_2018088_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018246_2018759_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018915_2019887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021631_2022438_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022434_2023736_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023686_2024451_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024564_2025335_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025419_2026607_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026679_2027054_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027154_2028417_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028413_2029271_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029443_2030445_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030896_2031847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033410_2034562_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034930_2035167_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035230_2035398_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035511_2037407_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037570_2038521_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038619_2039570_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2171099	2220752	4106385	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171099_2172050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172148_2174143_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174202_2175168_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175157_2178019_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178021_2178528_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178632_2179841_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179842_2180781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180942_2181416_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181412_2182363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182473_2182914_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183042_2184272_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184310_2185132_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185185_2186337_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186428_2186917_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189467_2192017_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192087_2194661_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194926_2195127_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195158_2195320_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195377_2195716_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195864_2196815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197589_2198258_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198239_2200195_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200437_2201187_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201199_2202063_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202066_2203482_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203615_2204344_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204482_2204683_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204858_2205257_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205280_2206681_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206799_2207552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207840_2208518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208544_2209324_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209320_2210205_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210222_2211002_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210986_2211745_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211882_2212518_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212785_2213802_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213899_2214940_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215074_2216367_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217726_2218110_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218127_2218715_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218752_2219703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219801_2220752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2477058	2535302	4106385	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2477058_2478009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478488_2479145_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479159_2480827_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480829_2481459_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481670_2482765_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482909_2483722_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483725_2485309_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485479_2486610_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486796_2487873_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487954_2488605_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488619_2490023_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490306_2491125_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491121_2491826_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492725_2493841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493874_2494249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494271_2495429_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495441_2495675_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496309_2499279_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499293_2499503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499654_2500284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500280_2502338_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502394_2503075_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503071_2503632_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503638_2504736_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504888_2505482_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505478_2506771_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506784_2507327_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507336_2508173_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508206_2509268_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509309_2510362_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510377_2510680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510821_2511772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511950_2513645_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513641_2514727_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514774_2515674_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515684_2516329_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517350_2520593_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520603_2521758_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521984_2522947_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523045_2523996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524094_2525045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525054_2525744_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525803_2526241_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526286_2527180_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527227_2528400_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528396_2529551_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529747_2530098_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530087_2530522_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530538_2531489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531636_2532104_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532084_2533242_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533307_2534234_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534351_2535302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2577580	2644080	4106385	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577580_2578531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578900_2579473_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579475_2580486_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580478_2580979_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580989_2581331_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581399_2582134_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582150_2582420_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582442_2583231_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583277_2584294_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584510_2585953_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586131_2587751_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587871_2589692_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589770_2591303_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591336_2592983_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593052_2594075_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594092_2595226_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595228_2595918_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595917_2596703_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596746_2597511_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597549_2598971_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599036_2599741_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599788_2600208_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600220_2600628_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600811_2601522_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601648_2601939_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601956_2602439_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606944_2608099_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608404_2609421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609667_2610456_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610522_2611203_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611199_2611970_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612068_2613019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613074_2613992_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614002_2615181_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615200_2616196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617784_2618393_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618380_2619421_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619438_2620401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620397_2621591_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621587_2622385_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622410_2623397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623415_2625455_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625656_2626337_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626350_2627262_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627258_2627837_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627975_2628881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628888_2632308_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632295_2634896_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635851_2636484_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636877_2637636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637632_2638835_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639022_2639973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640880_2642026_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642012_2642768_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642884_2643064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643129_2644080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2807685	2862202	4106385	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807685_2808636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808964_2809570_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809623_2810937_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811011_2811482_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811481_2812270_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812280_2813933_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814020_2814971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816132_2816639_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816635_2817400_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817415_2817700_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817764_2818754_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818925_2819855_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819826_2820513_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820546_2821092_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821136_2822402_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822398_2823301_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824482_2825427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825521_2827039_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827080_2828709_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828816_2829698_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832810_2833185_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833209_2833548_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833591_2835226_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835264_2836611_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836718_2838140_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838209_2838794_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838896_2839847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839981_2841088_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841098_2842196_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842340_2843546_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843552_2844074_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844070_2844553_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844558_2844810_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844790_2845276_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845411_2848873_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848890_2849775_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849784_2850216_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850462_2850966_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851043_2852444_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852518_2853394_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853390_2854398_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854865_2855171_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855261_2855852_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856042_2857059_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857250_2859587_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859669_2860104_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860202_2861153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861251_2862202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2870227	2927014	4106385	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870227_2871178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872884_2873151_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873858_2874197_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878751_2879354_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879450_2880740_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880797_2881529_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881525_2882329_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882325_2883414_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883410_2884340_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884488_2885634_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885655_2886606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886936_2890758_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890914_2891583_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891587_2893261_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893279_2894599_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894603_2896919_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896974_2899143_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899139_2904320_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904418_2904733_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904960_2905206_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905300_2905819_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905918_2907124_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907239_2908637_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908753_2909332_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909404_2910796_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910963_2911914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912194_2912815_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912811_2913225_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913221_2914265_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914320_2914509_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914518_2915283_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915373_2916030_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916121_2916880_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916905_2918507_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918707_2919712_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919812_2920076_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920193_2920970_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921560_2922511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924894_2926007_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926063_2927014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	2957399	3001090	4106385	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2957399_2958350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958470_2959367_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961644_2963870_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964034_2965123_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965079_2965733_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965780_2966578_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967109_2968060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968140_2969289_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969345_2970296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970394_2970700_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970728_2971163_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971164_2972409_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972405_2973116_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973130_2974042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974404_2974809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974805_2975264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975270_2976179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976175_2977042_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977028_2977856_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977866_2978994_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980071_2981310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981351_2982614_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982620_2983373_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983424_2983610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983885_2984350_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984381_2985041_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985185_2987294_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987290_2988241_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988344_2988965_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989068_2989809_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990943_2992068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992113_2992482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992723_2993674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994709_2995252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995449_2995620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995637_2996588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996584_2997493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997619_2998456_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998968_3000078_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3000139_3001090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	3381036	3434777	4106385	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381036_3381987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382391_3383036_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383060_3383645_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383745_3384363_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384365_3386081_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386077_3386386_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386402_3387020_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387064_3387367_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387467_3388322_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388509_3388734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388903_3389176_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389593_3390001_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390370_3391165_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391265_3392501_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392569_3393586_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393597_3394974_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394970_3396167_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396163_3397702_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397698_3398958_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400898_3401849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402615_3403710_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403702_3405037_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404990_3405674_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405699_3406863_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406859_3407861_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407860_3408733_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408729_3409479_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409475_3410267_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410263_3411403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411678_3412464_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412497_3413280_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413283_3413673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414812_3415676_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415711_3416800_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416796_3417747_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418100_3421079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422005_3422884_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424832_3425783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425779_3426247_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426289_3427060_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427080_3427881_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427891_3429301_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429395_3430181_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430420_3431437_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431544_3431937_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432074_3432755_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432759_3433731_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433826_3434777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	3440932	3500230	4106385	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440932_3442696_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442807_3443686_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443798_3444614_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444617_3444869_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444953_3445970_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446300_3446522_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448882_3449800_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450297_3451506_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451585_3453157_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453274_3454210_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454398_3455343_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455910_3461628_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461633_3462761_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462816_3463443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463714_3464731_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464826_3465537_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465533_3466523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466618_3468250_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468252_3468990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469145_3470018_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470367_3471507_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471503_3472163_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472234_3472867_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472896_3473415_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473425_3474535_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474581_3475436_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475437_3476340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477562_3478513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480267_3481257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481432_3482221_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482217_3483249_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483267_3483831_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483886_3485407_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485670_3486375_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486382_3487111_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487225_3487600_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487642_3488932_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488928_3490098_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490094_3490934_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490993_3491929_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491941_3492892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492990_3493953_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493984_3494344_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494468_3495371_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495372_3497145_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497179_3497956_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499279_3500230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	3515168	3573241	4106385	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515168_3516119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516247_3517381_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517424_3518330_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518332_3520033_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520029_3520950_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520957_3521935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521993_3523028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3525002_3525239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525365_3526229_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526317_3527139_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527218_3527956_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527952_3528945_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529097_3529721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529765_3530914_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533237_3534188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534528_3535479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535577_3536528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536824_3537322_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537364_3539140_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539147_3540014_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540020_3540755_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541924_3542719_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543008_3543599_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543632_3544961_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545035_3546181_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546292_3547291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547253_3547688_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549204_3550089_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550085_3551291_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551287_3552148_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552260_3554051_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554091_3554736_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554757_3555066_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555231_3556518_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557951_3558902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560853_3562068_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562173_3563163_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563159_3563768_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563780_3564410_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564406_3565027_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565058_3565850_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566701_3567157_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567175_3568102_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568155_3569442_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570372_3571245_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571241_3572192_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572290_3573241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011700	Bordetella pertussis strain H768 chromosome, complete genome	4106385	4005453	4070365	4106385	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005453_4005939_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006027_4006165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006157_4007138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007404_4008214_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008253_4008934_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008927_4009386_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009397_4009760_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009842_4010526_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010581_4010890_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010908_4011223_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011219_4013694_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013701_4015093_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015089_4015275_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015253_4015955_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015951_4016773_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016753_4017878_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017870_4018890_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019095_4019986_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020230_4021022_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021104_4021479_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021456_4022866_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022858_4024241_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024575_4026180_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026257_4027229_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027239_4028166_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028556_4029507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029676_4030903_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031102_4031969_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031961_4032924_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033024_4033975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034073_4035024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035122_4036073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036069_4037563_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037559_4040667_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040663_4043732_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043728_4044979_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045159_4045912_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045953_4046598_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046606_4047587_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047686_4048430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048512_4048860_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048957_4049800_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049844_4050732_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050758_4050947_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051044_4052502_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052488_4054015_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054033_4054501_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054500_4055523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055643_4056384_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056438_4057539_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057540_4058731_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058850_4059867_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060185_4060857_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060853_4061762_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061973_4062621_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066481_4067549_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067559_4068369_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068458_4069232_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069414_4070365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
