The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	0	59497	4109547	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	70134	123122	4109547	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	165942	226453	4109547	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	234385	287973	4109547	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_010929591.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	391906	449415	4109547	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929591.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	591469	652659	4109547	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625077_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640145_641498_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648341_649214_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	657983	704174	4109547	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692905_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	710340	764269	4109547	transposase,tRNA	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|714719_716036_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721362_722313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724450_725680_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725682_727125_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727229_728375_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728406_729204_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729228_730788_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730784_733157_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733266_734370_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734369_735062_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735205_735907_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735891_736269_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737000_737951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738110_738983_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739323_739542_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739581_740961_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741002_742400_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742439_744092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744095_744980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744979_745921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745999_747619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747785_748601_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748668_749238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749238_750189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751974_753240_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753397_754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762788_763196_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	887907	955883	4109547	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887907_888924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889120_890104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891702_893091_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893121_894111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894221_895454_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895735_896536_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896558_898790_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899577_900024_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900045_900792_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900935_901913_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902546_903158_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903151_904369_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904509_905460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905456_906176_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906296_908456_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908546_908816_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908904_909111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909109_909637_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909655_910435_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910602_911619_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911691_912183_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912193_913909_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915072_916023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916019_917852_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918250_918910_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919437_920118_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920399_921116_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921130_922432_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924576_927465_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927688_929041_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929069_929591_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929587_931042_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931076_931325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931430_932306_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932331_933387_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933399_934191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934223_935594_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936770_937721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937773_937995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938154_938367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938486_939605_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939701_939917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940110_940362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940474_941425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941421_941805_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941859_943674_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943823_944651_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944696_945677_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945673_945886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945882_947064_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947227_947962_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947963_950576_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950711_952625_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953240_953651_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953748_954834_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954932_955883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	999413	1071931	4109547	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|999413_1000364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000468_1001518_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001655_1002672_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004180_1004753_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004812_1005544_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005595_1006513_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007320_1010500_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010496_1011879_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011948_1012200_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012345_1012960_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013146_1015207_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015336_1016188_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016184_1016811_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016807_1018562_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018854_1021560_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021572_1023234_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023246_1025037_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025258_1026434_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1026476_1027427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027525_1028266_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930132.1|1030515_1031526_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031643_1032837_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032866_1033640_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033636_1034827_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034852_1035791_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035787_1038136_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038290_1038932_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040261_1040414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040445_1040994_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041012_1041498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041675_1042614_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042616_1042934_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042979_1043924_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045604_1046255_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046308_1046644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046640_1047501_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047517_1047799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047872_1048136_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048379_1049330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049628_1050366_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050801_1051125_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051159_1051720_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051840_1052716_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052728_1053676_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053777_1054071_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054097_1056155_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056169_1056670_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056743_1058450_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059313_1060366_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060418_1060808_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060816_1061449_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061548_1062565_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063395_1064403_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064399_1066043_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066039_1066927_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067067_1067541_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067530_1068553_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068549_1069977_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070914_1071931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1075683	1136710	4109547	transposase,holin,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1075683_1076820_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076816_1077890_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078047_1079484_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079574_1080216_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080550_1081567_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084714_1086136_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086399_1087116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087200_1087518_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087558_1087972_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087973_1088333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088375_1089920_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090003_1090834_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090868_1092023_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092065_1092938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093054_1095343_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096549_1097014_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097040_1097991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098008_1098146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098358_1099135_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099179_1100037_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100058_1101075_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101209_1102250_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102444_1104526_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104761_1106255_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106485_1107280_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107500_1108859_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108855_1109698_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109716_1111603_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111544_1111796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111840_1112473_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112491_1113094_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113245_1114196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114776_1115484_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115842_1116829_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116968_1117982_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117978_1118929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119041_1119500_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119536_1120850_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120867_1121239_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121235_1122699_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122839_1123568_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123549_1126399_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126611_1127562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127729_1128554_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128553_1129432_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130336_1131452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131480_1132275_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132271_1134137_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134215_1134848_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134844_1135147_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135189_1136710_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1154280	1219866	4109547	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_023853221.1|1154280_1156077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156076_1157045_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157114_1157960_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158027_1158582_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158628_1159579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159677_1160310_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160474_1162757_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930202.1|1165734_1166223_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168633_1171504_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171549_1172764_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172993_1174421_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174518_1175610_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175622_1176381_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176468_1177371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177367_1178318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178447_1179431_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179485_1180208_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181686_1183042_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183122_1185498_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185662_1187738_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187799_1188594_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188701_1189664_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189651_1190407_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190514_1192152_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192219_1192957_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193059_1193635_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193807_1194344_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194376_1194691_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194706_1195552_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195590_1196970_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197047_1197929_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198027_1198978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198974_1199385_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199492_1200347_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_010930220.1|1201348_1202473_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202578_1203457_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203581_1204361_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204514_1205936_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206370_1208068_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208294_1209236_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209562_1210309_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210316_1211243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211364_1212282_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212321_1213275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213299_1213878_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215551_1216160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216237_1216591_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216674_1217664_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217866_1218817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218915_1219866_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1319001	1384430	4109547	transposase	Planktothrix_phage(33.33%)	53	NA	NA
WP_005012808.1|1319001_1319952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320720_1321359_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322248_1322695_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322776_1323478_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323478_1324246_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324242_1325481_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325480_1326407_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326509_1327625_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327640_1328591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328944_1329526_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329522_1330356_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330566_1331880_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332056_1332938_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332957_1333809_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333861_1334950_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335060_1336188_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336422_1337034_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337132_1338083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338304_1338682_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338829_1339327_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339323_1339851_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339984_1340800_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340812_1341994_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342041_1342935_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343061_1343532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343657_1344485_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344513_1345290_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345286_1345562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345576_1346041_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346052_1346754_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346863_1347364_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347446_1348625_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350252_1350588_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350775_1352224_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352281_1352626_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352732_1353272_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353364_1354315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354413_1355364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355462_1355870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356102_1356534_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356715_1357120_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358356_1358680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358682_1359570_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359602_1360028_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360099_1360453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360692_1361199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361237_1362569_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362628_1363444_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930305.1|1371267_1373022_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373018_1375139_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375143_1377339_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377335_1380677_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383479_1384430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1449027	1504515	4109547	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449027_1449978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451179_1451626_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451618_1453094_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453090_1453846_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453838_1454849_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454838_1456515_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456827_1457160_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457173_1457569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457578_1457905_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457901_1458228_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458154_1459177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459173_1459524_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459571_1460000_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460007_1461381_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461521_1461899_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462161_1463469_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463529_1464360_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464356_1464845_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464886_1466407_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466450_1466927_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467730_1470328_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470357_1471179_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471905_1472655_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472838_1473717_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473814_1474531_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474545_1475106_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475272_1476037_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476056_1476914_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476910_1478110_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478149_1479484_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479536_1481873_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481998_1482562_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482570_1483662_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483733_1484189_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484189_1484984_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484980_1486162_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486148_1486754_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486750_1487524_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487535_1488363_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488524_1490888_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490955_1491675_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491798_1492224_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492258_1493209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493326_1494253_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494318_1495476_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495456_1495924_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496071_1497022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497038_1497473_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497462_1497813_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498009_1499164_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499160_1500333_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500380_1501274_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501319_1501757_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501816_1502506_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502515_1503466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503564_1504515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1599213	1667299	4109547	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1599213_1599702_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599819_1600398_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600503_1600872_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600970_1601921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601927_1603040_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603726_1604929_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605132_1607793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607805_1611210_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611877_1614103_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614149_1614476_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614526_1615135_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615233_1616184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616253_1617018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617014_1617551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617717_1618569_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618628_1619255_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619251_1620202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620300_1621413_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621402_1622404_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622509_1624021_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624017_1625322_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625433_1625994_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626261_1626816_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627271_1627487_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627741_1630339_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630335_1631523_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632181_1632796_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632884_1634006_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634023_1634929_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635821_1636772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636953_1637706_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637774_1638434_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638430_1639159_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639171_1641451_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641475_1641679_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641720_1642353_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642488_1643406_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643402_1644116_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644353_1645124_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645128_1645728_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645972_1647463_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647521_1647806_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648371_1649298_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649434_1650175_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650341_1651718_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651899_1652805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654456_1656259_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656376_1657027_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657125_1658076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658097_1659318_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659503_1660916_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660979_1662047_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662046_1663534_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663543_1664488_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664647_1665346_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665423_1666329_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666348_1667299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1703248	1758839	4109547	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_010931070.1|1703248_1704199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704257_1705031_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705023_1706580_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706576_1707527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708853_1709456_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709695_1710397_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710390_1711173_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711357_1712308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712406_1713144_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713333_1714092_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714138_1715128_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715305_1716274_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717813_1718782_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718790_1719732_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720205_1721216_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721206_1722721_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722717_1724064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724066_1725101_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725150_1726776_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727328_1728279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728383_1729331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729384_1731199_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731191_1731866_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731995_1735070_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735083_1735383_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735697_1736321_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736564_1737434_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737411_1738356_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738441_1739368_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739480_1740260_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740250_1741447_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741477_1742428_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742649_1743339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743403_1744159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744210_1745203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745212_1746166_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746281_1747244_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748645_1749074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749070_1750021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750314_1751037_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751475_1752663_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752666_1753017_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754766_1755738_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755751_1756465_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756469_1757387_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757493_1757790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757888_1758839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	1991605	2061257	4109547	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991605_1994263_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994340_1995543_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995539_1996052_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996174_1996612_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996888_1997839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997937_1998888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999051_2000947_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001060_2001228_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001291_2001528_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001896_2003048_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2004611_2005562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006013_2007015_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007187_2008045_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008041_2009304_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009404_2009779_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009851_2011039_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011123_2011894_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012007_2012772_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012722_2014024_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014020_2014827_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016571_2017543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017699_2018212_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018370_2019345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020345_2021140_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021165_2021972_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022082_2022673_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022683_2023862_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023964_2024339_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024591_2025923_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025989_2029220_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030710_2031457_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031541_2032003_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032040_2033099_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033061_2034891_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034930_2035503_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036927_2037749_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038067_2039390_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039749_2040385_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040344_2041295_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042165_2043038_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043115_2044255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044613_2045870_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045875_2046403_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046407_2047226_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047225_2047948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047969_2048284_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048301_2049450_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049480_2050356_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050352_2051672_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051744_2052941_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052951_2054439_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057033_2057933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058070_2059036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059134_2060085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060306_2061257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2072753	2122149	4109547	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072753_2073704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074841_2075138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075312_2076665_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076807_2077824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079803_2080817_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080903_2081809_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081965_2082310_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082467_2082926_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082939_2085156_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085152_2086214_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086242_2087217_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087168_2087987_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087999_2088608_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088782_2089178_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089196_2090636_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090664_2091012_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091030_2091981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092633_2093584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093667_2095485_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095558_2096206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096218_2097148_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097317_2097782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098029_2098710_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098758_2100450_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100465_2101017_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101013_2101385_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101497_2102334_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102344_2102869_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102966_2103146_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103275_2104250_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104380_2104737_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104726_2105602_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105700_2106585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106606_2107902_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108850_2109501_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109588_2111109_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111366_2113232_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114277_2115228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115245_2115386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116200_2116560_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116547_2117984_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117980_2118634_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118630_2119824_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119927_2121202_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121198_2122149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2133353	2174044	4109547	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133353_2134304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134402_2135353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135312_2135726_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136010_2136310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136719_2139002_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139467_2139662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139687_2141718_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141737_2141950_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142227_2142767_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142880_2144176_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144252_2145410_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145593_2146493_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146511_2147816_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147781_2148888_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148975_2149212_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149350_2150421_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150424_2151780_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151806_2152964_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152969_2153608_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153609_2154905_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154954_2156241_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156256_2156763_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156759_2157908_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157935_2158361_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158683_2161566_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161658_2162414_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163179_2164529_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164627_2165578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165676_2166627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166700_2167174_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167199_2168408_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168404_2169178_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169177_2169801_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169966_2170227_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170530_2171112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171178_2171433_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171419_2174044_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2201827	2267375	4109547	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201827_2202778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202978_2203788_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203912_2204863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204859_2205753_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205877_2206072_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206071_2206413_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206422_2208285_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208414_2208927_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208929_2209253_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209254_2209665_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209702_2210914_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210931_2211444_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211659_2212151_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212403_2214440_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214517_2215720_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215848_2216499_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218056_2219007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219577_2219790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219807_2220539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220573_2221215_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221207_2221876_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224088_2224865_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224886_2226044_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226040_2226472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226468_2227266_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227285_2227687_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227753_2228725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228790_2230014_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230241_2231192_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231315_2233769_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233957_2235262_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235366_2236020_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236022_2237333_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237511_2238090_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238201_2238402_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238747_2239314_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239397_2239601_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239907_2240228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240269_2240551_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240625_2241882_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242264_2242594_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244163_2244985_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244984_2246124_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246130_2247027_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247041_2248949_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249308_2251921_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251973_2254274_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254270_2255479_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255740_2256115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256111_2257062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257160_2259155_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259214_2260180_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260169_2263031_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263033_2263540_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263644_2264853_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264854_2265793_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265954_2266428_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266424_2267375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2536229	2601950	4109547	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536229_2538173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538169_2539090_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539109_2539697_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539689_2540580_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540576_2541338_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541343_2542228_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542250_2544044_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544174_2545662_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545699_2546758_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546757_2547258_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547270_2547870_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547866_2548367_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548368_2549598_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549787_2550027_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550209_2550962_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550963_2551899_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551980_2552967_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552966_2554025_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554081_2554264_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554315_2554909_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555017_2555617_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555613_2556324_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556325_2557153_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558969_2560211_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560222_2560996_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561022_2561973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562071_2562854_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562942_2564169_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564894_2566280_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566298_2566904_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566900_2568757_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568753_2569554_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569568_2570762_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570829_2571804_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571926_2573150_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573260_2575465_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575759_2576419_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576426_2576633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576971_2577727_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2577997_2578513_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578785_2579103_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579290_2579527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579817_2581173_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581219_2582560_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582661_2583294_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583293_2585663_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585695_2586655_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586641_2587328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587324_2587657_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587772_2588723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588821_2589772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589768_2591835_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591834_2592107_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592801_2592891_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592890_2594675_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594698_2596864_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596874_2597474_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600295_2600991_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600999_2601950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2688067	2728737	4109547	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688067_2689018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689128_2689311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689410_2690007_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690190_2691282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691781_2692192_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692250_2692580_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692597_2695015_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695027_2696050_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696124_2696484_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696499_2696697_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697032_2697983_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698177_2698627_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698623_2699574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699684_2701133_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701247_2701493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701632_2702583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702827_2703541_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703663_2703891_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704185_2704824_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704932_2705967_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705963_2706914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707329_2707854_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707857_2708127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708325_2709387_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709470_2711105_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711106_2711910_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711938_2712898_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712901_2714416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2714452_2715715_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2715889_2716360_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716395_2717007_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717037_2717661_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717741_2719274_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719308_2720526_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720593_2721625_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721621_2722791_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722784_2723465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723626_2724469_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724631_2725603_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725774_2726653_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726675_2727746_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727786_2728737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2784202	2857072	4109547	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784202_2784619_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784729_2785362_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785390_2785834_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785855_2786947_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787001_2787802_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787937_2788558_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788697_2789171_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790310_2791261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069122.1|2791257_2798919_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799159_2803206_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803518_2804100_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804096_2805395_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805474_2806503_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806763_2807714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807710_2808661_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808977_2809583_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809636_2810950_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811024_2811495_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811494_2812283_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812293_2813946_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814033_2814984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816145_2816652_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816648_2817413_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817428_2817713_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817777_2818767_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818938_2819868_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819839_2820526_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820559_2821105_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821149_2822415_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822411_2823314_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824495_2825440_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825534_2827052_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827093_2828722_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828829_2829711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832823_2833198_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833222_2833561_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833604_2835239_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835277_2836624_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836731_2838153_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838222_2838807_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838909_2839860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839994_2841101_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841111_2842209_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842353_2843559_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843565_2844087_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844083_2844566_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844571_2844823_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844803_2845289_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845424_2848886_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848903_2849788_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849797_2850229_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850475_2850979_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851056_2852457_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852531_2853407_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853403_2854411_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854878_2855184_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_077102399.1|2855274_2855865_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856055_2857072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2860215	2928076	4109547	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2860215_2861166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861264_2862215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862211_2863006_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863037_2863742_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863816_2864617_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864613_2865021_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865017_2865659_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865651_2867652_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868912_2870244_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870240_2871191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873947_2874214_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874921_2875260_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879813_2880416_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880512_2881802_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881859_2882591_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882587_2883391_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883387_2884476_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884472_2885402_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885550_2886696_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886717_2887668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887998_2891820_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891976_2892645_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892649_2894323_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894341_2895661_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895665_2897981_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898036_2900205_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900201_2905382_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905480_2905795_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906022_2906268_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906362_2906881_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906980_2908186_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908301_2909699_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909815_2910394_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910466_2911858_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912025_2912976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913256_2913877_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913873_2914287_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914283_2915327_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915382_2915571_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915580_2916345_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916435_2917092_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917183_2917942_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917967_2919569_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919769_2920774_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920874_2921138_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921255_2922032_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922622_2923573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925956_2927069_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927125_2928076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	2958461	3002152	4109547	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2958461_2959412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959532_2960429_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962706_2964932_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965096_2966185_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966141_2966795_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966842_2967640_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968171_2969122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969202_2970351_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970407_2971358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971456_2971762_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971790_2972225_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972226_2973471_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973467_2974178_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974192_2975104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975466_2975871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975867_2976326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976332_2977241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977237_2978104_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978090_2978918_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978928_2980056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981133_2982372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982413_2983676_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983682_2984435_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984486_2984672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984947_2985412_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985443_2986103_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986247_2988356_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988352_2989303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989406_2990027_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990130_2990871_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992005_2993130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993175_2993544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993785_2994736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995771_2996314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996699_2997650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997646_2998555_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998681_2999518_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000030_3001140_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001201_3002152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	3384195	3437936	4109547	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384195_3385146_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385550_3386195_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386219_3386804_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386904_3387522_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387524_3389240_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389236_3389545_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389561_3390179_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390223_3390526_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390626_3391481_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391668_3391893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392062_3392335_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392752_3393160_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393529_3394324_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394424_3395660_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395728_3396745_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396756_3398133_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398129_3399326_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399322_3400861_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400857_3402117_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404057_3405008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405774_3406869_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406861_3408196_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408149_3408833_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408858_3410022_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410018_3411020_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411019_3411892_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411888_3412638_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412634_3413426_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413422_3414562_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414837_3415623_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415656_3416439_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416442_3416832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417971_3418835_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418870_3419959_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419955_3420906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421259_3424238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425164_3426043_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427991_3428942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428938_3429406_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429448_3430219_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430239_3431040_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431050_3432460_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432554_3433340_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433579_3434596_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434703_3435096_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435233_3435914_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435918_3436890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436985_3437936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	3444091	3503391	4109547	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3444091_3445855_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445966_3446845_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446957_3447773_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447776_3448028_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448112_3449129_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449459_3449681_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452041_3452959_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453456_3454665_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454744_3456316_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456433_3457369_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457557_3458502_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459069_3464787_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464792_3465920_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465975_3466602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466873_3467890_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467985_3468696_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468692_3469682_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469777_3471409_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471411_3472149_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472304_3473177_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473526_3474666_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474662_3475322_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475393_3476026_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476055_3476574_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476584_3477694_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477740_3478595_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478596_3479499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480721_3481672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483428_3484418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484593_3485382_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485378_3486410_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486428_3486992_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487047_3488568_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488831_3489536_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489543_3490272_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490386_3490761_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490803_3492093_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492089_3493259_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493255_3494095_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494154_3495090_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495102_3496053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496151_3497114_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497145_3497505_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497629_3498532_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498533_3500306_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500340_3501117_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502440_3503391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	3518329	3576402	4109547	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518329_3519280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519408_3520542_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520585_3521491_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521493_3523194_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523190_3524111_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524118_3525096_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525154_3526189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528163_3528400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528526_3529390_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529478_3530300_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530379_3531117_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531113_3532106_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532258_3532882_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532926_3534075_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536398_3537349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537689_3538640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538738_3539689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539985_3540483_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540525_3542301_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542308_3543175_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543181_3543916_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545085_3545880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546169_3546760_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546793_3548122_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548196_3549342_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549453_3550452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550414_3550849_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552365_3553250_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553246_3554452_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554448_3555309_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555421_3557212_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557252_3557897_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557918_3558227_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558392_3559679_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561112_3562063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564014_3565229_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565334_3566324_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566320_3566929_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566941_3567571_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567567_3568188_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568219_3569011_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569862_3570318_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570336_3571263_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571316_3572603_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573533_3574406_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574402_3575353_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575451_3576402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011713	Bordetella pertussis strain H884 chromosome, complete genome	4109547	4008615	4073527	4109547	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4008615_4009101_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009189_4009327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009319_4010300_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010566_4011376_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011415_4012096_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012089_4012548_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012559_4012922_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013004_4013688_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013743_4014052_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014070_4014385_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014381_4016856_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016863_4018255_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018251_4018437_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018415_4019117_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019113_4019935_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019915_4021040_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021032_4022052_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022257_4023148_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023392_4024184_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024266_4024641_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024618_4026028_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026020_4027403_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027737_4029342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029419_4030391_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030401_4031328_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486111.1|4031718_4032669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032838_4034065_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034264_4035131_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035123_4036086_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036186_4037137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037235_4038186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038284_4039235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039231_4040725_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040721_4043829_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043825_4046894_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046890_4048141_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048321_4049074_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049115_4049760_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049768_4050749_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050848_4051592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051674_4052022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052119_4052962_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053006_4053894_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053920_4054109_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054206_4055664_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055650_4057177_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057195_4057663_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057662_4058685_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058805_4059546_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059600_4060701_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060702_4061893_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062012_4063029_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063347_4064019_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064015_4064924_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065135_4065783_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069643_4070711_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070721_4071531_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071620_4072394_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072576_4073527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
