The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	27282	70036	4106327	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	77634	136108	4106327	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	164893	225404	4106327	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	233336	286924	4106327	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	390857	448366	4106327	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	590420	704175	4106327	tail,transposase,tRNA,protease,terminase	uncultured_Caudovirales_phage(14.81%)	113	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_005013747.1|623491_624442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625078_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640146_641499_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648342_649215_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652743_653103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653484_654522_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654838_656179_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|656188_656641_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656737_657919_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692906_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	710341	764271	4106327	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762790_763198_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	886860	954836	4106327	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907857_908064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938654_938870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077082435.1|939427_940378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	998365	1070882	4106327	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012098_1014159_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1074635	1135662	4106327	tRNA,holin,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117898_1118039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126681_1127506_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127505_1128384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129288_1130404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130432_1131227_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131223_1133089_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133167_1133800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133796_1134099_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134141_1135662_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1153232	1219751	4106327	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153232_1155029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155028_1155997_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156066_1156912_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156979_1157534_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158629_1159262_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159426_1161709_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161863_1164560_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164685_1165174_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167584_1170455_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170500_1171715_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171944_1173372_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173469_1174561_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174573_1175332_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175419_1176322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176318_1177269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177398_1178382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178436_1179159_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180637_1181993_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182073_1184449_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184613_1186689_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186750_1187545_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187652_1188615_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188602_1189358_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189465_1191103_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191170_1191908_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192010_1192586_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192758_1193295_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193327_1193642_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193657_1194503_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194541_1195921_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195998_1196880_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196978_1197929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197925_1198336_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198443_1199298_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199290_1200253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200298_1201423_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201528_1202407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202531_1203311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203464_1204886_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205320_1207018_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207244_1208186_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208512_1209259_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209266_1210193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210314_1211232_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211271_1212225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212249_1212828_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214501_1215110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215187_1215541_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215624_1216614_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216610_1216799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216816_1217767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217853_1218804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218800_1219751_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1270679	1327890	4106327	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270679_1271630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275376_1275988_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276210_1277671_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277767_1279360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279713_1279971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279972_1281313_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281408_1282098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282110_1283541_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285265_1286087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286097_1287669_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287697_1288675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288701_1289505_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289501_1290296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290303_1291539_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291552_1291966_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292715_1293666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294287_1296015_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296126_1297485_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297541_1297760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297777_1298728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298768_1299839_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299861_1300740_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300911_1301883_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302045_1302888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303049_1303730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303723_1304893_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304889_1305921_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305988_1307206_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307240_1308773_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308853_1309477_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309507_1310119_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310154_1310625_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311056_1312061_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312097_1313612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313615_1314575_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314603_1315407_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315408_1317043_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317126_1318188_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318386_1318656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318659_1319184_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319599_1320550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320546_1321581_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321689_1322328_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322622_1322850_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322972_1323686_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323930_1324881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325020_1325266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325380_1326829_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326939_1327890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1418123	1470276	4106327	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418123_1419074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419091_1419244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419240_1419594_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419606_1419969_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420010_1420436_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420638_1421895_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422093_1423074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423223_1424465_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424563_1425514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425522_1426218_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429039_1429639_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429649_1431815_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431838_1433623_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433622_1433712_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434406_1434679_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434678_1436745_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437790_1438741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438856_1439189_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439185_1439872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439858_1440818_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440850_1443220_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443219_1443852_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443953_1445294_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445340_1446696_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446986_1447223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447410_1447728_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448000_1448516_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448786_1449542_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449880_1450087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450094_1450754_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451048_1453253_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453363_1454587_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454709_1455684_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455751_1456945_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456959_1457760_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457756_1459613_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459609_1460215_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460233_1461619_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462344_1463571_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463659_1464442_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464540_1465491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465517_1466291_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466302_1467544_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469325_1470276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1514201	1582287	4106327	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516915_1518028_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518714_1519917_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520120_1522781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522793_1526198_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526865_1529091_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529137_1529464_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529514_1530123_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532002_1532539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535288_1536401_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536390_1537392_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537497_1539009_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539005_1540310_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540421_1540982_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541249_1541804_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542259_1542475_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542729_1545327_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545323_1546511_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547169_1547784_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547872_1548994_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549011_1549917_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550809_1551760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551941_1552694_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552762_1553422_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553418_1554147_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554159_1556439_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556463_1556667_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556708_1557341_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557476_1558394_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558390_1559104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559341_1560112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560116_1560716_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560960_1562451_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562509_1562794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563359_1564286_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564422_1565163_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565329_1566706_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566887_1567793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569444_1571247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571364_1572015_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572113_1573064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573085_1574306_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574491_1575904_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575967_1577035_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577034_1578522_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578531_1579476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579635_1580334_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580411_1581317_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581336_1582287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1618236	1673827	4106327	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618236_1619187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619245_1620019_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620011_1621568_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621564_1622515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623841_1624444_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624683_1625385_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625378_1626161_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626345_1627296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627394_1628132_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628321_1629080_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629126_1630116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630293_1631262_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632801_1633770_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633778_1634720_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635193_1636204_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636194_1637709_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637705_1639052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639054_1640089_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640138_1641764_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642316_1643267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643371_1644319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644372_1646187_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646179_1646854_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646983_1650058_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650071_1650371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650685_1651309_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651552_1652422_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652399_1653344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653429_1654356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654468_1655248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655238_1656435_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656465_1657416_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657637_1658327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658391_1659147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659198_1660191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660200_1661154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661269_1662232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663633_1664062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664058_1665009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665302_1666025_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666463_1667651_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667654_1668005_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669754_1670726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670739_1671453_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671457_1672375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672481_1672778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672876_1673827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	1906590	2037134	4106327	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	111	NA	NA
WP_003818515.1|1906590_1909248_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1909325_1910528_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1910524_1911037_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1911159_1911597_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1911873_1912824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1912922_1913873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1914036_1915932_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1916045_1916213_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1916276_1916513_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1916881_1918033_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1919596_1920547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1920998_1922000_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1922172_1923030_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1923026_1924289_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1924389_1924764_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1924836_1926024_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1926108_1926879_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1926992_1927757_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1927707_1929009_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1929005_1929812_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1931556_1932528_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1932684_1933197_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1933355_1934330_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1935330_1936125_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1936150_1936957_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1937067_1937658_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1937668_1938847_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1938949_1939324_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1939576_1940908_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1940974_1944205_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1945695_1946442_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1946526_1946988_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1947025_1948084_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1948046_1949876_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1949915_1950488_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1951912_1952734_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1953052_1954375_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1954734_1955370_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1955329_1956280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1957150_1958023_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1958100_1959240_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1959598_1960855_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1960860_1961388_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1961392_1962211_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1962210_1962933_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1962954_1963269_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1963286_1964435_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1964465_1965341_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1965337_1966657_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1966729_1967926_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1967936_1969424_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1972018_1972918_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1973055_1974021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1974119_1975070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975168_1976119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976340_1977291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|1977287_1977590_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|1977749_1978154_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|1978146_1979373_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|1979369_1979816_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|1979885_1980668_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|1980709_1982215_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|1982500_1983334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|1984771_1985593_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|1985611_1986466_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|1986469_1987441_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|1988125_1988302_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1988787_1989738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1990875_1991172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1991346_1992699_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1992841_1993858_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1995837_1996851_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1996937_1997843_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1997999_1998344_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1998501_1998960_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1998973_2001190_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2001186_2002248_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2002276_2003251_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2003202_2004021_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2004033_2004642_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2004816_2005212_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2005230_2006670_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2006698_2007046_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2007064_2008015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2008667_2009618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2009701_2011519_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2011592_2012240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012252_2013182_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2013351_2013816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2014063_2014744_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2014792_2016484_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2016499_2017051_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2017047_2017419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2017531_2018368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2018378_2018903_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2019000_2019180_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2019309_2020284_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2020414_2020771_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2020760_2021636_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2021734_2022619_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2022640_2023936_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2024884_2025535_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2025622_2027143_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2027400_2029266_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_162268681.1|2030230_2030371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2031185_2031545_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2031532_2032969_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2032965_2033619_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2033615_2034809_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2034912_2036187_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2036183_2037134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2048338	2089029	4106327	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2048338_2049289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2049387_2050338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2050297_2050711_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2050995_2051295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2051704_2053987_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2054672_2056703_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2056722_2056935_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2057212_2057752_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2057865_2059161_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2059237_2060395_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2060578_2061478_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2061496_2062801_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2062766_2063873_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2063960_2064197_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2064335_2065406_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2065409_2066765_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2066791_2067949_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2067954_2068593_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2068594_2069890_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2069939_2071226_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2071241_2071748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2071744_2072893_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2072920_2073346_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2073668_2076551_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2076643_2077399_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2078164_2079514_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2079612_2080563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2080661_2081612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2081685_2082159_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2082184_2083393_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2083389_2084163_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2084162_2084786_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2084951_2085212_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2085515_2086097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2086163_2086418_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2086404_2089029_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2116812	2182361	4106327	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2116812_2117763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2117963_2118773_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2118897_2119848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2119844_2120738_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2120862_2121057_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2121056_2121398_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2121407_2123270_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2123399_2123912_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2123914_2124238_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2124239_2124650_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2124687_2125899_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2125916_2126429_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2126644_2127136_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2127388_2129425_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2129502_2130705_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2130833_2131484_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2133041_2133992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2134562_2134775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2134792_2135524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2135558_2136200_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2136192_2136861_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2139073_2139850_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2139871_2141029_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2141025_2141457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2141453_2142251_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2142270_2142672_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2142738_2143710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2143775_2144999_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2145226_2146177_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2146300_2148754_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2148942_2150247_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2150351_2151005_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2151007_2152318_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2152496_2153075_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2153186_2153387_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2153732_2154299_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2154382_2154586_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2154892_2155213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2155254_2155536_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2155610_2156867_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2157249_2157579_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2159149_2159971_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2159970_2161110_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2161116_2162013_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2162027_2163935_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2164294_2166907_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2166959_2169260_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2169256_2170465_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2170726_2171101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2171097_2172048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172146_2174141_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174200_2175166_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175155_2178017_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178019_2178526_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178630_2179839_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179840_2180779_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180940_2181414_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181410_2182361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2476008	2534252	4106327	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476008_2476959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477438_2478095_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478109_2479777_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479779_2480409_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480620_2481715_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481859_2482672_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482675_2484259_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484429_2485560_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485746_2486823_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486904_2487555_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487569_2488973_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489256_2490075_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490071_2490776_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491675_2492791_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492824_2493199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493221_2494379_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494391_2494625_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495259_2498229_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498243_2498453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498604_2499234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499230_2501288_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501344_2502025_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502021_2502582_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502588_2503686_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503838_2504432_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504428_2505721_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505734_2506277_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506286_2507123_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507156_2508218_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508259_2509312_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509327_2509630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509771_2510722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510739_2510904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510900_2512595_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512591_2513677_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513724_2514624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514634_2515279_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516300_2519543_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519553_2520708_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520934_2521897_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521995_2522946_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523044_2523995_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524004_2524694_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524753_2525191_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_062826531.1|2525236_2526130_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526177_2527350_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527346_2528501_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528697_2529048_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529037_2529472_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529488_2530439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530586_2531054_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531034_2532192_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532257_2533184_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533301_2534252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2576530	2643030	4106327	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576530_2577481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577850_2578423_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578425_2579436_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579428_2579929_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579939_2580281_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580349_2581084_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581100_2581370_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581392_2582181_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582227_2583244_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583460_2584903_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585081_2586701_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586821_2588642_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588720_2590253_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590286_2591933_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592002_2593025_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593042_2594176_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594178_2594868_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594867_2595653_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595696_2596461_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596499_2597921_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597986_2598691_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598738_2599158_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599170_2599578_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599761_2600472_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600598_2600889_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600906_2601389_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605894_2607049_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607354_2608371_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608617_2609406_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609472_2610153_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610149_2610920_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611018_2611969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612024_2612942_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612952_2614131_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614150_2615146_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616734_2617343_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617330_2618371_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618388_2619351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619347_2620541_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620537_2621335_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621360_2622347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622365_2624405_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624606_2625287_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625300_2626212_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626208_2626787_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626925_2627831_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627838_2631258_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631245_2633846_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634801_2635434_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635827_2636586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636582_2637785_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637972_2638923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639830_2640976_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640962_2641718_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641834_2642014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642079_2643030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2805586	2860103	4106327	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2805586_2806537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806865_2807471_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2807524_2808838_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808912_2809383_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809382_2810171_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810181_2811834_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_076879566.1|2811921_2812872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2812970_2813921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815082_2815589_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815585_2816350_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816365_2816650_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816714_2817704_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817875_2818805_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818776_2819463_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819496_2820042_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820086_2821352_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821348_2822251_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823432_2824377_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824471_2825989_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826030_2827659_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827766_2828648_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831760_2832135_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832159_2832498_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832541_2834176_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834214_2835561_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835668_2837090_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837159_2837744_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837846_2838797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838931_2840038_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840048_2841146_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841290_2842496_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842502_2843024_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843020_2843503_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843508_2843760_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843740_2844226_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844361_2847823_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847840_2848725_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848734_2849166_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849412_2849916_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849993_2851394_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851468_2852344_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852340_2853348_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853815_2854121_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854211_2854802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854992_2856009_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856200_2858537_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858619_2859054_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|2859152_2860103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2868128	2924914	4106327	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2868128_2869079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870785_2871052_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871759_2872098_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876651_2877254_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877350_2878640_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878697_2879429_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879425_2880229_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2880225_2881314_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881310_2882240_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882388_2883534_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883555_2884506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2884523_2884682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2884836_2888658_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888814_2889483_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2889487_2891161_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2891179_2892499_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2892503_2894819_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894874_2897043_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2897039_2902220_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902318_2902633_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902860_2903106_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903200_2903719_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903818_2905024_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905139_2906537_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906653_2907232_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907304_2908696_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908863_2909814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910094_2910715_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910711_2911125_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911121_2912165_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912220_2912409_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912418_2913183_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913273_2913930_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2914021_2914780_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914805_2916407_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916607_2917612_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917712_2917976_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918093_2918870_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919460_2920411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922794_2923907_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923963_2924914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	2955300	2998991	4106327	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2955300_2956251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2956268_2956418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2956371_2957268_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2959545_2961771_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961935_2963024_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962980_2963634_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2963681_2964479_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2965010_2965961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2966041_2967190_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2967246_2968197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2968295_2968601_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968629_2969064_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2969065_2970310_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970306_2971017_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2971031_2971943_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972305_2972710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972706_2973165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2973171_2974080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2974076_2974943_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974929_2975757_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975767_2976895_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977972_2979211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2979252_2980515_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980521_2981274_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981325_2981511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981786_2982251_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982282_2982942_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2983086_2985195_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2985191_2986142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2986245_2986866_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2986969_2987710_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988844_2989969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2990014_2990383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990624_2991575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992610_2993153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2993350_2993521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993538_2994489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2994485_2995394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2995520_2996357_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2996869_2997979_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2998040_2998991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	3380976	3434717	4106327	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380976_3381927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382331_3382976_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383000_3383585_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383685_3384303_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384305_3386021_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386017_3386326_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386342_3386960_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387004_3387307_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387407_3388262_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388449_3388674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388843_3389116_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389533_3389941_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390310_3391105_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391205_3392441_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392509_3393526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393537_3394914_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394910_3396107_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396103_3397642_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397638_3398898_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400838_3401789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402555_3403650_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403642_3404977_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404930_3405614_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405639_3406803_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3406799_3407801_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407800_3408673_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408669_3409419_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409415_3410207_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410203_3411343_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411618_3412404_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412437_3413220_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413223_3413613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414752_3415616_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415651_3416740_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416736_3417687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418040_3421019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421945_3422824_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424772_3425723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425719_3426187_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426229_3427000_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427020_3427821_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427831_3429241_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429335_3430121_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430360_3431377_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431484_3431877_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432014_3432695_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432699_3433671_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433766_3434717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	3440872	3500172	4106327	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440872_3442636_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442747_3443626_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443738_3444554_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444557_3444809_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444893_3445910_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446240_3446462_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448822_3449740_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450237_3451446_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451525_3453097_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453214_3454150_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454338_3455283_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455850_3461568_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461573_3462701_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462756_3463383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463654_3464671_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464766_3465477_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465473_3466463_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466558_3468190_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468192_3468930_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469085_3469958_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470307_3471447_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471443_3472103_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472174_3472807_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472836_3473355_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473365_3474475_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474521_3475376_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475377_3476280_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477502_3478453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480209_3481199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481374_3482163_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482159_3483191_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483209_3483773_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483828_3485349_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485612_3486317_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486324_3487053_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487167_3487542_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487584_3488874_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488870_3490040_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490036_3490876_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490935_3491871_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491883_3492834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492932_3493895_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493926_3494286_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494410_3495313_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495314_3497087_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497121_3497898_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499221_3500172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	3515110	3573183	4106327	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515110_3516061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516189_3517323_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517366_3518272_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518274_3519975_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519971_3520892_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520899_3521877_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521935_3522970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524944_3525181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525307_3526171_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526259_3527081_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527160_3527898_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527894_3528887_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529039_3529663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529707_3530856_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533179_3534130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534470_3535421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535519_3536470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536766_3537264_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537306_3539082_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539089_3539956_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539962_3540697_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541866_3542661_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542950_3543541_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543574_3544903_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544977_3546123_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546234_3547233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547195_3547630_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549146_3550031_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550027_3551233_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551229_3552090_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552202_3553993_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554033_3554678_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554699_3555008_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555173_3556460_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557893_3558844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560795_3562010_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562115_3563105_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563101_3563710_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563722_3564352_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564348_3564969_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565000_3565792_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566643_3567099_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567117_3568044_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568097_3569384_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570314_3571187_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571183_3572134_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572232_3573183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011711	Bordetella pertussis strain H878 chromosome, complete genome	4106327	4005395	4070307	4106327	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005395_4005881_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005969_4006107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006099_4007080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007346_4008156_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008195_4008876_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008869_4009328_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009339_4009702_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009784_4010468_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010523_4010832_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010850_4011165_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011161_4013636_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013643_4015035_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015031_4015217_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015195_4015897_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015893_4016715_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016695_4017820_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017812_4018832_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019037_4019928_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020172_4020964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021046_4021421_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021398_4022808_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022800_4024183_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024517_4026122_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026199_4027171_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027181_4028108_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028498_4029449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029618_4030845_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031044_4031911_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031903_4032866_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032966_4033917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034015_4034966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035064_4036015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036011_4037505_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037501_4040609_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040605_4043674_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043670_4044921_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045101_4045854_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045895_4046540_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046548_4047529_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047628_4048372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048454_4048802_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048899_4049742_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049786_4050674_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050700_4050889_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050986_4052444_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052430_4053957_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053975_4054443_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054442_4055465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055585_4056326_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056380_4057481_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057482_4058673_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058792_4059809_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060127_4060799_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060795_4061704_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061915_4062563_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066423_4067491_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067501_4068311_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068400_4069174_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069174_4069339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069356_4070307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
