The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	27282	70036	4111608	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	77634	136108	4111608	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	164892	225403	4111608	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	233335	286925	4111608	transposase,tRNA,protease	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265572_266910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	371459	432323	4111608	transposase,tRNA	Caulobacter_phage(16.67%)	57	NA	NA
WP_010929770.1|371459_372914_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|372916_374455_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|374457_374766_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|374996_376040_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|376128_377013_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|376999_377563_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|377576_379529_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|379525_380662_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|380687_381743_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|381753_383247_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|383459_384035_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|384084_384831_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|384830_385733_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|385994_386783_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|386923_387415_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|387411_388155_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|388151_388745_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|388753_389230_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|389354_390293_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|390289_390862_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	469551	587446	4111608	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|469551_470502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|470600_471551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|472273_473548_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|473634_474717_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|474727_475540_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|475576_475903_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|475907_476468_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|476708_477701_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|477719_478715_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|478730_480107_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|480099_482481_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|482497_482887_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|483013_483244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|483348_484299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|484397_485348_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|485344_486217_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|487147_488434_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|488487_489414_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|489432_489888_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|490739_491531_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|491562_492183_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|492179_492809_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|492821_493430_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|493426_494416_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|494521_495736_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|497687_498638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|500071_501358_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|501523_501832_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|501853_502498_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|502538_504329_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|504441_505302_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|505298_506504_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|506500_507385_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|508901_509336_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|509298_510297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|510408_511554_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|511628_512957_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|512990_513581_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|513870_514665_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|515834_516569_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|516575_517442_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|517449_519225_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|519267_519765_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|520061_521012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|521110_522061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|522401_523352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|525675_526824_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|526868_527492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|527644_528637_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|528633_529371_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|529450_530272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|530360_531224_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|531350_531587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|533561_534596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|534654_535632_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|535639_536560_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|536556_538257_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|538259_539165_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|539208_540342_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|540470_541421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|541519_543589_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|543631_545734_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|546040_547117_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|547192_548077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|548259_548682_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|548691_550092_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|550134_551040_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|551138_552680_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|552714_553254_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|553266_553737_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|553874_554117_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|554233_555115_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|555187_555508_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563697_564648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569478_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575332_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585084_586224_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	591860	655693	4111608	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610621_611638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613895_615659_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|615774_617115_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|618184_619609_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|619608_620310_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|621814_622765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622860_623832_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623836_624517_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624654_625047_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625154_626171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626410_627196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627290_628700_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628710_629511_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629531_630302_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630344_630812_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630808_631759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633707_634586_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635512_638491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638844_639795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639791_640880_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640915_641779_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642918_643308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643311_644094_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644127_644913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645188_646328_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646324_647116_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647112_647862_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647858_648731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648730_649732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649728_650892_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650917_651601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651554_652889_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652881_653976_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654742_655693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	674604	751913	4111608	integrase,transposase,tRNA,protease	Bacillus_phage(20.0%)	58	721741:721759	741629:741647
WP_023995489.1|674604_675555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|675653_677129_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|678716_679604_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|679606_680548_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|680593_682159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|683936_685262_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|685444_686902_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|686865_687363_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|687393_688365_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|688417_688849_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|688978_689647_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|690375_691479_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|691584_692859_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|692870_693896_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|693897_695268_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|695268_696405_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|696451_698377_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|698373_699495_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|699491_700646_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|700642_701773_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|701780_703346_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|703352_704735_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|705013_705625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|705716_707132_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|707149_707860_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|707856_709179_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|709258_711220_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|711345_712659_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|712767_714066_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|714248_715157_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|715166_715376_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|715387_717067_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|717168_718122_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|718212_719040_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|719038_720925_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|720921_721521_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|721569_722469_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
721741:721759	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|722677_723628_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|723750_724365_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|724493_725090_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725086_725869_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725941_727033_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727312_728440_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728781_729828_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730338_733095_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733096_736048_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736063_737275_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737271_737472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737458_738409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738923_739181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740717_741002_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741785_742736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741629:741647	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745763_747617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750962_751913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	997847	1100240	4111608	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997847_998963_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999063_999882_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999979_1000591_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000750_1002127_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002189_1002648_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002732_1003428_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003489_1003771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004333_1005086_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005130_1006207_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006203_1007154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007256_1007919_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008013_1008184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008536_1009538_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009540_1010737_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010757_1011561_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011641_1011938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011968_1012532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012572_1013430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013437_1014187_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014208_1015081_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015109_1015889_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015922_1016720_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019374_1019767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019760_1020621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020624_1021587_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022363_1023053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023913_1024864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025213_1026083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026153_1026849_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026838_1027348_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027344_1028565_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028512_1029415_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030301_1031588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031626_1033000_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033038_1033740_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034038_1035028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035128_1035590_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035605_1036154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036295_1037771_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037876_1038968_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038971_1039754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039763_1040552_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041677_1042112_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042108_1043119_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043162_1044089_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044375_1044744_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044960_1045911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045955_1048382_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048430_1049123_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049195_1050395_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050412_1051318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051433_1052363_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052388_1053735_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053747_1054512_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054525_1055308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055500_1056451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056512_1057622_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058134_1058971_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059097_1060006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060002_1060953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061338_1061881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062916_1063867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064108_1064477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064522_1065647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066781_1067522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067625_1068246_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068349_1069300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069296_1071405_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071549_1072209_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072240_1072705_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072980_1073166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073217_1073970_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073976_1075239_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075280_1076519_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077596_1078724_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078734_1079562_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079548_1080415_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081781_1082186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082277_1083228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083597_1084509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084523_1085234_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085230_1086475_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086476_1086911_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086939_1087245_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087343_1088294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088350_1089499_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089579_1090530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091061_1091859_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091906_1092560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092516_1093605_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093769_1095995_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098272_1099169_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099289_1100240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1130626	1201597	4111608	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130626_1131577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131633_1132746_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135129_1136080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136670_1137447_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137564_1137828_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137928_1138933_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139133_1140735_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140760_1141519_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141610_1142267_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142357_1143122_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143131_1143320_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143375_1144419_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144415_1144829_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144825_1145446_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145726_1146677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146844_1148236_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148308_1148887_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149003_1150401_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150516_1151722_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151821_1152340_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152434_1152680_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152907_1153222_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153320_1158501_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158497_1160666_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160721_1163037_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163041_1164361_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164379_1166053_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166057_1166726_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166882_1170704_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171034_1171985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172006_1173152_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173300_1174230_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174226_1175315_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175311_1176115_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176111_1176843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176900_1178190_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178286_1178889_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183442_1183781_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184488_1184755_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186461_1187412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187408_1188740_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190000_1192001_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191993_1192635_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192631_1193039_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193035_1193836_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193910_1194615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194646_1195441_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196486_1197437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197535_1197970_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198052_1200389_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200580_1201597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1248991	1329865	4111608	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248991_1249942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249938_1250889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251149_1252178_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252257_1253556_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253552_1254134_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254446_1258493_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258733_1266395_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266391_1267342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268481_1268955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269094_1269715_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269850_1270651_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270705_1271797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271818_1272262_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272290_1272923_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273033_1273450_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273442_1274135_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274241_1274616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274692_1275502_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275597_1276542_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276580_1277552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277642_1278080_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278138_1279020_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280023_1280884_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280916_1282299_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282295_1283315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283687_1284182_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284189_1284930_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285010_1286615_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286654_1287443_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287568_1289734_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290614_1291427_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291439_1291748_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291865_1293596_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293597_1294800_-	lipoprotein	NA	NA	NA	NA	NA
WP_003810957.1|1295661_1296129_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296264_1297647_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297643_1298768_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298764_1301401_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301816_1302767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306513_1307125_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307347_1308808_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308904_1310497_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310850_1311108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311109_1312450_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312545_1313235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313247_1314678_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316402_1317224_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317234_1318806_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318834_1319812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319838_1320642_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320638_1321433_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321440_1322676_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322689_1323103_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1323413_1323731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1323852_1324803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325424_1327152_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327263_1328622_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328914_1329865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1449260	1501413	4111608	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1449260_1450211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450377_1450731_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450743_1451106_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451147_1451573_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1451775_1453032_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453230_1454211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454360_1455602_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455700_1456651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456659_1457355_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460176_1460776_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460786_1462952_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462975_1464760_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464759_1464849_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465543_1465816_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465815_1467882_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468927_1469878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469993_1470326_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470322_1471009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470995_1471955_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471987_1474357_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474356_1474989_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475090_1476431_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476477_1477833_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478123_1478360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478547_1478865_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479137_1479653_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479923_1480679_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481017_1481224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481231_1481891_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482185_1484390_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484500_1485724_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485846_1486821_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486888_1488082_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488096_1488897_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488893_1490750_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490746_1491352_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491370_1492756_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493481_1494708_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494796_1495579_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1495677_1496628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496654_1497428_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497439_1498681_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500462_1501413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1545338	1605251	4111608	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1545338_1545827_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545944_1546523_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546628_1546997_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547095_1548046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548052_1549165_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549851_1551054_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551257_1553918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553930_1557335_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558002_1560228_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560274_1560601_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560651_1561260_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561358_1562309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1562407_1563358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563427_1564192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1564188_1564725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564891_1565743_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565802_1566429_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566425_1567376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567474_1568587_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568576_1569578_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569683_1571195_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571191_1572496_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572607_1573168_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573435_1573990_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574445_1574661_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574915_1577513_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577509_1578697_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1579356_1579971_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1580059_1581181_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581198_1582104_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582996_1583947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584128_1584881_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584949_1585609_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585605_1586334_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586346_1588626_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588650_1588854_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588895_1589528_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589663_1590581_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590577_1591291_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591528_1592299_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592303_1592903_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593147_1594638_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594696_1594981_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1595546_1596473_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596609_1597350_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597516_1598893_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599074_1599980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601631_1603434_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1603551_1604202_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604300_1605251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1650423	1706014	4111608	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650423_1651374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651432_1652206_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652198_1653755_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653751_1654702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656028_1656631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656870_1657572_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657565_1658348_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658532_1659483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659581_1660319_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660508_1661267_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661313_1662303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662480_1663449_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664988_1665957_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665965_1666907_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667380_1668391_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668381_1669896_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669892_1671239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1671241_1672276_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672325_1673951_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674503_1675454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675558_1676506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676559_1678374_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678366_1679041_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679170_1682245_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682258_1682558_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682872_1683496_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1683739_1684609_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684586_1685531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685616_1686543_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686655_1687435_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687425_1688622_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688652_1689603_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689824_1690514_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1690578_1691334_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691385_1692378_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692387_1693341_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693456_1694419_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695820_1696249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696245_1697196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1697489_1698212_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698650_1699838_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1699841_1700192_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701941_1702913_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702926_1703640_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703644_1704562_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704668_1704965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705063_1706014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	1909398	1965182	4111608	transposase,tRNA	Faecalibacterium_phage(25.0%)	51	NA	NA
WP_005012067.1|1909398_1910349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1910430_1910979_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1910981_1911320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1911714_1914306_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1914372_1915116_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1915128_1915515_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1915521_1915812_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1915947_1916247_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1916315_1917218_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1917221_1917992_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1918377_1918827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1918894_1919845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853556.1|1919831_1920062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|1920206_1921118_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1921343_1922861_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1924092_1925055_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1925143_1925392_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1931949_1932393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1932457_1932730_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1932726_1933674_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1933855_1935250_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1935272_1935668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1935664_1936924_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1937045_1938101_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1938103_1938763_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1938778_1941436_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1941513_1942716_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1942712_1943225_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1943347_1943785_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1944061_1945012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1945110_1946061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1946224_1948120_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1948233_1948401_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1948464_1948701_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1949069_1950221_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005013747.1|1951784_1952735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1953220_1953397_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248938.1|1953401_1954007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812044.1|1954081_1955053_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1955056_1955911_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1955929_1956751_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1956782_1957577_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1957625_1958231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1958188_1959022_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1959307_1960813_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1960854_1961637_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1961706_1962153_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1962149_1963376_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1963368_1963773_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1963932_1964235_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1964231_1965182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2019881	2062366	4111608	transposase	Erysipelothrix_phage(20.0%)	39	NA	NA
WP_005012067.1|2019881_2020832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020930_2021227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021401_2022754_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022896_2023913_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025892_2026906_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2026992_2027898_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028054_2028399_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028556_2029015_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029028_2031245_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031241_2032303_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032331_2033306_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033257_2034076_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034088_2034697_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034871_2035267_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035285_2036725_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036753_2037101_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037119_2038070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038722_2039673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039756_2041574_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041647_2042295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042307_2043237_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043406_2043871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044118_2044799_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044847_2046539_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046554_2047106_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047102_2047474_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047586_2048423_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048433_2048958_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049055_2049235_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049364_2050339_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050469_2050826_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050815_2051691_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051789_2052674_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052695_2053991_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054939_2055590_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055677_2057198_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057455_2059321_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060366_2061317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2061415_2062366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2068336	2120133	4111608	transposase,tRNA,protease	Klosneuvirus(22.22%)	50	NA	NA
WP_005012067.1|2068336_2069287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2069453_2070428_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2070424_2070568_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2072189_2072852_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2072854_2073031_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2073027_2073966_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2074057_2075548_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2075633_2075786_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2075799_2076039_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2076134_2076878_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2076886_2077411_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2077509_2078433_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2078429_2079191_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2079206_2080292_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2080491_2081442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081401_2081815_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082099_2082399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082808_2085091_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2085556_2085751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085776_2087807_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087826_2088039_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088316_2088856_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088969_2090265_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090341_2091499_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091682_2092582_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092600_2093905_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093870_2094977_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095064_2095301_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095439_2096510_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096513_2097869_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_057110966.1|2097895_2099053_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099058_2099697_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2099698_2100994_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2101043_2102330_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102345_2102852_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102848_2103997_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104024_2104450_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104772_2107655_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107747_2108503_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109268_2110618_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110716_2111667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111765_2112716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112789_2113263_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113288_2114497_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114493_2115267_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115266_2115890_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116055_2116316_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116619_2117201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117267_2117522_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117508_2120133_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2147916	2204201	4111608	transposase,protease	Lake_Baikal_phage(25.0%)	51	NA	NA
WP_010929577.1|2147916_2148867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2148965_2149916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2150116_2150926_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2151050_2152001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2151997_2152891_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2153015_2153210_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2153209_2153551_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2153560_2155423_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2155552_2156065_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2156067_2156391_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2156392_2156803_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2156840_2158052_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2158069_2158582_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2158797_2159289_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2159541_2161578_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2161655_2162858_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2162986_2163637_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2165194_2166145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166715_2166928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166945_2167677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167711_2168353_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168345_2169014_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171226_2172003_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172024_2173182_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173178_2173610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2173606_2174404_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174423_2174825_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174891_2175863_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175928_2177152_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177379_2178330_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178453_2180907_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181095_2182400_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182504_2183158_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183160_2184471_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2184649_2185228_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185339_2185540_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185885_2186452_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186535_2186739_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187045_2187366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187407_2187689_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187763_2189020_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189402_2189732_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191302_2192124_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192123_2193263_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193269_2194166_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2194180_2196088_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196447_2199060_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199112_2201413_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201409_2202618_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2202879_2203254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203250_2204201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2207308	2261578	4111608	transposase,tRNA	Klosneuvirus(15.38%)	47	NA	NA
WP_010930542.1|2207308_2210170_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210172_2210679_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210783_2211992_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2211993_2212932_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213093_2213567_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213563_2214514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2214624_2215065_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2215193_2216423_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2216461_2217283_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2217336_2218488_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2218579_2219068_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2221618_2224168_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2224238_2226812_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2227077_2227278_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2227309_2227471_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2227528_2227867_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2228015_2228966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229064_2230015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2230789_2231458_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2231439_2233395_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2233637_2234387_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2234399_2235263_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2235266_2236682_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2236815_2237544_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2237682_2237883_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2238058_2238457_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2238480_2239881_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2239999_2240752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2241040_2241718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2241744_2242524_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2242520_2243405_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2243422_2244202_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2244186_2244945_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2245082_2245718_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2245985_2247002_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2247099_2248140_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2248274_2249567_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2250926_2251310_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2251327_2251915_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2251952_2252903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2253001_2253562_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2253558_2254104_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2254299_2255328_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2255368_2256709_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2256817_2257822_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2257928_2260529_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2260627_2261578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2300691	2364269	4111608	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_005012067.1|2300691_2301642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2301740_2302691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2302992_2303469_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2304092_2305730_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2305760_2307074_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2307207_2307525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2307625_2308948_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2308944_2309895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2310424_2311447_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2311475_2312306_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2312322_2314020_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2314084_2315161_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2315320_2316184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2316214_2316784_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2316800_2317652_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2318709_2319591_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2319665_2320655_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2320717_2321668_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2321730_2322588_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2322647_2323136_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2324708_2325899_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2325895_2327482_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2327500_2328568_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2328672_2330217_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2330636_2332211_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2332327_2333335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2333331_2334171_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2334175_2335813_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2335809_2336760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2336902_2338177_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2338206_2338497_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2338569_2339583_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2339602_2340865_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2340867_2341791_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2341787_2343281_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2343291_2344224_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2344405_2345731_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2345765_2347121_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2347181_2348702_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2348856_2349588_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2349685_2350996_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2351011_2351923_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2351913_2352507_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2352568_2352955_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2352966_2353437_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2353448_2354072_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2354092_2356840_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2363318_2364269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2493411	2559295	4111608	protease,tRNA,transposase	Planktothrix_phage(22.22%)	60	NA	NA
WP_004566381.1|2493411_2494899_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2494936_2495995_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2495994_2496495_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2496507_2497107_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2497103_2497604_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2497605_2498835_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2499024_2499264_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2499446_2500199_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2500200_2501136_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2501217_2502204_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2502203_2503262_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2503318_2503501_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2503552_2504146_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2504254_2504854_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2504850_2505561_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2505562_2506390_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2508206_2509448_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2509459_2510233_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2510259_2511210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2511689_2512346_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2512360_2514028_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2514030_2514660_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2514871_2515966_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2516110_2516923_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2516926_2518510_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2518680_2519811_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2519997_2521074_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2521155_2521806_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2521820_2523224_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2523507_2524326_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2524322_2525027_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2525926_2527042_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2527075_2527450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2527472_2528630_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2528642_2528876_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2529510_2532480_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2532494_2532704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2532855_2533485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2533481_2535539_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2535595_2536276_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2536272_2536833_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2536839_2537937_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2538089_2538683_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2538679_2539972_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2539985_2540528_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2540537_2541374_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2541407_2542469_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2542510_2543563_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2543578_2543881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2544022_2544973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2545151_2546846_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2546842_2547928_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2547975_2548875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2548885_2549530_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2550551_2553794_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2553804_2554959_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2555185_2556148_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2556246_2557197_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2557295_2558246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2558344_2559295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2611832	2678332	4111608	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2611832_2612783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2613152_2613725_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2613727_2614738_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2614730_2615231_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2615241_2615583_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2615651_2616386_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2616402_2616672_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2616694_2617483_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2617529_2618546_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2618762_2620205_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2620383_2622003_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2622123_2623944_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2624022_2625555_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2625588_2627235_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2627304_2628327_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2628344_2629478_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2629480_2630170_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2630169_2630955_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2630998_2631763_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2631801_2633223_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2633288_2633993_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2634040_2634460_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2634472_2634880_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2635063_2635774_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2635900_2636191_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2636208_2636691_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2641196_2642351_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2642656_2643673_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2643919_2644708_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2644774_2645455_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2645451_2646222_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2646320_2647271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2647326_2648244_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2648254_2649433_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2649452_2650448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2652036_2652645_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2652632_2653673_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2653690_2654653_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2654649_2655843_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2655839_2656637_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2656662_2657649_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2657667_2659707_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2659908_2660589_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2660602_2661514_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2661510_2662089_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2662227_2663133_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2663140_2666560_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2666547_2669148_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2670103_2670736_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2671129_2671888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2671884_2673087_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2673274_2674225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2675132_2676278_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2676264_2677020_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2677136_2677316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2677381_2678332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2840897	2906481	4111608	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2840897_2841848_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2841946_2842897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2843099_2844089_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2844172_2844526_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2844603_2845212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2846885_2847464_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2847488_2848442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2848481_2849399_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2849520_2850447_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2850454_2851201_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2851527_2852469_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2852695_2854393_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2854827_2856249_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2856402_2857182_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2857306_2858185_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2858290_2859415_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2859460_2860423_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2860415_2861270_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2861377_2861788_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2861784_2862735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2862833_2863715_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2863792_2865172_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2865210_2866056_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2866071_2866386_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2866418_2866955_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2867127_2867703_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2867805_2868543_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2868610_2870248_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2870355_2871111_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2871098_2872061_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2872168_2872963_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2873024_2875100_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2875264_2877640_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2877720_2879076_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2880554_2881277_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2881331_2882315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2882444_2883395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2883391_2884294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2884381_2885140_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2885152_2886244_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2886341_2887769_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2887998_2889213_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2889258_2892129_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2894539_2895028_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2895153_2897850_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2898004_2900287_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2900451_2901084_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2901182_2902133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2902179_2902734_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2902801_2903647_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2903716_2904685_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2904684_2906481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2924051	2985078	4111608	transposase,tRNA,holin	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2924051_2925572_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2925614_2925917_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2925913_2926546_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2926624_2928490_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2928486_2929281_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2929309_2930425_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2931329_2932208_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2932207_2933032_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2933199_2934150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2934362_2937212_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2937193_2937922_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2938062_2939526_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2939522_2939894_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2939911_2941225_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2941261_2941720_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941832_2942783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2942779_2943793_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2943932_2944919_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2945277_2945985_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2946565_2947516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2947667_2948270_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2948288_2948921_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2948965_2949217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2949158_2951045_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2951063_2951906_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2951902_2953261_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2953481_2954276_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2954506_2956000_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2956235_2958317_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2958511_2959552_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2959686_2960703_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2960724_2961582_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2961626_2962403_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2962770_2963721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2963747_2964212_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2965418_2967707_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2967823_2968696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2968738_2969893_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2969927_2970758_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2970841_2972386_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2972428_2972788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2972789_2973203_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2973243_2973561_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2973645_2974362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2974625_2976047_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2976113_2978861_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2979193_2980210_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2980545_2981187_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2981277_2982714_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2982871_2983945_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2983941_2985078_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 26
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	2988831	3061348	4111608	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2988831_2989848_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2990785_2992213_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2992209_2993232_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2993221_2993695_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2993835_2994723_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2994719_2996363_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2996359_2997367_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2998197_2999214_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2999313_2999946_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2999954_3000344_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3000396_3001449_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3002312_3004019_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3004092_3004593_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3004607_3006665_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3006691_3006985_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3007086_3008034_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3008046_3008922_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3009042_3009603_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3009637_3009961_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3010396_3011134_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3011432_3012383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3012626_3012890_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3012963_3013245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3013261_3014122_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3014118_3014454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3014507_3015158_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3016838_3017783_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3017828_3018146_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3018148_3019087_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3019264_3019750_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3019768_3020317_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3020348_3020501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3021830_3022472_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3022626_3024975_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3024971_3025910_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3025935_3027126_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3027122_3027896_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3027925_3029119_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3029236_3030247_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3030264_3032301_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3032495_3033236_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3033334_3034285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3034327_3035503_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3035724_3037515_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3037527_3039189_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3039201_3041907_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3042199_3043954_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3043950_3044577_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3044573_3045425_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3045554_3047615_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3047801_3048416_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3048561_3048813_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3048882_3050265_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3050261_3053441_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3054248_3055166_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3055217_3055949_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3056008_3056581_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3058089_3059106_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3059243_3060293_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3060397_3061348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	3080748	3145688	4111608	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3080748_3081699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3081797_3082382_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3082416_3083406_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3083402_3084344_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3084340_3085561_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3085603_3085918_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3086109_3086469_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3086470_3088186_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3088373_3089045_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3089059_3090388_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3090384_3091284_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3091370_3092456_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3092448_3093579_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3093581_3096263_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3096633_3097215_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3097340_3098066_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3098062_3098740_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3098955_3100137_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3100909_3101092_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3101121_3102072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3102201_3102594_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3102870_3103782_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3103906_3104881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3104877_3105828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3105926_3107012_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3107109_3107520_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3108135_3110049_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3110184_3112797_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3112798_3113533_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3113696_3114878_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3114874_3115087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3115083_3116064_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3116109_3116937_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3117086_3118901_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3118955_3119339_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3119335_3120286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3120398_3120650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3120843_3121059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3121155_3122274_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3122393_3122606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3122765_3122987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3123039_3123990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3125166_3126537_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3126569_3127361_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3127373_3128429_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3128454_3129330_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3129435_3129684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3129718_3131173_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3131169_3131691_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3131719_3133072_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3133295_3136184_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3138328_3139630_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3139644_3140361_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3140642_3141323_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3141850_3142510_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3142908_3144741_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3144737_3145688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	3237311	3301412	4111608	transposase	Klosneuvirus(16.67%)	51	NA	NA
WP_041337087.1|3237311_3238262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3238258_3239278_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3239287_3241996_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3242143_3242800_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3242898_3243849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3243996_3244890_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3245089_3246784_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3246818_3247745_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3247813_3248911_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3248929_3249793_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3249804_3250587_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3250583_3251702_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3251698_3253231_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3253271_3254279_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3254423_3255146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3255161_3256184_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3256500_3257235_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3257319_3259065_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3259061_3259814_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3259858_3260815_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3260903_3261470_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3261477_3262338_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3262367_3263096_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3263127_3263811_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3264648_3265563_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3265627_3266536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3266626_3268051_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3268052_3269375_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3269371_3271510_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3271587_3276708_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3276808_3277117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3277186_3277744_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3277759_3279241_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3279295_3281149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3281411_3282749_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3282783_3284781_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3284798_3286847_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3286977_3287844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3288112_3289078_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3289192_3290341_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3290765_3291077_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3291110_3291371_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3291520_3292654_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3292724_3293861_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3294026_3294821_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3294883_3295327_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3295442_3296393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3296515_3296923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3296995_3299191_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3299412_3300363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3300461_3301412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	3306412	3415923	4111608	protease,tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	112	NA	NA
WP_010929591.1|3306412_3307363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3307520_3308786_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3308819_3309917_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3310571_3311522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3311522_3312092_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3312159_3312975_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3313141_3314761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3314839_3315781_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3315780_3316665_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3316668_3318321_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3318360_3319758_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3319799_3321179_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3321218_3321437_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3321777_3322650_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3322809_3323760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3323858_3324809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3325540_3325918_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3325902_3326604_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3326747_3327440_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3327439_3328543_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3328652_3331025_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3331021_3332581_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3332605_3333403_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3333434_3334580_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3334684_3336127_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3336129_3337359_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3339496_3340447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3341576_3342134_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3342109_3342460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3342628_3343423_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3343419_3344469_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3344468_3345158_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3345244_3345742_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3345773_3347090_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3347106_3348081_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3348117_3348576_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3348575_3349256_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3349258_3349687_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3349739_3351470_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3351535_3352108_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3352088_3352775_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3353130_3353802_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3354130_3354352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3354351_3354633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3354629_3355145_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3355144_3355696_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3355674_3355917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3355921_3356734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3356733_3356997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3357037_3357235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3357215_3357632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3357636_3361593_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3361585_3361975_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3361971_3362505_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3362572_3362932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3362941_3365554_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3365579_3365870_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3365887_3366217_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3366226_3366745_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3366999_3367500_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3367507_3367930_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3367926_3368325_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3368321_3368717_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3368716_3368905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3368918_3369401_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3369463_3369715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3370389_3371340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3371768_3372371_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3372493_3372736_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3372741_3373797_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3373825_3375244_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3375246_3376524_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3376510_3376996_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3377635_3378586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3378842_3379532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3379524_3379776_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3380330_3380942_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3381013_3381220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3381471_3382422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3382520_3383594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3383761_3384556_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3384595_3385120_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3385112_3386855_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3387064_3387823_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3387825_3388533_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3388549_3389431_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3389441_3390200_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3390168_3390924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3390993_3392412_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3392433_3393084_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3393217_3393553_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3393641_3394592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3394668_3396489_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3396493_3397567_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3397689_3398658_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3398731_3399643_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3399661_3400234_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3400314_3400863_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3400862_3402452_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3402521_3402761_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3402801_3403827_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3403892_3405074_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3405170_3405623_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3405632_3406973_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3407289_3408327_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3408708_3409068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3409151_3410093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3410167_3411118_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3411411_3412506_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3412596_3413469_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3413490_3414330_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3414405_3415923_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 31
NZ_CP011718	Bordetella pertussis strain I110 chromosome, complete genome	4111608	4010676	4075588	4111608	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4010676_4011162_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4011250_4011388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4011380_4012361_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4012627_4013437_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4013476_4014157_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4014150_4014609_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4014620_4014983_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4015065_4015749_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4015804_4016113_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4016131_4016446_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4016442_4018917_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4018924_4020316_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4020312_4020498_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4020476_4021178_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4021174_4021996_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4021976_4023101_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4023093_4024113_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4024318_4025209_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4025453_4026245_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4026327_4026702_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4026679_4028089_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4028081_4029464_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4029798_4031403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4031480_4032452_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4032462_4033389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4033779_4034730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034899_4036126_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036325_4037192_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037184_4038147_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038247_4039198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039296_4040247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040345_4041296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041292_4042786_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042782_4045890_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045886_4048955_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048951_4050202_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4050382_4051135_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4051176_4051821_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4051829_4052810_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052909_4053653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4053735_4054083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054180_4055023_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055067_4055955_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4055981_4056170_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056267_4057725_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057711_4059238_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059256_4059724_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4059723_4060746_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4060866_4061607_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4061661_4062762_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062763_4063954_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064073_4065090_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065408_4066080_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066076_4066985_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067196_4067844_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4071704_4072772_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072782_4073592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073681_4074455_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853639.1|4074637_4075588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
