The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	27282	70036	4103237	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	77634	136108	4103237	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	164893	225404	4103237	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	233336	286924	4103237	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	390857	448366	4103237	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	590420	651611	4103237	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	656934	703125	4103237	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	709291	763221	4103237	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761740_762148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	885810	953786	4103237	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	997315	1069832	4103237	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011048_1013109_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1073585	1134612	4103237	tRNA,holin,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079802_1082550_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082616_1084038_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084301_1085018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085102_1085420_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085460_1085874_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085875_1086235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086277_1087822_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087905_1088736_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088770_1089925_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089967_1090840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090956_1093245_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094451_1094916_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094942_1095893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095910_1096048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096260_1097037_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097081_1097939_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097960_1098977_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099111_1100152_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100346_1102428_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102663_1104157_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104387_1105182_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105402_1106761_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106757_1107600_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107618_1109505_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109446_1109698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109742_1110375_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110393_1110996_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111147_1112098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112678_1113386_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113744_1114731_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114870_1115884_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115880_1116831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116848_1116989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116943_1117402_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117438_1118752_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118769_1119141_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119137_1120601_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120741_1121470_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121451_1124301_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124513_1125464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125631_1126456_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126455_1127334_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128238_1129354_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129382_1130177_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130173_1132039_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132117_1132750_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132746_1133049_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133091_1134612_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1152182	1217766	4103237	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152182_1153979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153978_1154947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155016_1155862_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155929_1156484_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156530_1157481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157579_1158212_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185700_1186495_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192277_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215560_1215749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216815_1217766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1316893	1385380	4103237	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316893_1317844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318612_1319251_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320140_1320587_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320668_1321370_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321370_1322138_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322134_1323373_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323372_1324299_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324401_1325517_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325532_1326483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326836_1327418_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327414_1328248_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328458_1329772_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329948_1330830_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330849_1331701_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331753_1332842_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332952_1334080_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334314_1334926_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335024_1335975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336196_1336574_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336721_1337219_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337215_1337743_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337876_1338692_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338704_1339886_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339933_1340827_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340953_1341424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341549_1342377_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342405_1343182_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343178_1343454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343468_1343933_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343944_1344646_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344755_1345256_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345338_1346517_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348144_1348480_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348667_1350116_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350173_1350518_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350624_1351164_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351256_1352207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1352224_1352464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352945_1353377_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353558_1353963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355199_1355523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355525_1356413_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356445_1356871_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356942_1357296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357535_1358042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358080_1359412_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359471_1360287_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360283_1361138_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364200_1366744_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368110_1369865_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369861_1371982_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371986_1374182_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374178_1377520_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380322_1381273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381338_1381518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381634_1382390_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382376_1383522_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384429_1385380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1445871	1501357	4103237	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445871_1446822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448023_1448470_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448462_1449938_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449934_1450690_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450682_1451693_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451682_1453359_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453671_1454004_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454017_1454413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454422_1454749_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1454745_1455072_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1454998_1456021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456017_1456368_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456415_1456844_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456851_1458225_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458365_1458743_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459005_1460313_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460373_1461204_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461200_1461689_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461730_1463251_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463294_1463771_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464574_1467172_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467201_1468023_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468747_1469497_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469680_1470559_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470656_1471373_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471387_1471948_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472114_1472879_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472898_1473756_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473752_1474952_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1474991_1476326_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476378_1478715_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478840_1479404_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479412_1480504_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480575_1481031_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481031_1481826_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481822_1483004_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1482990_1483596_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483592_1484366_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484377_1485205_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485366_1487730_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487797_1488517_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488640_1489066_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489100_1490051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490168_1491095_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491160_1492318_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492298_1492766_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492913_1493864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493880_1494315_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494304_1494655_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494851_1496006_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496002_1497175_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497222_1498116_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498161_1498599_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498658_1499348_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499357_1500308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500406_1501357_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1793927	1841942	4103237	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1793927_1794878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1794976_1795927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796025_1798626_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798732_1799737_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799845_1801186_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801226_1802255_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802450_1802996_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1802992_1803553_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803651_1804602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804639_1805227_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805244_1805628_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806987_1808280_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808414_1809455_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809552_1810569_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1810836_1811472_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811609_1812368_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812352_1813132_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813149_1814034_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814030_1814810_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814836_1815514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815802_1816555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816673_1818074_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818097_1818496_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818671_1818872_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819010_1819739_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819872_1821288_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821291_1822155_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822167_1822917_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1823159_1825115_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1825096_1825765_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826539_1827490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827638_1827977_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828034_1828196_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828227_1828428_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828693_1831267_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831337_1833887_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836437_1836926_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837017_1838169_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838222_1839044_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839082_1840312_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840440_1840881_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1840991_1841942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1903504	1962774	4103237	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1903504_1904455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904579_1905389_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1905589_1906540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1907813_1909031_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910087_1910990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911066_1911939_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912069_1912438_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912495_1913542_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1913737_1914994_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1914998_1916336_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916485_1917442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917544_1918477_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918592_1918913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1918905_1919265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919312_1920887_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1920939_1921884_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1921901_1922732_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1922724_1924359_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1924355_1925711_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1926617_1928195_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1928198_1929473_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1929570_1929945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1931660_1932794_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1932831_1933437_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1933433_1934252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1934323_1936948_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1936934_1937189_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937255_1937837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938140_1938401_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938566_1939190_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939189_1939963_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939959_1941168_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941193_1941667_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1941740_1942691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1942789_1943740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1943838_1945188_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945953_1946709_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1946801_1949684_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1950006_1950432_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950459_1951608_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951604_1952111_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1952126_1953413_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1953462_1954758_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1954759_1955398_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1955403_1956561_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956587_1957943_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957946_1959017_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959155_1959392_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959479_1960586_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960551_1961856_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1961874_1962774_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	1973014	2017337	4103237	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1973014_1973965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974063_1975014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1975213_1976299_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1976314_1977076_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1977072_1977996_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1978094_1978619_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1978627_1979371_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1979466_1979706_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1979719_1979872_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979957_1981448_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1981539_1982478_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1982474_1982651_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1982653_1983316_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1984937_1985081_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1985077_1986052_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1985946_1986201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1986218_1987169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987165_1988440_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1988543_1989737_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1989733_1990387_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990383_1991820_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1991807_1992167_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1992981_1993122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1993139_1994090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995135_1997001_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997258_1998779_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998866_1999517_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000465_2001761_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001782_2002667_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002765_2003641_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003630_2003987_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2004117_2005092_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005221_2005401_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005498_2006023_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006033_2006870_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006982_2007354_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007350_2007902_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007917_2009609_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009657_2010338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010585_2011050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011219_2012149_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012161_2012809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012882_2014700_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014783_2015734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2016386_2017337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2296898	2358246	4103237	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2296898_2297849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2297965_2298685_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2298857_2299844_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2299844_2300327_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2300330_2301614_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2301610_2302549_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2302545_2304255_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2304264_2305512_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2307122_2308412_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2309549_2310323_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2310984_2311728_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2311802_2312543_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2312738_2313575_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2313625_2314396_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2314445_2315498_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2315494_2316121_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2316117_2317152_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2317330_2318347_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2318445_2319396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2322136_2323426_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2323544_2323982_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2324025_2325234_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2325380_2325845_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2325868_2326819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2327803_2328577_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2328573_2329572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2329656_2330433_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2330588_2332193_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2332573_2333698_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2333824_2334448_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2334444_2336346_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2336394_2337189_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2337201_2338203_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2338199_2338649_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2338698_2339547_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2339644_2340187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2340230_2341181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2341336_2341663_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2341659_2341941_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2341940_2342420_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2342416_2344045_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2344041_2344386_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2344385_2347319_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2348477_2349428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2349526_2349823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2349929_2350847_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2350851_2351565_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2351578_2352550_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2354299_2354650_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2354653_2355841_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2356279_2357002_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2357295_2358246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2379037	2450191	4103237	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2379037_2379988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2380540_2382166_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2382215_2383250_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2383252_2384599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2384595_2386110_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2386100_2387111_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2387584_2388526_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2388534_2389503_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2391042_2392011_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2392188_2393178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2393224_2393983_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2394172_2394910_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2395008_2395959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2396143_2396926_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2396919_2397621_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2397860_2398463_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2399789_2400740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2400736_2402293_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2402285_2403059_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2403117_2404068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2404149_2405325_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2405338_2407396_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2407392_2408418_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2408429_2409719_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2409741_2410839_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2410835_2411726_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2411722_2413807_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2413838_2415008_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2415049_2415790_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2415789_2416560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2417415_2418201_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2418227_2420312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2420479_2422435_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2422758_2423259_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2423357_2424884_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2425021_2425909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2425923_2426877_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2426928_2429019_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2429034_2429421_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2432114_2432918_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2434211_2435114_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2435178_2435955_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2436276_2437326_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2437449_2439120_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2439124_2439919_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2440017_2440968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2440987_2441893_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2441970_2442669_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2442828_2443773_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2443782_2445270_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2445269_2446337_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2446400_2447813_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2447998_2449219_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2449240_2450191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2534391	2585563	4103237	tRNA,transposase	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2534391_2535342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535440_2536211_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2536207_2536879_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536875_2537517_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537529_2538450_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538610_2539771_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539812_2540763_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2541361_2541586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541750_2543445_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543566_2543836_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2543951_2544350_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2544360_2545317_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545453_2545999_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2546019_2547969_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2548356_2549133_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2549138_2549531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2549952_2550903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2550899_2551997_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2552028_2552979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554760_2556002_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2556013_2556787_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556813_2557764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557862_2558645_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558733_2559960_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2560685_2562071_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2562089_2562695_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562691_2564548_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564544_2565345_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2565359_2566553_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566620_2567595_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567717_2568941_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2569051_2571256_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571550_2572210_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2572217_2572424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572762_2573518_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2573788_2574304_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574576_2574894_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2575081_2575318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575608_2576964_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2577010_2578351_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578452_2579085_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2579084_2581454_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581486_2582446_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2582432_2583119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2583115_2583448_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2583563_2584514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2584612_2585563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2683857	2724526	4103237	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005012067.1|2683857_2684808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684918_2685101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685200_2685797_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685980_2687072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687571_2687982_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2688040_2688370_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2688387_2690805_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690817_2691840_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691914_2692274_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692289_2692487_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012808.1|2692822_2693773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693967_2694417_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694413_2695364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695474_2696923_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2697037_2697283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697422_2698373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698617_2699331_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699453_2699681_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699975_2700614_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2700722_2701757_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701753_2702704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703119_2703644_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703647_2703917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704115_2705177_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705260_2706895_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706896_2707700_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707728_2708688_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708691_2710206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710242_2711247_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711678_2712149_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712184_2712796_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712826_2713450_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713530_2715063_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2715097_2716315_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716382_2717414_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717410_2718580_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718573_2719254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719415_2720258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720420_2721392_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721563_2722442_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722464_2723535_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723575_2724526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2728637	2810772	4103237	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2728637_2729588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2730337_2730751_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2730764_2732000_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2732007_2732802_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2732798_2733602_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2733628_2734606_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2734634_2736206_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2736216_2737038_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2738762_2740193_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2740205_2740895_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2740990_2742331_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2742332_2742590_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2742943_2744536_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2744632_2746093_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2746315_2746927_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2750673_2751624_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2752039_2754676_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2754672_2755797_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2755793_2757176_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2757311_2757779_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931045.1|2758640_2759843_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2759844_2761575_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2761692_2762001_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2762013_2762826_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2763706_2765872_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2765997_2766786_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2766825_2768430_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2768510_2769251_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2769258_2769753_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2770125_2771145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2771141_2772524_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2772556_2773417_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2774420_2775302_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2775360_2775798_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2775888_2776860_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2776898_2777843_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2777938_2778748_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2778824_2779199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2779305_2779998_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2779990_2780407_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780517_2781150_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781178_2781622_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781643_2782735_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782789_2783590_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783725_2784346_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784485_2784959_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786098_2787049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787045_2794707_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794947_2798994_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799306_2799888_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799884_2801183_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801262_2802291_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802551_2803502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803498_2804449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804765_2805371_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2805424_2806738_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806812_2807283_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807282_2808071_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808081_2809734_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809821_2810772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2834697	2882406	4103237	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2834697_2835648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835782_2836889_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836899_2837997_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838141_2839347_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839353_2839875_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2839871_2840354_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840359_2840611_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840591_2841077_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841212_2844674_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844691_2845576_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845585_2846017_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846263_2846767_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2846844_2848245_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848319_2849195_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849191_2850199_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850666_2850972_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851062_2851653_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851843_2852860_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2853051_2855388_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2855470_2855905_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010929956.1|2856003_2856954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857052_2858003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857999_2858794_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858825_2859530_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859604_2860405_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860401_2860809_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860805_2861447_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861439_2863440_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864700_2866032_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866028_2866979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868685_2868952_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869659_2869998_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874551_2875154_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875250_2876540_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876597_2877329_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877325_2878129_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878125_2879214_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879210_2880140_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880288_2881434_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881455_2882406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2890403	2954151	4103237	transposase,protease	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2890403_2892719_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2892774_2894943_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2894939_2900120_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900218_2900533_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900760_2901006_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901100_2901619_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901718_2902924_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903039_2904437_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904553_2905132_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905204_2906596_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906763_2907714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907994_2908615_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908611_2909025_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909021_2910065_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910120_2910309_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910318_2911083_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911173_2911830_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911921_2912680_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912705_2914307_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914507_2915512_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915612_2915876_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915993_2916770_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917360_2918311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920694_2921807_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921863_2922814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2922831_2923098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2923022_2923244_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2923457_2924864_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2924860_2926165_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2926161_2927349_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2927565_2928018_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2928020_2928485_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2928564_2930244_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2930348_2931326_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2931405_2932374_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2932394_2933768_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2933764_2934601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2934717_2935173_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2935188_2935461_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2935553_2935877_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2935924_2936305_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2936524_2937322_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2937478_2939341_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2939390_2940302_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2940306_2940573_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2940659_2941490_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2941664_2942630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2942800_2943811_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2943958_2945110_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2946252_2947725_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2947735_2948146_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2948209_2949256_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2949362_2950241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2950254_2951451_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2951512_2953204_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2953200_2954151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	2962910	3007431	4103237	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2962910_2963861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963941_2965090_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965146_2966097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2966195_2966501_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966529_2966964_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966965_2968210_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968206_2968917_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968931_2969843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970205_2970610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970606_2971065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971071_2971980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971976_2972843_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972829_2973657_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973667_2974795_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975872_2977111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977152_2978415_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978421_2979174_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979225_2979411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979686_2980151_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980182_2980842_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980986_2983095_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983091_2984042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984145_2984766_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984869_2985610_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986744_2987869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987914_2988283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988524_2989475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990510_2991053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2991250_2991421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991438_2992389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2992385_2993294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2993420_2994257_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994769_2995879_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995940_2996891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2997083_2997866_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|2997879_2998644_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|2998656_3000003_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3000028_3000958_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3001073_3001979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3001996_3003196_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3003268_3003961_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3004009_3006436_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3006480_3007431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	3377886	3431627	4103237	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377886_3378837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379241_3379886_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379910_3380495_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380595_3381213_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381215_3382931_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382927_3383236_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383252_3383870_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383914_3384217_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384317_3385172_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385359_3385584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385753_3386026_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386443_3386851_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387220_3388015_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388115_3389351_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389419_3390436_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390447_3391824_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391820_3393017_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393013_3394552_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394548_3395808_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397748_3398699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399465_3400560_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400552_3401887_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401840_3402524_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402549_3403713_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403709_3404711_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404710_3405583_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405579_3406329_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406325_3407117_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407113_3408253_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408528_3409314_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409347_3410130_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410133_3410523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411662_3412526_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412561_3413650_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413646_3414597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414950_3417929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418855_3419734_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421682_3422633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422629_3423097_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423139_3423910_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423930_3424731_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424741_3426151_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426245_3427031_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3427270_3428287_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428394_3428787_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428924_3429605_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429609_3430581_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430676_3431627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	3437782	3497082	4103237	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437782_3439546_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439657_3440536_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440648_3441464_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441467_3441719_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441803_3442820_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443150_3443372_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445732_3446650_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447147_3448356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448435_3450007_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450124_3451060_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451248_3452193_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452760_3458478_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458483_3459611_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459666_3460293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460564_3461581_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461676_3462387_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462383_3463373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463468_3465100_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465102_3465840_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465995_3466868_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467217_3468357_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468353_3469013_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469084_3469717_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469746_3470265_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470275_3471385_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471431_3472286_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472287_3473190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474412_3475363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3477119_3478109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478284_3479073_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479069_3480101_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480119_3480683_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480738_3482259_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482522_3483227_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483234_3483963_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484077_3484452_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484494_3485784_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485780_3486950_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486946_3487786_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487845_3488781_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488793_3489744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489842_3490805_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490836_3491196_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491320_3492223_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492224_3493997_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494031_3494808_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496131_3497082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	3512020	3570093	4103237	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512020_3512971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513099_3514233_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514276_3515182_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515184_3516885_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516881_3517802_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517809_3518787_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518845_3519880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521854_3522091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3522217_3523081_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523169_3523991_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524070_3524808_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524804_3525797_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525949_3526573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526617_3527766_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530089_3531040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531380_3532331_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532429_3533380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533676_3534174_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534216_3535992_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3535999_3536866_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536872_3537607_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538776_3539571_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539860_3540451_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540484_3541813_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541887_3543033_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543144_3544143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544105_3544540_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546056_3546941_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546937_3548143_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548139_3549000_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549112_3550903_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550943_3551588_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551609_3551918_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552083_3553370_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554803_3555754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557705_3558920_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559025_3560015_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560011_3560620_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560632_3561262_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561258_3561879_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561910_3562702_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563553_3564009_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564027_3564954_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565007_3566294_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567224_3568097_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568093_3569044_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569142_3570093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011720	Bordetella pertussis strain I113 chromosome, complete genome	4103237	4002305	4067217	4103237	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4002305_4002791_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002879_4003017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003009_4003990_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004256_4005066_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005105_4005786_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005779_4006238_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006249_4006612_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006694_4007378_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007433_4007742_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007760_4008075_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008071_4010546_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010553_4011945_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011941_4012127_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012105_4012807_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012803_4013625_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013605_4014730_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014722_4015742_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015947_4016838_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017082_4017874_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017956_4018331_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018308_4019718_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019710_4021093_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021427_4023032_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023109_4024081_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024091_4025018_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025408_4026359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026528_4027755_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027954_4028821_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028813_4029776_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029876_4030827_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|4030925_4031876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031974_4032925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032921_4034415_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034411_4037519_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037515_4040584_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040580_4041831_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042011_4042764_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042805_4043450_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043458_4044439_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044538_4045282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045364_4045712_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045809_4046652_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046696_4047584_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047610_4047799_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047896_4049354_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049340_4050867_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050885_4051353_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051352_4052375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052495_4053236_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053290_4054391_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054392_4055583_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055702_4056719_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057037_4057709_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057705_4058614_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058825_4059473_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063333_4064401_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064411_4065221_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065310_4066084_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4066084_4066249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4066266_4067217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
