The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	27282	70036	4104253	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	77634	136108	4104253	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023999620.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	164894	225405	4104253	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	233337	286925	4104253	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	676450	737640	4104253	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|676450_677401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|677897_678767_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|678763_679585_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|679783_680275_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|680293_681367_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|681413_682517_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|682592_683213_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|683233_683743_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|683797_684049_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|684112_685246_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|685253_685640_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|685636_688156_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|688584_688923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|688919_689426_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|689487_690288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|690398_691340_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|691433_692969_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|694648_696499_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|696502_697336_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|697335_698277_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|698528_699500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|699641_701930_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|702236_703145_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|703199_704165_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|704239_705901_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|705972_706683_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|706649_706814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|706831_707782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|708480_708864_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|708921_709524_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|709541_709943_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|710076_710970_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|710966_711548_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|712342_713077_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|713117_714167_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|714314_714893_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|715279_716257_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|716350_720745_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|720945_721794_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|721952_722765_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|722820_723771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|723869_724670_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|724731_725115_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|725126_726560_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|726766_727096_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|727098_727848_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|728030_728951_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|728997_729210_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|729232_729655_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|729671_730772_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|730868_732386_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|732461_733301_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|733322_734204_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|734285_735380_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|735673_736624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|736698_737640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	742964	789155	4104253	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|742964_743990_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|744030_744270_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|744339_745929_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|745928_746477_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|746557_747130_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|747148_748060_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|748133_749102_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|749224_750298_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|750302_752123_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|752199_753150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|753238_753574_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|753707_754358_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|754379_755798_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|755867_756623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|756591_757350_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|757360_758242_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|758258_758966_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|758968_759727_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|759936_761679_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|761671_762196_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|762235_763030_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|763197_764271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|764369_765320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|765571_765778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|765849_766461_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|767015_767267_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|767259_767949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|767966_768188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|768205_769156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|769795_770281_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|770267_771545_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|771547_772966_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|772994_774050_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|774055_774298_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|774420_775023_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|775451_776402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|777076_777328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|777390_777873_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|777874_778075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|778074_778470_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|778466_778865_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|778861_779284_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|779291_779792_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|780046_780565_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|780574_780904_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|780921_781212_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|781237_783850_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|783859_784219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|784286_784820_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|784816_785206_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|785198_789155_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	795321	850300	4104253	transposase,tRNA	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|795321_797052_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|797104_797533_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|797535_798216_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|798215_798674_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|798710_799685_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|799701_801018_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|801049_801547_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|801633_802323_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|802322_803372_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|803368_804163_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|804331_804682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|804657_805215_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|806344_807295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|809432_810662_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|810664_812107_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|812211_813357_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|813388_814186_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|814210_815770_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|815766_818139_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|818248_819352_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|819351_820044_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|820187_820889_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|820873_821251_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|821982_822933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|823092_823965_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|824305_824524_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|824563_825943_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|825984_827382_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|827421_829074_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|829077_829962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|829961_830903_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|830981_832601_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|832767_833583_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|833650_834220_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|834220_835171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|835825_836923_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|836956_838222_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|838379_839330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|839428_840379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|840622_841213_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|841228_843673_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|843792_844764_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|844895_845420_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|845379_846330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|846551_848747_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|848819_849248_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|849349_850300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	901893	950915	4104253	transposase,holin	Acinetobacter_phage(25.0%)	44	NA	NA
WP_005013747.1|901893_902844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|902942_903893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|903991_904648_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|904795_907504_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|907513_908533_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|908529_909480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|909578_910067_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|910063_910747_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|910776_914232_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|914267_915128_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|915256_916174_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|916311_917292_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|917351_919142_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|919138_919915_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|919924_920443_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|920555_922826_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|923037_925269_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|925569_925899_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|925915_927400_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|927410_928913_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|928909_930922_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|930939_931248_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|931244_931892_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|931909_932398_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|932419_933493_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|933492_935820_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|935835_937203_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|937199_937694_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|937739_938996_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|938998_939622_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|939696_940173_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|940209_940569_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|940757_941915_-	porin	NA	NA	NA	NA	NA
WP_023998171.1|942015_942210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|942227_943178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|943195_943750_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|943751_944186_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|944182_944617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|944600_945404_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|945420_946236_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|946232_947048_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|947194_947896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|947923_949882_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|949964_950915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	973938	1089751	4104253	transposase,holin	Bacillus_phage(12.5%)	98	NA	NA
WP_023994644.1|973938_974955_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|975151_976135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|977733_979122_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|979152_980142_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|980252_981485_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|981766_982567_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|982589_984821_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|985608_986055_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|986076_986823_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|986966_987944_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|988577_989189_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|989182_990400_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|990540_991491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|991487_992207_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|992327_994487_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|994577_994847_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|995140_995668_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|995686_996466_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|996633_997650_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|997722_998214_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|998224_999940_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1001103_1002054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|1002050_1003883_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1004281_1004941_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|1005034_1005181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|1005289_1005457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1005468_1006149_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1006430_1007147_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1007161_1008463_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|1010607_1013496_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1013719_1015072_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1015100_1015622_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1015618_1017073_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1017107_1017356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1017461_1018337_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1018362_1019418_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1019430_1020222_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1020254_1021625_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929969.1|1022801_1023752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1023850_1024801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1024853_1025075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1025234_1025447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1025566_1026685_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|1027190_1027442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1027554_1028505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1028501_1028885_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|1028939_1030754_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1030903_1031731_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1031776_1032757_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1032753_1032966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1032962_1034144_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1034307_1035042_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1035043_1037656_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1037791_1039705_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1040320_1040731_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1040828_1041914_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1042012_1042963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|1042959_1043934_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|1044058_1044970_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|1045246_1045639_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|1045768_1046719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|1046748_1046931_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|1047703_1048885_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|1049100_1049778_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|1049774_1050500_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|1050625_1051207_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|1051577_1054259_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|1054258_1055392_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|1055384_1056470_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|1056556_1057456_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|1057452_1058781_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|1058795_1059467_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|1059654_1061370_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|1061371_1061731_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|1061922_1062237_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|1062279_1063500_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|1063496_1064438_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|1064434_1065424_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|1065458_1066043_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1066141_1067092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1067172_1068084_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1068144_1069290_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1069309_1070224_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1070295_1071045_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1071044_1071974_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1072217_1074044_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1074126_1074768_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|1074990_1075992_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1077828_1078893_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1079690_1080599_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1082086_1083361_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1083514_1083895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1083902_1084775_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1085080_1085461_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1085671_1086397_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1086492_1087443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1087547_1088597_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1088734_1089751_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1113555	1168647	4104253	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1113555_1114506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1114604_1115345_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1115539_1117576_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1117593_1118604_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1118721_1119915_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1119944_1120718_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1120714_1121905_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1121930_1122869_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1122865_1125214_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1125368_1126010_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1126113_1127247_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1127339_1127492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1127523_1128072_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1128090_1128576_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1128753_1129692_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1129694_1130012_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1130057_1131002_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1132682_1133333_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1133386_1133722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1133718_1134579_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1134595_1134877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1134950_1135214_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1135457_1136408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1136706_1137444_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1137879_1138203_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1138237_1138798_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1138918_1139794_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1139806_1140754_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1140855_1141149_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1141175_1143233_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1143247_1143748_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1143821_1145528_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1146391_1147444_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1147496_1147886_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1147894_1148527_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1148626_1149643_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1150431_1151481_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1151477_1153121_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1153117_1154005_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1154145_1154619_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1154608_1155631_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1155627_1157055_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1157992_1159009_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1159341_1160277_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1160326_1162207_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1162273_1162618_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1162762_1163899_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1163895_1164969_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1165126_1166563_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1166653_1167295_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1167630_1168647_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1174637	1223789	4104253	transposase,holin,tRNA,protease	Catovirus(22.22%)	44	NA	NA
WP_003819794.1|1174637_1175051_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1175052_1175412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1175454_1176999_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1177082_1177913_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1177947_1179102_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1179144_1180017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1180133_1182422_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1183628_1184093_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1184119_1185070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1185087_1185225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1185437_1186214_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1186258_1187116_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1187137_1188154_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1188288_1189329_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1189523_1191605_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1191840_1193334_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1193564_1194359_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1194579_1195938_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1195934_1196777_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1196795_1198682_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1198623_1198875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1198919_1199552_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1199570_1200173_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1200324_1201275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1201855_1202563_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1202921_1203908_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1204047_1205061_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1205057_1206008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1206025_1206166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1206120_1206579_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1206615_1207929_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1207946_1208318_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1208314_1209778_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1209918_1210647_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1210628_1213478_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1213690_1214641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1214808_1215633_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1215632_1216511_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1217415_1218531_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1218559_1219354_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1219350_1221216_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1221294_1221927_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1221923_1222226_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1222268_1223789_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1406078	1474565	4104253	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1406078_1407029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1407797_1408436_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1409325_1409772_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1409853_1410555_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1410555_1411323_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1411319_1412558_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1412557_1413484_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1413586_1414702_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1414717_1415668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1416021_1416603_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1416599_1417433_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1417643_1418957_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1419133_1420015_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1420034_1420886_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1420938_1422027_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1422137_1423265_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1423499_1424111_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1424209_1425160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1425381_1425759_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1425906_1426404_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1426400_1426928_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1427061_1427877_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1427889_1429071_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1429118_1430012_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1430138_1430609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1430734_1431562_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1431590_1432367_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1432363_1432639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1432653_1433118_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1433129_1433831_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1433940_1434441_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1434523_1435702_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1437329_1437665_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1437852_1439301_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1439358_1439703_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1439809_1440349_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1440441_1441392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1441409_1441649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1442130_1442562_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1442743_1443148_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1444384_1444708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1444710_1445598_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1445630_1446056_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1446127_1446481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1446720_1447227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1447265_1448597_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1448656_1449472_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1449468_1450323_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1453385_1455929_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1457295_1459050_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1459046_1461167_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1461171_1463367_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1463363_1466705_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1469507_1470458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1470523_1470703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1470819_1471575_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1471561_1472707_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1473614_1474565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1535056	1590544	4104253	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1535056_1536007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1537208_1537655_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1537647_1539123_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1539119_1539875_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1539867_1540878_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1540867_1542544_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1542856_1543189_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1543202_1543598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1543607_1543934_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1543930_1544257_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1544183_1545206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1545202_1545553_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1545600_1546029_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1546036_1547410_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1547550_1547928_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1548190_1549498_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1549558_1550389_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1550385_1550874_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1550915_1552436_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1552479_1552956_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1553759_1556357_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1556386_1557208_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1557934_1558684_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1558867_1559746_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1559843_1560560_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1560574_1561135_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1561301_1562066_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1562085_1562943_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1562939_1564139_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1564178_1565513_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1565565_1567902_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1568027_1568591_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1568599_1569691_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1569762_1570218_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1570218_1571013_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1571009_1572191_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1572177_1572783_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1572779_1573553_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1573564_1574392_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1574553_1576917_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1576984_1577704_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1577827_1578253_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1578287_1579238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1579355_1580282_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1580347_1581505_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1581485_1581953_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1582100_1583051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1583067_1583502_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1583491_1583842_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1584038_1585193_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1585189_1586362_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1586409_1587303_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1587348_1587786_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1587845_1588535_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1588544_1589495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1589593_1590544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1883114	1931129	4104253	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1883114_1884065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1884163_1886764_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1886870_1887875_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1887983_1889324_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1889364_1890393_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1890588_1891134_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1891130_1891691_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1891789_1892740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1892777_1893365_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1893382_1893766_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1895125_1896418_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1896552_1897593_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1897690_1898707_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1898974_1899622_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1899747_1900506_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1900490_1901270_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1901287_1902172_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1902168_1902948_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1903052_1903652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1903940_1904693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1904811_1906212_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1906235_1906634_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1906809_1907010_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1907148_1907877_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1908010_1909426_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1909429_1910293_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1910305_1911055_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1911237_1913253_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1913234_1913903_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1914677_1915628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1915726_1916677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1916825_1917164_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1917221_1917383_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1917414_1917615_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1917880_1920454_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1920524_1923074_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1925624_1926113_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1926204_1927356_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1927409_1928231_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1928269_1929499_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1929627_1930068_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1930178_1931129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	1992691	2051961	4104253	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1992691_1993642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1993766_1994576_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1994776_1995727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1997000_1998218_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1999274_2000177_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2000253_2001126_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2001256_2001625_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2001682_2002729_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2002924_2004181_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2004185_2005523_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2005672_2006629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2006731_2007664_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2007779_2008100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2008092_2008452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2008499_2010074_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2010126_2011071_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2011088_2011919_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2011911_2013546_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2013542_2014898_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2015804_2017382_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2017385_2018660_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2018757_2019132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2020847_2021981_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2022018_2022624_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2022620_2023439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2023510_2026135_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2026121_2026376_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2026442_2027024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2027327_2027588_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2027753_2028377_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2028376_2029150_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2029146_2030355_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2030380_2030854_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2030927_2031878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2031976_2032927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2033025_2034375_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2035140_2035896_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2035988_2038871_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2039193_2039619_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2039646_2040795_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2040791_2041298_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2041304_2042600_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2042658_2043945_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2043946_2044585_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2044587_2045748_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2045774_2047130_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2047133_2048204_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2048342_2048579_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2048666_2049773_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2049738_2051043_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2051061_2051961_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2062201	2106524	4104253	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|2062201_2063152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063250_2064201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2064400_2065486_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2065501_2066263_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2066259_2067219_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2067281_2067782_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2067814_2068558_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2068653_2068893_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2068906_2069059_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2069144_2070635_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2070726_2071665_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2071661_2071838_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2071840_2072503_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2074124_2074268_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2074264_2075239_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2075133_2075388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2075405_2076356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2076352_2077627_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2077730_2078924_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2078920_2079574_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2079570_2081007_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2080994_2081354_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2082168_2082309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2082326_2083277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2084322_2086188_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2086445_2087966_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2088053_2088704_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2089652_2090948_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2090969_2091854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2091952_2092828_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2092817_2093174_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2093304_2094279_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2094408_2094588_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2094685_2095210_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2095220_2096057_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2096169_2096541_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2096537_2097089_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2097104_2098796_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2098844_2099525_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2099772_2100237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2100406_2101336_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2101348_2101996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2102069_2103887_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2103970_2104921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2105573_2106524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2135258	2199627	4104253	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2135258_2136209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2136430_2137381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2137479_2138445_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2138582_2139482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2142076_2143564_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2143574_2144771_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2144843_2146163_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2146159_2147035_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2147065_2148214_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2148231_2148546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2148567_2149290_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2149289_2150108_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2150112_2150640_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2150645_2151902_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2152260_2153400_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2153477_2154350_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2155220_2156171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2156130_2156766_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2157125_2158448_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2158766_2159588_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2161012_2161585_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2161624_2163454_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2163416_2164475_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2164512_2164974_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2165058_2165805_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2167295_2170526_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2170592_2171924_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2172176_2172551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2172653_2173832_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2173842_2174433_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2174543_2175350_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2175375_2176170_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2177170_2178145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2178303_2178816_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2178972_2179944_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2181688_2182495_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2182491_2183793_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2183743_2184508_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2184621_2185392_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2185476_2186664_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2186736_2187111_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2187211_2188474_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2188470_2189328_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2189500_2190502_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2190953_2191904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2193419_2194619_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2194987_2195224_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2195287_2195455_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2195568_2197374_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2197627_2198578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2198676_2199627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2386095	2447443	4104253	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2386095_2387046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2387162_2387882_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2388054_2389041_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2389041_2389524_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2389527_2390811_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2390807_2391746_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2391742_2393452_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2393461_2394709_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2396319_2397609_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2398746_2399505_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2400181_2400925_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2400999_2401740_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2401935_2402772_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2402822_2403593_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2403642_2404695_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2404691_2405318_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2405314_2406349_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2406527_2407544_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2407642_2408593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2411333_2412623_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2412741_2413179_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2413222_2414431_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2414577_2415042_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_054604408.1|2415065_2416016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2417000_2417774_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2417770_2418769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2418853_2419630_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2419785_2421390_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2421770_2422895_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2423021_2423645_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2423641_2425543_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2425591_2426386_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2426398_2427400_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2427396_2427903_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2427895_2428744_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2428841_2429384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2429427_2430378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2430533_2430860_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2430856_2431141_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2431137_2431617_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2431613_2433242_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2433238_2433583_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2433582_2436516_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2437674_2438625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2438723_2439020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2439126_2440044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2440048_2440762_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2440775_2441747_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2443466_2443847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2443850_2445038_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2445461_2446199_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2446492_2447443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2468234	2539335	4104253	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2468234_2469185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2469737_2471363_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2471412_2472447_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2472449_2473796_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2473792_2475307_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2475297_2476308_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2476781_2477723_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2477731_2478700_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2480239_2481208_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2481385_2482375_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2482421_2483180_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2483369_2484107_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2484205_2485156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2485340_2486123_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2486116_2486818_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2487057_2487660_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2488986_2489937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2489933_2491490_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2491482_2492256_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2492314_2493265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2493346_2494522_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2496536_2497562_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2497573_2498863_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2498885_2499983_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2499979_2500870_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2500866_2502951_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2502982_2504152_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2504193_2504934_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2504933_2505704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2506028_2506196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2506559_2507345_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2507371_2509456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2509623_2511579_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2511902_2512403_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2512501_2514028_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2514165_2515053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2515067_2516021_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2516072_2518163_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2518178_2518565_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2521258_2522062_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2523355_2524258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2524322_2525099_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2525420_2526470_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2526593_2528264_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2528268_2529063_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2529161_2530112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2530131_2531037_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2531114_2531813_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2531972_2532917_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2532926_2534414_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2534413_2535481_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2535544_2536957_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2537142_2538363_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2538384_2539335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2623535	2674707	4104253	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2623535_2624486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2624584_2625355_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2625351_2626023_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2626019_2626661_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2626673_2627594_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2627754_2628915_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2628956_2629907_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2630571_2630772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2630894_2632589_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2632710_2632980_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2633095_2633494_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2633504_2634461_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2634597_2635143_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2635163_2637113_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2637500_2638277_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2638282_2638675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2639096_2640047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2640043_2641141_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2641172_2642123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2643904_2645146_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2645157_2645931_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2645957_2646908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2647006_2647789_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2647877_2649104_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2649829_2651215_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2651233_2651839_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2651835_2653692_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2653688_2654489_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2654503_2655697_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2655764_2656739_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2656861_2658085_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2658195_2660400_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2660694_2661354_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2661361_2661568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2661906_2662662_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2662677_2662839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2662932_2663448_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2663720_2664038_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2663982_2664627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2664752_2666108_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2666154_2667495_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2667596_2668229_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2668228_2670589_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2670630_2671590_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2671576_2672263_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2672259_2672592_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2672707_2673658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2673756_2674707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2773002	2813671	4104253	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2773002_2773953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2774063_2774246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2774345_2774942_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2775125_2776217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2776716_2777127_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2777185_2777527_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2777532_2779950_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2779962_2780985_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2781059_2781419_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2781434_2781632_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2781967_2782918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2783112_2783562_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2783558_2784509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2784619_2786068_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2786182_2786464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2786567_2787518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2787762_2788476_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2788598_2788826_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2789120_2789759_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2789867_2790902_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2790898_2791849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2792264_2792789_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2792792_2793062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2793260_2794322_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2794405_2796040_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2796041_2796845_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2796873_2797833_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2797836_2799351_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2799387_2800392_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2800823_2801294_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2801329_2801941_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2801971_2802595_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2802675_2804208_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2804242_2805484_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2805527_2806559_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2806555_2807725_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2807718_2808399_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2808560_2809403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2809565_2810537_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2810708_2811587_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2811609_2812680_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2812720_2813671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2817782	2899917	4104253	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2817782_2818733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2819482_2819917_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2819909_2821145_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2821152_2821947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2821943_2822747_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2822773_2823751_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2823779_2825351_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2825361_2826183_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2827907_2829338_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2829350_2830040_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2830135_2831476_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2831477_2831735_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2832088_2833681_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2833777_2835238_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2835460_2836072_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2839818_2840769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2841184_2843821_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2843817_2844942_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2844938_2846321_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2846456_2846924_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2847842_2848988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2848989_2850720_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2850837_2851146_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2851158_2851971_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2852851_2853940_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2855142_2855931_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2855970_2857575_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2857655_2858396_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2858403_2858898_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2859270_2860290_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2860286_2861669_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2861701_2862562_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2863565_2864447_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2864505_2864943_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2865033_2866005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2866043_2866988_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2867083_2867893_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2867969_2868344_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2868450_2869143_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2869135_2869552_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2869662_2870295_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2870323_2870767_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2870788_2871880_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2871934_2872735_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2872870_2873491_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2873630_2874104_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2875243_2876194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2876190_2883852_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2884092_2888139_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2888451_2889033_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2889029_2890328_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2890407_2891436_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2891696_2892647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2892643_2893594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2893910_2894516_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2894569_2895883_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2895957_2896428_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2896427_2897216_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2897226_2898879_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2898966_2899917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2923842	2971551	4104253	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2923842_2924793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2924927_2926034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2926044_2927142_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2927286_2928492_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2928498_2929020_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2929016_2929508_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2929504_2929756_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2929736_2930222_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2930357_2933819_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2933836_2934721_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2934730_2935162_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2935408_2935912_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2935989_2937390_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2937464_2938340_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2938336_2939344_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2939811_2940117_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2940207_2940798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2940988_2942005_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077069106.1|2942196_2944533_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2944615_2945050_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2945148_2946099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2946197_2947148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2947144_2947939_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2947970_2948675_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2948749_2949550_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2949546_2949954_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2949950_2950592_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2950584_2952585_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2953845_2955177_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2955173_2956124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2957830_2958097_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2958804_2959143_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2963696_2964299_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2964395_2965685_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2965742_2966474_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2966470_2967274_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2967270_2968359_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2968355_2969285_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2969433_2970579_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2970600_2971551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	2979548	3043296	4104253	transposase,protease	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2979548_2981864_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2981919_2984088_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2984084_2989274_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2989363_2989678_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2989905_2990151_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2990245_2990764_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2990863_2992069_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2992184_2993582_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2993698_2994277_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2994349_2995741_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2995908_2996859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2997139_2997760_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2997756_2998170_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2998166_2999210_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2999265_2999454_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2999463_3000228_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3000318_3000975_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3001066_3001825_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3001850_3003452_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3003652_3004657_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3004757_3005021_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3005138_3005915_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3006505_3007456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3009839_3010952_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3011008_3011959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|3011976_3012243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|3012167_3012389_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|3012602_3014009_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|3014005_3015310_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|3015306_3016494_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|3016710_3017163_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|3017165_3017630_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|3017709_3019389_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|3019493_3020471_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|3020550_3021519_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|3021539_3022913_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|3022909_3023746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|3023862_3024318_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|3024333_3024606_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|3024698_3025022_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|3025069_3025450_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|3025669_3026467_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|3026623_3028486_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|3028535_3029447_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|3029451_3029718_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|3029804_3030674_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|3030809_3031775_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|3031945_3032956_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|3033103_3034255_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|3035397_3036870_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|3036880_3037291_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|3037354_3038401_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|3038507_3039386_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|3039399_3040596_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|3040672_3042349_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|3042345_3043296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	3052055	3097625	4104253	transposase	Bacillus_virus(20.0%)	45	NA	NA
WP_010930176.1|3052055_3053006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|3053080_3054235_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3054291_3055242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3055340_3055646_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3055674_3056109_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3056110_3057355_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3057351_3058062_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3058076_3058988_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|3059175_3059340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3059357_3060308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3060399_3060804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3060800_3061259_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3061265_3062174_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3062170_3063037_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3063023_3063851_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3063861_3064989_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_077069107.1|3066066_3067305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3067346_3068609_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3068615_3069368_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3069419_3069605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3069880_3070345_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3070376_3071036_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3071180_3073289_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3073285_3074236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3074339_3074960_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3075051_3075804_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3076938_3078063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3078108_3078477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3078718_3079669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3080704_3081247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3081444_3081615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3081632_3082583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3082579_3083545_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3083614_3084451_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3084963_3086073_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3086134_3087085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3087277_3088060_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3088073_3088823_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3088850_3090197_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3090222_3091152_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3091267_3092173_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3092190_3093390_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3093462_3094155_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3094203_3096630_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3096674_3097625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	3467031	3520772	4104253	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_010929956.1|3467031_3467982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3468386_3469031_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3469055_3469640_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3469740_3470358_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3470360_3472076_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3472072_3472381_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3472397_3473015_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3473059_3473362_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3473462_3474317_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3474504_3474729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3474898_3475171_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3475588_3475996_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3476365_3477160_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3477260_3478496_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3478564_3479581_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3479592_3480969_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3480965_3482162_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3482158_3483697_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3483693_3484953_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3486893_3487844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3488610_3489705_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3489697_3491032_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3490985_3491669_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3491694_3492858_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3492854_3493856_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3493855_3494728_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3494724_3495474_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3495470_3496262_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3496258_3497398_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3497673_3498459_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3498492_3499275_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3499278_3499668_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3500807_3501671_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3501706_3502795_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3502791_3503742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3504095_3507074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3508000_3508879_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3510827_3511778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3511774_3512242_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3512284_3513055_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3513075_3513876_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3513886_3515296_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3515390_3516176_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3516415_3517432_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3517539_3517932_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3518069_3518750_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3518754_3519726_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3519821_3520772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	3526927	3586227	4104253	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3526927_3528691_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3528802_3529681_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3529793_3530609_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3530612_3530864_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3530948_3531965_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3532295_3532517_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3534877_3535795_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3536292_3537501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3537580_3539152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3539269_3540205_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3540393_3541338_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3541905_3547623_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3547628_3548756_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3548811_3549438_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3549709_3550726_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3550821_3551532_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3551528_3552518_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3552613_3554245_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3554247_3554985_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3555140_3556013_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3556281_3557502_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3557498_3558158_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3558229_3558862_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3558891_3559410_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3559420_3560530_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3560576_3561431_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3561432_3562335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3563557_3564508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3566264_3567254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3567250_3567409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3567429_3568218_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3568214_3569246_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3569264_3569828_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3569883_3571404_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3571667_3572372_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3572379_3573117_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3573222_3573597_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3573639_3574929_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3574925_3576095_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3576091_3576931_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3576990_3577926_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3577938_3578889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3578987_3579950_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3579981_3580341_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3580465_3581368_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3581369_3583142_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3583176_3583953_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_077069109.1|3585276_3586227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	3601165	3661471	4104253	transposase,tRNA,protease	Planktothrix_phage(11.11%)	49	NA	NA
WP_005012808.1|3601165_3602116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3602244_3603378_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3603421_3604327_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3604329_3606030_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3606026_3606947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3606954_3607932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3607990_3609025_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3610999_3611236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3611362_3612226_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3612314_3613136_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3613215_3613953_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3613949_3614942_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3615055_3615718_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3615762_3616911_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3619234_3620185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3620525_3621476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3621574_3622525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3622821_3623319_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3623361_3625137_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3625144_3626011_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3626017_3626752_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3627921_3628716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3629005_3629596_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3629629_3630958_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3631032_3632178_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3632289_3633288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3633250_3633685_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3635201_3636086_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3636082_3637288_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3637284_3638145_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3638257_3640048_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3640088_3640754_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3640754_3641063_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3641228_3642515_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3643948_3644899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3646850_3648065_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3648170_3649160_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3649156_3649765_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3649777_3650407_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3650403_3651024_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3651055_3651847_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3652698_3653154_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3653172_3654099_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3654152_3655439_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3656369_3657242_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3657238_3658189_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3658287_3659238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929912.1|3659234_3660029_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_010929911.1|3660025_3661471_-|protease	protease CptA	protease	A0A0R6PIZ1	Moraxella_phage	26.1	6.0e-20
>prophage 31
NZ_CP011725	Bordetella pertussis strain I263 chromosome, complete genome	4104253	4026424	4079856	4104253	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4026424_4027375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027544_4028771_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028970_4029837_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029829_4030792_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030892_4031843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031941_4032892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032990_4033941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033937_4035431_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035427_4038535_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038531_4041600_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041596_4042847_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043027_4043789_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043821_4044472_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044474_4045314_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045554_4046298_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046380_4046728_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046825_4047668_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047712_4048600_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048626_4048815_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048912_4050370_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050356_4051883_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051901_4052369_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052368_4053391_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053511_4054231_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054306_4055407_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055408_4056599_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056718_4057735_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058053_4058725_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058721_4059630_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059841_4060489_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064340_4065417_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065427_4066237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066326_4067100_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067100_4067265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067282_4068233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068121_4069144_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069133_4070288_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070327_4071740_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071864_4072731_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072732_4073557_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073553_4074315_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074395_4075082_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075255_4076263_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076259_4077039_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077096_4078359_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078905_4079856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
