The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	27282	70036	4103217	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	77634	136108	4103217	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023999620.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	164894	225417	4103217	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|184327_188014_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188074_188638_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188645_189068_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189095_189515_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189543_189990_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190116_190614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190768_193039_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193114_194320_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194418_195369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195471_196107_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196103_196997_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197391_198492_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198573_198948_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|199007_201872_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202016_202757_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202826_204038_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204066_205035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205648_206599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206755_207079_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207183_208224_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208229_209009_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209054_209351_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209376_209652_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209708_210353_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210352_211039_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211237_212020_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212070_212796_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212827_214177_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214288_215221_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215678_218474_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219067_221911_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222081_222801_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222839_223388_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223542_224442_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224466_225417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	233349	286937	4103217	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233349_234300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234386_235337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235333_236284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236382_237180_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238129_238540_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239561_240305_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240348_241392_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241562_243665_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245075_246032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246050_246542_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246538_247894_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247894_248593_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248589_249291_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249543_250593_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250698_251640_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251636_253526_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253612_254251_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254393_255779_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255709_256246_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256397_257789_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257805_258786_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258921_259905_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259969_260869_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260975_262730_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262737_263862_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263875_264856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265586_266537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267096_267642_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267767_269345_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269360_270515_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270528_270654_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270650_272402_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272398_274078_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274140_274689_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275831_276110_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277153_278104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278090_278306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278381_278543_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279209_279659_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279668_280280_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280438_281287_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281312_282695_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282759_283401_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283540_283999_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284023_284800_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284853_285990_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285986_286937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	676462	737651	4103217	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|676462_677413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|677888_678779_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|678775_679597_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|679794_680286_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|680304_681378_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|681424_682528_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|682603_683224_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|683244_683754_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|683808_684060_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|684123_685257_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|685264_685651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|685647_688167_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|688595_688934_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|688930_689437_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|689498_690299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|690409_691351_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|691444_692980_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|694659_696510_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|696513_697347_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|697346_698288_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|698539_699511_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|699652_701941_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|702247_703156_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|703210_704176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|704250_705912_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|705983_706694_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|706660_706825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|706842_707793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|708491_708875_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|708932_709535_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|709552_709954_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|710069_710981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|710977_711559_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|712353_713088_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|713128_714178_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|714325_714904_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|715290_716268_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|716361_720756_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|720956_721805_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|721963_722776_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|722831_723782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|723880_724681_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|724742_725126_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|725137_726490_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|726777_727107_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|727109_727859_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|728041_728962_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|729008_729221_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|729243_729666_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|729682_730783_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|730879_732397_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|732472_733312_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|733333_734206_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|734296_735391_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|735684_736635_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|736709_737651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	742975	789166	4103217	terminase,tRNA,transposase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|742975_744001_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|744041_744281_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|744350_745940_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|745939_746488_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|746568_747141_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|747159_748071_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|748144_749113_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|749235_750309_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|750313_752134_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|752210_753161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|753249_753585_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|753718_754369_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|754390_755809_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|755878_756634_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|756602_757361_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|757371_758253_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|758269_758977_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|758979_759738_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|759947_761690_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|761682_762207_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|762246_763041_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|763208_764282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|764380_765331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|765582_765789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|765860_766472_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|767026_767278_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|767270_767960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|767977_768199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|768216_769167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|769806_770292_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|770278_771556_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|771558_772977_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|773005_774061_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|774066_774309_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|774431_775034_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|775462_776413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|777087_777339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|777401_777884_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|777897_778086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|778085_778481_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|778477_778876_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|778872_779295_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|779302_779803_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|780057_780576_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|780585_780915_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|780932_781223_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|781248_783861_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|783870_784230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|784297_784831_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|784827_785217_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|785209_789166_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	795332	850311	4103217	tRNA,transposase	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|795332_797063_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|797115_797544_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|797546_798227_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|798226_798685_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|798721_799696_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|799712_801029_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|801060_801558_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|801644_802334_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|802333_803383_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|803379_804174_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|804342_804693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|804668_805226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|806355_807306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|809443_810673_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|810675_812118_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|812222_813368_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|813399_814197_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|814221_815781_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|815777_818150_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|818259_819363_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|819362_820055_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|820198_820900_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|820884_821262_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|821993_822944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|823103_823976_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|824316_824535_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|824574_825954_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|825995_827393_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|827432_829085_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|829088_829973_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|829972_830914_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|830992_832612_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|832778_833594_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|833661_834231_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|834231_835182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|835836_836934_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|836967_838233_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|838390_839341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|839439_840390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|840633_841224_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|841239_843684_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|843803_844775_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|844906_845431_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|845390_846341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|846562_848758_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|848830_849238_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|849360_850311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	949975	1089762	4103217	transposase	Bacillus_phage(11.76%)	116	NA	NA
WP_005013747.1|949975_950926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|951146_951815_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|951938_953045_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|953057_956171_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|956167_957661_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|957675_958347_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|958390_958885_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|959025_959673_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|959776_961825_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|961821_963834_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|963859_965194_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|965302_966295_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|966361_968446_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|968470_969442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|969570_970602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|970605_971757_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|971927_972851_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|972928_973753_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|973949_974966_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|975162_976146_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|977744_979133_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|979163_980153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|980263_981496_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|981777_982578_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|982600_984832_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|985619_986066_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|986087_986834_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|986977_987955_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|988588_989200_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|989193_990411_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|990551_991502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|991498_992218_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|992338_994498_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|994588_994858_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|994946_995153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|995151_995679_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|995697_996477_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|996644_997661_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|997733_998225_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|998235_999951_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1001114_1002065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|1002061_1003894_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1004292_1004952_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|1005479_1006160_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1006441_1007158_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1007172_1008474_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|1010618_1013507_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1013730_1015083_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1015111_1015633_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1015629_1017084_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1017118_1017367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1017472_1018348_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1018373_1019429_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1019441_1020233_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1020265_1021636_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929969.1|1022812_1023763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1023861_1024812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1024864_1025086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1025245_1025458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1025577_1026696_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|1026792_1027008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|1027201_1027453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1027565_1028516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1028512_1028896_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|1028950_1030765_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1030914_1031742_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1031787_1032768_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1032764_1032977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1032973_1034155_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1034318_1035053_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1035054_1037667_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1037802_1039716_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1040331_1040742_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1040839_1041925_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1042023_1042974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|1042970_1043945_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|1044069_1044981_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|1045257_1045650_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|1045779_1046730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|1046759_1046942_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|1047714_1048896_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|1049111_1049789_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|1049785_1050511_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|1050636_1051218_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|1051588_1054270_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|1054272_1055403_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|1055395_1056481_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|1056567_1057467_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|1057463_1058792_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|1058806_1059478_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|1059665_1061381_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|1061382_1061742_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|1061933_1062248_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|1062290_1063511_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|1063507_1064449_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|1064445_1065435_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|1065469_1066054_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1066152_1067103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1067183_1068095_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1068155_1069301_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1069320_1070235_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1070306_1071056_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1071055_1071985_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1072228_1074055_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1074137_1074779_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|1074968_1076003_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1077839_1078904_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1079701_1080610_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1082097_1083372_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1083525_1083906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1083913_1084786_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1085091_1085472_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1085682_1086408_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1086503_1087454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1087558_1088608_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1088745_1089762_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1113559	1175055	4103217	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	54	NA	NA
WP_010929584.1|1113559_1114510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1114608_1115349_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1115543_1117580_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1117597_1118608_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1118725_1119919_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1119948_1120722_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1120718_1121909_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1121934_1122873_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1122869_1125218_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1125372_1126014_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1127343_1127496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1127527_1128076_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1128094_1128580_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1128757_1129696_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1129698_1130016_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1130061_1131006_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1132686_1133337_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1133390_1133726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1133722_1134583_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1134599_1134881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1134954_1135218_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1135461_1136412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1136710_1137448_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1137883_1138207_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1138241_1138802_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1138922_1139798_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1139810_1140758_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1140859_1141153_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1141179_1143237_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1143251_1143752_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1143825_1145532_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1146395_1147448_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1147500_1147890_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1147898_1148531_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1148630_1149647_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1150477_1151485_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1151481_1153125_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1153121_1154009_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1154149_1154623_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1154612_1155635_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1155631_1157059_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1157996_1159013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1159345_1160281_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1160330_1162211_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1162277_1162622_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1162766_1163903_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1163899_1164973_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1165130_1166567_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1166657_1167299_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1167634_1168651_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1171797_1173219_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1173482_1174199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1174283_1174601_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1174641_1175055_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 10
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1184123	1246662	4103217	tRNA,transposase	Planktothrix_phage(18.18%)	50	NA	NA
WP_005013747.1|1184123_1185074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1185091_1185229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1185441_1186218_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1186262_1187120_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1187141_1188158_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1188292_1189333_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1189527_1191609_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1191844_1193338_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1193568_1194363_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1194583_1195942_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1195938_1196781_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1196799_1198686_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1198627_1198879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1198923_1199556_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1199574_1200177_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1200328_1201279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1201859_1202567_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1202925_1203912_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1204051_1205065_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1205061_1206012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1206029_1206170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1206124_1206583_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1206619_1207933_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1207950_1208322_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1208318_1209782_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1209922_1210651_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1210632_1213482_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1213694_1214645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1214812_1215637_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1215636_1216515_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1217419_1218535_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1218563_1219358_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1219354_1221220_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1221298_1221931_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1221927_1222230_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1222272_1223793_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1223799_1224555_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1224584_1225689_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1225791_1227492_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1227473_1228451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1228460_1229741_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1229733_1230429_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1230462_1231290_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1231571_1234802_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1235537_1239464_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1241363_1243160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1243159_1244128_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1244197_1245043_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1245110_1245665_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1245711_1246662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1406083	1474570	4103217	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1406083_1407034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1407802_1408441_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1409330_1409777_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1409858_1410560_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1410560_1411328_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1411324_1412563_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1412562_1413489_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1413591_1414707_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1414722_1415673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1416026_1416608_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1416604_1417438_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1417648_1418962_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1419138_1420020_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1420039_1420891_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1420943_1422032_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1422142_1423270_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1423504_1424116_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1424214_1425165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1425386_1425764_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1425911_1426409_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1426405_1426933_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1427066_1427882_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1427894_1429076_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1429123_1430017_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1430143_1430614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1430739_1431567_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1431595_1432372_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1432368_1432644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1432658_1433123_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1433134_1433836_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1433945_1434446_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1434528_1435707_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1437334_1437670_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1437857_1439306_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1439363_1439708_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1439814_1440354_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1440446_1441397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1441414_1441654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1442135_1442567_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1442748_1443153_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1444389_1444713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1444715_1445603_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1445635_1446061_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1446132_1446486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1446725_1447232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1447270_1448602_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1448661_1449477_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1449473_1450328_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1453390_1455934_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1457300_1459055_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1459051_1461172_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1461176_1463372_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1463368_1466710_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1469512_1470463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1470528_1470708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1470824_1471580_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1471566_1472712_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1473619_1474570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1535061	1590549	4103217	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1535061_1536012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1537213_1537660_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1537652_1539128_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1539124_1539880_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1539872_1540883_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1540872_1542549_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1542861_1543194_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1543207_1543603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1543612_1543939_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1543935_1544262_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1544188_1545211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1545207_1545558_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1545605_1546034_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1546041_1547415_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1547555_1547933_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1548195_1549503_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1549563_1550394_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1550390_1550879_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1550920_1552441_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1552484_1552961_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1553764_1556362_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1556391_1557213_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1557939_1558689_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1558872_1559751_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1559848_1560565_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1560579_1561140_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1561306_1562071_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1562090_1562948_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1562944_1564144_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1564183_1565518_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1565570_1567907_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1568032_1568596_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1568604_1569696_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1569767_1570223_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1570223_1571018_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1571014_1572196_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1572182_1572788_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1572784_1573558_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1573569_1574397_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1574558_1576922_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1576989_1577709_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1577832_1578258_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1578292_1579243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1579360_1580287_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1580352_1581510_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1581490_1581958_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1582105_1583056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1583072_1583507_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1583496_1583847_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1584043_1585198_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1585194_1586367_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1586414_1587308_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1587353_1587791_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1587850_1588540_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1588549_1589500_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1589598_1590549_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1883126	1931141	4103217	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1883126_1884077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1884175_1886776_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1886882_1887887_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1887995_1889336_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1889376_1890405_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1890600_1891146_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1891142_1891703_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1891801_1892752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1892789_1893377_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1893394_1893778_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1895137_1896430_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1896564_1897605_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1897702_1898719_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1898986_1899622_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1899759_1900518_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1900502_1901282_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1901299_1902184_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1902180_1902960_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1902986_1903664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1903952_1904705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1904823_1906224_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1906247_1906646_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1906821_1907022_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1907160_1907889_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1908022_1909438_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1909441_1910305_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1910317_1911067_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1911309_1913265_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1913246_1913915_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1914689_1915640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1915738_1916689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1916837_1917176_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1917233_1917395_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1917426_1917627_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1917892_1920466_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1920536_1923086_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1925636_1926125_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1926216_1927368_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1927421_1928243_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1928281_1929511_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1929639_1930080_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1930190_1931141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	1992703	2051973	4103217	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1992703_1993654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1993778_1994588_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1994788_1995739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1997012_1998230_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1999286_2000189_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2000265_2001138_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2001268_2001637_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2001694_2002741_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2002936_2004193_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2004197_2005535_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2005684_2006641_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2006743_2007676_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2007791_2008112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2008104_2008464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2008511_2010086_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2010138_2011083_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2011100_2011931_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2011923_2013558_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2013554_2014910_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2015816_2017394_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2017397_2018672_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2018769_2019144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2020859_2021993_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2022030_2022636_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2022632_2023451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2023522_2026147_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2026133_2026388_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2026454_2027036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2027339_2027600_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2027765_2028389_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2028388_2029162_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2029158_2030367_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2030392_2030866_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2030939_2031890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2031988_2032939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2033037_2034387_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2035152_2035908_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2036000_2038883_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2039205_2039631_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2039658_2040807_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2040803_2041310_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|2041325_2042612_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|2042661_2043957_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2043958_2044597_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|2044602_2045760_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2045786_2047142_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2047145_2048216_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2048354_2048591_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2048678_2049785_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2049750_2051055_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2051073_2051973_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2062213	2119710	4103217	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|2062213_2063164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063262_2064213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2064412_2065498_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2065513_2066275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2066271_2067195_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2067293_2067818_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2067826_2068570_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2068665_2068905_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2068918_2069071_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2069156_2070647_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2070738_2071677_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2071673_2071850_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2071852_2072515_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2074136_2074280_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2074276_2075251_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2075145_2075400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2075417_2076368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2076364_2077639_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2077742_2078936_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2078932_2079586_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2079582_2081019_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2081006_2081366_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162493101.1|2082180_2082321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|2083285_2085151_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2085408_2086929_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2087016_2087667_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2088615_2089911_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2089932_2090817_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2090915_2091791_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2091780_2092137_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2092267_2093242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2093371_2093551_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2093648_2094173_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2094183_2095020_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2095132_2095504_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2095500_2096052_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2096067_2097759_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2097807_2098488_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2098735_2099200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2099369_2100299_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2100311_2100959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2101032_2102850_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2102933_2103884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2104536_2105487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2105505_2105853_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2105881_2107321_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2107339_2107735_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2107909_2108518_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2108530_2109349_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2109300_2110275_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2110303_2111365_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2111361_2113578_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2113591_2114050_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2114207_2114552_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2114708_2115614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2115700_2116714_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2118693_2119710_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2134221	2198590	4103217	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2134221_2135172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2135393_2136344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2136442_2137408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2137545_2138445_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2141039_2142527_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2142537_2143734_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2143806_2145126_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2145122_2145998_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2146028_2147177_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2147194_2147509_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2147530_2148253_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2148252_2149071_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2149075_2149603_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2149608_2150865_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2151223_2152363_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2152440_2153313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2154183_2155134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2155093_2155729_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2156088_2157411_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2157729_2158551_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2159975_2160548_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2160587_2162417_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2162379_2163438_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2163475_2163937_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2164021_2164768_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2166258_2169489_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2169555_2170887_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2171139_2171514_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2171616_2172795_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2172805_2173396_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2173506_2174313_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2174338_2175133_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2176133_2177108_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2177266_2177779_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2177935_2178907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2180651_2181458_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2181454_2182756_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2182706_2183471_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2183584_2184355_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2184439_2185627_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2185699_2186074_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2186174_2187437_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2187433_2188291_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2188463_2189465_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2189916_2190867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2192430_2193582_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2193950_2194187_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2194250_2194418_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2194531_2196427_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2196590_2197541_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2197639_2198590_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2385058	2446406	4103217	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2385058_2386009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2386125_2386845_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2387017_2388004_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2388004_2388487_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2388490_2389774_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2389770_2390709_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2390705_2392415_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2392424_2393672_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2395282_2396572_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2397709_2398483_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2399144_2399888_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2399962_2400703_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2400898_2401735_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2401785_2402556_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2402605_2403658_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2403654_2404281_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2404277_2405312_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2405490_2406507_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2406605_2407556_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2410296_2411586_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2411704_2412142_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2412185_2413394_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2413540_2414005_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_054604408.1|2414028_2414979_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2415963_2416737_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2416733_2417732_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2417816_2418593_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2418748_2420353_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2420733_2421858_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2421984_2422608_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2422604_2424506_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2424554_2425349_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2425361_2426363_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2426359_2426809_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2426858_2427707_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2427804_2428347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2428390_2429341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2429496_2429823_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2429819_2430101_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2430100_2430580_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2430576_2432205_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2432201_2432546_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2432545_2435479_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2436637_2437588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2437686_2437983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2438089_2439007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2439011_2439725_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2439738_2440710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2442459_2442810_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2442813_2444001_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2444439_2445162_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2445455_2446406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2467197	2538298	4103217	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2467197_2468148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2468700_2470326_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2470375_2471410_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2471412_2472759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2472755_2474270_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2474260_2475271_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2475744_2476686_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2476694_2477663_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2479202_2480171_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2480348_2481338_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2481384_2482143_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2482332_2483070_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2483168_2484119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2484303_2485086_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2485079_2485781_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2486020_2486623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2487949_2488900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2488896_2490453_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2490445_2491219_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2491277_2492228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2492309_2493485_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_023999553.1|2493498_2495376_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2495499_2496525_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2496536_2497826_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2497848_2498946_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2498942_2499833_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2499829_2501914_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2501945_2503115_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2503156_2503897_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2503896_2504667_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2505522_2506308_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2506334_2508419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2508586_2510542_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2510865_2511366_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2511464_2512991_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2513128_2514016_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2514030_2514984_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2515035_2517126_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2517141_2517528_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2520221_2521025_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2522318_2523221_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2523285_2524062_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2524383_2525433_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2525556_2527227_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2527231_2528026_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2528124_2529075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2529094_2530000_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2530077_2530776_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2530935_2531880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2531889_2533377_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2533376_2534444_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2534507_2535920_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2536105_2537326_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2537347_2538298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2622498	2673670	4103217	tRNA,transposase	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2622498_2623449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2623547_2624318_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2624314_2624986_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2624982_2625624_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2625636_2626557_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2626717_2627878_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2627919_2628870_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2629468_2629693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2629857_2631552_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2631673_2631943_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2632058_2632457_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2632467_2633424_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2633560_2634106_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2634126_2636076_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2636463_2637240_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2637245_2637638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2638059_2639010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2639006_2640104_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2640135_2641086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2642867_2644109_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2644120_2644894_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2644920_2645871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2645969_2646752_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2646840_2648067_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2648792_2650178_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2650196_2650802_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2650798_2652655_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2652651_2653452_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2653466_2654660_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2654727_2655702_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2655824_2657048_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2657158_2659363_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2659657_2660317_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2660324_2660531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2660869_2661625_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2661895_2662411_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2662683_2663001_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2663188_2663425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2663715_2665071_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2665117_2666458_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2666559_2667192_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2667191_2669561_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2669593_2670553_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2670539_2671226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2671222_2671555_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2671670_2672621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2672719_2673670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2771965	2812634	4103217	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2771965_2772916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2773026_2773209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2773308_2773905_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2774088_2775180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2775679_2776090_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2776148_2776478_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2776495_2778913_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2778925_2779948_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2780022_2780382_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2780397_2780595_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2780930_2781881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2782075_2782525_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2782521_2783472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2783582_2785031_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2785145_2785391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2785530_2786481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2786725_2787439_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2787561_2787789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2788083_2788722_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2788830_2789865_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2789861_2790812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2791227_2791752_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2791755_2792025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2792223_2793285_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2793368_2795003_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2795004_2795808_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2795836_2796796_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2796799_2798314_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2798350_2799355_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2799786_2800257_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2800292_2800904_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2800934_2801558_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2801638_2803171_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2803205_2804423_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2804490_2805522_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2805518_2806688_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2806681_2807362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2807523_2808366_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2808528_2809500_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2809671_2810550_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2810572_2811643_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2811683_2812634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2868099	2940969	4103217	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2868099_2868516_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2868626_2869259_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2869287_2869731_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2869752_2870844_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2870898_2871699_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2871834_2872455_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2872594_2873068_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2874207_2875158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2875154_2882816_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2883056_2887103_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2887415_2887997_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2887993_2889292_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2889371_2890400_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2890660_2891611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2891607_2892558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2892874_2893480_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2893533_2894847_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2894921_2895392_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2895391_2896180_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2896190_2897843_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2897930_2898881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2900042_2900549_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2900545_2901310_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2901325_2901610_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2901674_2902664_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2902835_2903765_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2903736_2904423_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2904456_2905002_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2905046_2906312_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2906308_2907211_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2908392_2909337_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2909431_2910949_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2910990_2912619_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2912726_2913608_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2916720_2917095_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2917119_2917458_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2917501_2919136_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2919174_2920521_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2920628_2922050_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2922119_2922704_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2922806_2923757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2923891_2924998_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2925008_2926106_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2926250_2927456_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2927462_2927984_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2927980_2928463_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2928468_2928720_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2928700_2929186_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2929321_2932783_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2932800_2933685_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2933694_2934126_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2934372_2934876_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2934953_2936354_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2936428_2937304_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2937300_2938308_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2938775_2939081_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2939171_2939762_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2939952_2940969_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	2944112	3010923	4103217	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2944112_2945063_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2945161_2946112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2946108_2946903_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2946934_2947639_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2947713_2948514_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2948510_2948918_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2948914_2949556_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2949548_2951549_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2952809_2954141_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2954137_2955088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2956794_2957061_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2957768_2958107_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2962660_2963263_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2963359_2964649_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2964706_2965438_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2965434_2966238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2966234_2967323_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2967319_2968249_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2968397_2969543_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2969564_2970515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2970532_2970691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2970845_2974667_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2974823_2975492_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2975496_2977170_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2977188_2978508_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2978512_2980828_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2980883_2983052_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2983048_2988229_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2988327_2988642_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2988869_2989115_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2989209_2989728_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2989827_2991033_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2991148_2992546_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2992662_2993241_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2993313_2994705_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2994872_2995823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2996103_2996724_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2996720_2997134_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2997130_2998174_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2998229_2998418_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2998427_2999192_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2999282_2999939_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3000030_3000789_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3000814_3002416_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3002616_3003621_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3003721_3003985_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3004102_3004879_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3005469_3006420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3008803_3009916_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3009972_3010923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	3041309	3135346	4103217	transposase	Bacillus_virus(30.0%)	90	NA	NA
WP_005012067.1|3041309_3042260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|3042277_3042427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3042380_3043277_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3045554_3047780_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3047944_3049033_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3048989_3049643_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3049690_3050488_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3051019_3051970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3052050_3053199_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3053255_3054206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3054304_3054610_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3054638_3055073_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3055074_3056319_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3056315_3057026_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3057040_3057952_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|3058139_3058304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3058321_3059272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3059363_3059768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3059764_3060223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3060229_3061138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3061134_3062001_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3061987_3062815_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3062825_3063953_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_077069107.1|3065030_3066269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3066310_3067573_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3067579_3068332_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3068383_3068569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3068844_3069309_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3069340_3070000_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3070144_3072253_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3072249_3073200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3073303_3073924_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3074027_3074768_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3075902_3077027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3077072_3077441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3077682_3078633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3079668_3080211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3080408_3080579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3080596_3081547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3081543_3082452_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3082578_3083415_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3083927_3085037_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3085098_3086049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3086241_3087024_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3087037_3087802_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3087814_3089161_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3089186_3090116_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3090231_3091137_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3091154_3092354_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3092426_3093119_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3093167_3095594_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3095638_3096589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3096606_3096753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3096805_3097174_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3097460_3098387_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3098430_3099441_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3099437_3099872_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3100997_3101786_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3101795_3102578_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3102581_3103673_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3103778_3105254_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3105395_3105944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3105959_3106421_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3106521_3107511_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999542.1|3107809_3108511_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3108549_3109923_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3109961_3111248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3112134_3113037_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3112984_3114205_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3114201_3114711_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3114700_3115396_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3115466_3116336_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3116685_3117636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3118496_3119186_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3119962_3120925_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3120928_3121789_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3121782_3122175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486094.1|3124829_3125627_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3125660_3126440_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3126468_3127341_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3127362_3128112_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3128119_3128977_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3129017_3129581_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3129611_3129908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3129988_3130792_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3130812_3132009_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3132011_3133013_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3133365_3133536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3133630_3134293_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3134395_3135346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	3465995	3519736	4103217	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3465995_3466946_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3467350_3467995_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3468019_3468604_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3468704_3469322_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3469324_3471040_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3471036_3471345_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3471361_3471979_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3472023_3472326_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3472426_3473281_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3473468_3473693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3473862_3474135_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3474552_3474960_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3475329_3476124_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3476224_3477460_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3477528_3478545_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3478556_3479933_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3479929_3481126_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3481122_3482661_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3482657_3483917_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3485857_3486808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3487574_3488669_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3488661_3489996_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3489949_3490633_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3490658_3491822_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3491818_3492820_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3492819_3493692_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3493688_3494438_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3494434_3495226_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3495222_3496362_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3496637_3497423_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3497456_3498239_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3498242_3498632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3499771_3500635_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3500670_3501759_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3501755_3502706_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3503059_3506038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3506964_3507843_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3509791_3510742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3510738_3511206_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3511248_3512019_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3512039_3512840_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3512850_3514260_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3514354_3515140_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3515379_3516396_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3516503_3516896_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3517033_3517714_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3517718_3518690_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3518785_3519736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	3525891	3585191	4103217	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3525891_3527655_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3527766_3528645_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3528757_3529573_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3529576_3529828_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3529912_3530929_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3531259_3531481_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3533841_3534759_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3535256_3536465_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3536544_3538116_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3538233_3539169_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3539357_3540302_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3540869_3546587_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3546592_3547720_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3547775_3548402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3548673_3549690_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3549785_3550496_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3550492_3551482_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3551577_3553209_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3553211_3553949_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3554104_3554977_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3555326_3556466_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3556462_3557122_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3557193_3557826_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3557855_3558374_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3558384_3559494_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3559540_3560395_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3560396_3561299_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3562521_3563472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3565228_3566218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3566393_3567182_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3567178_3568210_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3568228_3568792_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3568847_3570368_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3570631_3571336_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3571343_3572072_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3572186_3572561_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3572603_3573893_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3573889_3575059_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3575055_3575895_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3575954_3576890_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3576902_3577853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3577951_3578914_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3578945_3579305_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3579429_3580332_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3580333_3582106_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3582140_3582917_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_077069109.1|3584240_3585191_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011726	Bordetella pertussis strain I270 chromosome, complete genome	4103217	4002285	4067197	4103217	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4002285_4002771_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002859_4002997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4002989_4003970_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004236_4005046_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005085_4005766_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005759_4006218_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006229_4006592_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006674_4007358_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007413_4007722_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007740_4008055_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008051_4010526_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010533_4011925_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011921_4012107_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012085_4012787_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012783_4013605_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013585_4014710_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014702_4015722_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015927_4016818_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017062_4017854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017936_4018311_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018288_4019698_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019690_4021073_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021407_4023012_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023089_4024061_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024071_4024998_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025388_4026339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026508_4027735_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027934_4028801_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028793_4029756_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029856_4030807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030905_4031856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031954_4032905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032901_4034395_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034391_4037499_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037495_4040564_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040560_4041811_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4041991_4042744_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042785_4043430_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043438_4044419_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044518_4045262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045344_4045692_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045789_4046632_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046676_4047564_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047590_4047779_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047876_4049334_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049320_4050847_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050865_4051333_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051332_4052355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052475_4053216_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053270_4054371_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054372_4055563_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055682_4056699_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057017_4057689_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057685_4058594_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058805_4059453_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063313_4064381_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064391_4065201_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065290_4066064_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4066064_4066229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4066246_4067197_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
