The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	0	59497	4108498	tRNA,transposase	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	70134	123122	4108498	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	165943	226454	4108498	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190580_191054_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194124_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212205_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	234386	287974	4108498	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_010929591.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279587_279728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281475_282330_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	391907	449416	4108498	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929591.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418575_418848_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	591470	652660	4108498	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592917_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	657984	704175	4108498	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	710341	764271	4108498	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	815864	864886	4108498	holin,transposase	Acinetobacter_phage(25.0%)	43	NA	NA
WP_010931070.1|815864_816815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|816913_817864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|817962_818619_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|818766_821475_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|821484_822504_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|822500_823451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|823549_824038_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|824034_824718_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|824747_828203_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|828238_829099_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|829227_830145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|830282_831263_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|831322_833113_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|833109_833886_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|833895_834414_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|834526_836797_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|837008_839240_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|839540_839870_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|839886_841371_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|841381_842884_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|842880_844893_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|844910_845219_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|845215_845863_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|845880_846369_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|846390_847464_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|847463_849791_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|849806_851174_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|851170_851665_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|851710_852967_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|852969_853593_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|853667_854144_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|854180_854540_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|854728_855886_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|856198_857149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|857166_857721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857722_858157_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858153_858588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858571_859375_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859391_860207_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|860203_861019_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861165_861867_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861894_863853_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863935_864886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	887909	941427	4108498	holin,transposase	Acidithiobacillus_phage(33.33%)	44	NA	NA
WP_023994644.1|887909_888926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889122_890106_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891704_893093_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893123_894113_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894223_895456_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895737_896538_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896560_898792_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|899579_900026_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900047_900794_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900937_901915_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902548_903160_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903153_904371_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904511_905462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905458_906178_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906298_908458_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908548_908818_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|909111_909639_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909657_910437_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910604_911621_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911693_912185_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912195_913911_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915074_916025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916021_917854_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918252_918912_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919005_919152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919260_919428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919439_920120_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920401_921118_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921132_922434_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|924578_927467_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927690_929043_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929071_929593_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929589_931044_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931078_931327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931432_932308_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932333_933389_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933401_934193_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934225_935596_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936772_937723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937775_937997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938156_938369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938488_939607_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940112_940364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940476_941427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	954934	1027428	4108498	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012067.1|954934_955885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955881_956856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956980_957892_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958168_958561_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958690_959641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959670_959853_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960625_961807_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962022_962700_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|962696_963422_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|963547_964129_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964499_967181_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|967180_968314_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|968306_969392_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969478_970378_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970374_971703_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971717_972389_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|972576_974292_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974293_974653_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974844_975159_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975201_976422_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976418_977360_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977356_978346_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978380_978965_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979063_980014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980094_981006_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981066_982212_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982231_983146_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983217_983967_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983966_984896_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985139_986966_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987048_987690_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|987912_988914_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990750_991815_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992612_993521_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995008_996283_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996436_996817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996824_997697_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998002_998383_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998593_999319_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999414_1000365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000469_1001519_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001656_1002673_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004181_1004754_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004813_1005545_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005596_1006514_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007321_1010501_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010497_1011880_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011949_1012201_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012346_1012961_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013147_1015262_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015337_1016189_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016185_1016812_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016808_1018563_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018855_1021561_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021573_1023235_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023247_1025038_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025259_1026435_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1026477_1027428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1039035	1087974	4108498	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
WP_023853531.1|1039035_1040169_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040261_1040414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040445_1040994_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041012_1041498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041675_1042614_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042616_1042934_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042979_1043924_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045604_1046255_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046308_1046644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046640_1047501_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047517_1047799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047872_1048136_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048379_1049330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049628_1050366_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050801_1051125_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051159_1051720_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051840_1052716_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052728_1053676_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053777_1054071_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054097_1056155_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056169_1056670_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056743_1058450_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059313_1060366_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060418_1060808_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060816_1061449_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061548_1062565_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063353_1064403_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064399_1066043_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066039_1066927_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067067_1067541_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067530_1068553_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068549_1069977_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070914_1071931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072263_1073199_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073248_1075129_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075195_1075540_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075684_1076821_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076817_1077891_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078048_1079485_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079575_1080217_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080552_1081569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084716_1086138_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086401_1087118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087202_1087520_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087560_1087974_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 13
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1097042	1178319	4108498	tRNA,protease,transposase	Planktothrix_phage(16.67%)	59	NA	NA
WP_005013747.1|1097042_1097993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098360_1099137_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099181_1100039_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100060_1101077_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101211_1102252_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102446_1104528_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104763_1106257_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106487_1107282_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107502_1108861_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108857_1109700_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109718_1111605_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111546_1111798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111842_1112475_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112493_1113096_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113247_1114198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114778_1115486_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115844_1116831_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116970_1117984_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117980_1118931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119043_1119502_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119538_1120852_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120869_1121241_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121237_1122701_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122841_1123570_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123551_1126401_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126613_1127564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127731_1128556_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128555_1129434_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130338_1131454_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131482_1132277_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132273_1134139_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134217_1134850_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134846_1135149_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135191_1136712_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136718_1137474_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137503_1138608_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138710_1140411_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140392_1141370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141379_1142660_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142652_1143348_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143381_1144209_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144490_1147721_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148456_1152383_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1155215_1156079_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1156078_1157047_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157116_1157962_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158029_1158584_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158630_1159581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1159679_1160303_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1160476_1162759_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162913_1165610_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165735_1166224_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168634_1171505_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171550_1172765_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172994_1174422_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174519_1175611_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175623_1176382_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176469_1177372_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177368_1178319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1319002	1384431	4108498	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1319002_1319953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320721_1321360_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322249_1322696_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322777_1323479_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323479_1324247_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324243_1325482_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325481_1326408_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326510_1327626_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327641_1328592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328945_1329527_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329523_1330357_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330567_1331881_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332057_1332939_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332958_1333810_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333862_1334951_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335061_1336189_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336423_1337035_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337133_1338084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338305_1338683_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338830_1339328_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339324_1339852_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339985_1340801_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340813_1341995_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342042_1342936_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343062_1343533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343658_1344486_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344514_1345291_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345287_1345563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345577_1346042_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346053_1346755_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346864_1347365_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347447_1348626_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350253_1350589_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350776_1352225_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352282_1352627_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352733_1353273_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353365_1354316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354414_1355365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355463_1355871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356103_1356535_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1356716_1357121_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358357_1358681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358683_1359571_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359603_1360029_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360100_1360454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360693_1361200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361238_1362570_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362629_1363445_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363441_1364296_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367358_1369902_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371268_1373023_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373019_1375140_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375144_1377340_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377336_1380678_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383480_1384431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1449029	1504517	4108498	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449029_1449980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451181_1451628_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451620_1453096_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453092_1453848_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453840_1454851_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454840_1456517_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456829_1457162_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457175_1457571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457580_1457907_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1457903_1458230_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458156_1459179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459175_1459526_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459573_1460002_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460009_1461383_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461523_1461901_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462163_1463471_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463531_1464362_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464358_1464847_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464888_1466409_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466452_1466929_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467732_1470330_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470359_1471181_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471907_1472657_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472840_1473719_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473816_1474533_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474547_1475108_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475274_1476039_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476058_1476916_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476912_1478112_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478151_1479486_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479538_1481875_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482000_1482564_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482572_1483664_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483735_1484191_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484191_1484986_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484982_1486164_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486150_1486756_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486752_1487526_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487537_1488365_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488526_1490890_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490957_1491677_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491800_1492226_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1492260_1493211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493328_1494255_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494320_1495478_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495458_1495926_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496073_1497024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497040_1497475_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497464_1497815_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498011_1499166_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1499162_1500335_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500382_1501276_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501321_1501759_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501818_1502508_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1502517_1503468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503566_1504517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1599214	1667300	4108498	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1599214_1599703_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599820_1600399_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600504_1600873_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600971_1601922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601928_1603041_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603727_1604930_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1604965_1605112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1605133_1607794_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1607806_1611211_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611878_1614104_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614150_1614477_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614527_1615136_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615234_1616185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616254_1617019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617015_1617615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617718_1618570_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618629_1619256_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619252_1620203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620301_1621414_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621403_1622405_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622510_1624022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624018_1625323_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625434_1625995_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626262_1626817_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627272_1627488_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627742_1630340_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630336_1631524_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632182_1632797_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632885_1634013_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634024_1634930_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635822_1636773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636954_1637707_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637775_1638435_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638431_1639160_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639172_1641452_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641476_1641680_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641721_1642354_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642489_1643407_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643403_1644117_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644354_1645125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645129_1645729_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645973_1647464_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647522_1647807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647944_1648100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648372_1649299_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649435_1650176_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650342_1651719_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651900_1652806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654457_1656260_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656386_1657028_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657126_1658077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658098_1659319_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659504_1660917_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660980_1662048_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662047_1663535_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663544_1664489_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664648_1665347_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665424_1666330_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666349_1667300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1703249	1758840	4108498	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_010931070.1|1703249_1704200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704258_1705032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705024_1706581_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706577_1707528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708854_1709457_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709696_1710398_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710391_1711174_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711358_1712309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712407_1713145_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713334_1714093_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714139_1715129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715306_1716275_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717814_1718783_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718791_1719733_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720206_1721217_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721207_1722722_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722718_1724065_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724067_1725102_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725151_1726777_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727329_1728280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728384_1729332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729385_1731200_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731192_1731867_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731996_1735071_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735084_1735384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735698_1736322_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736565_1737435_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737412_1738357_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738442_1739369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739481_1740261_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740251_1741448_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741478_1742429_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742650_1743340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743404_1744160_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744211_1745204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745213_1746167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746282_1747245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748646_1749075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749071_1750022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750315_1751053_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751476_1752664_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1752667_1753048_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754767_1755739_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755752_1756466_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756470_1757388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757494_1757791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757889_1758840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	1991605	2061257	4108498	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991605_1994263_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994340_1995543_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995539_1996052_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996174_1996612_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996888_1997839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997937_1998888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1999141_2000947_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2001060_2001228_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001291_2001528_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2001896_2003096_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004611_2005562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006013_2007015_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007187_2008045_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008041_2009304_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009404_2009779_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2009851_2011039_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011123_2011894_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012007_2012772_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012722_2014024_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2014020_2014827_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2016571_2017543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017699_2018212_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018370_2019345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020345_2021140_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021165_2021972_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022082_2022673_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022683_2023862_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023964_2024339_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024591_2025923_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025989_2029220_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030710_2031457_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031541_2032003_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032040_2033099_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033061_2034891_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034930_2035503_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036927_2037749_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038067_2039390_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039749_2040385_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040344_2041295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042165_2043038_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043115_2044255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044613_2045870_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045875_2046403_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046407_2047226_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047225_2047948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047969_2048284_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048301_2049450_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049480_2050356_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050352_2051672_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051744_2052941_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052951_2054439_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057033_2057933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058070_2059036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059134_2060085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060306_2061257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2072753	2122149	4108498	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072753_2073704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074841_2075138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075312_2076665_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076807_2077824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079803_2080817_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2080903_2081809_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081965_2082310_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082467_2082926_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082939_2085156_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085152_2086214_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086242_2087217_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087168_2087987_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087999_2088608_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2088782_2089178_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089196_2090636_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090664_2091012_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091030_2091981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092633_2093584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093667_2095485_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095558_2096206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096218_2097148_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097317_2097782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098029_2098710_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098758_2100450_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100465_2101017_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101013_2101385_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101497_2102334_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102344_2102869_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102966_2103146_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103275_2104250_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104380_2104737_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104726_2105602_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105700_2106585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106606_2107902_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108850_2109501_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2109588_2111109_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111366_2113232_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114277_2115228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115245_2115386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116200_2116560_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116547_2117984_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117980_2118634_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118630_2119824_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119927_2121202_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121198_2122149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2133353	2174044	4108498	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133353_2134304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134402_2135353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135312_2135726_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136010_2136310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136719_2139002_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139467_2139662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139687_2141718_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141737_2141950_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142227_2142767_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142880_2144176_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144252_2145410_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145593_2146493_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146511_2147816_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147781_2148888_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148975_2149212_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149350_2150421_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150424_2151780_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2151806_2152967_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152969_2153608_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2153609_2154896_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2154954_2156250_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156256_2156763_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156759_2157908_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157935_2158361_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158683_2161566_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161658_2162414_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163179_2164529_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164627_2165578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165676_2166627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166700_2167174_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167199_2168408_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168404_2169178_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169177_2169801_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169966_2170227_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170530_2171112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171178_2171433_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171419_2174044_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2201827	2267376	4108498	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201827_2202778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202978_2203788_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2203912_2204863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204859_2205753_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205877_2206072_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206071_2206413_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206422_2208285_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208414_2208927_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208929_2209253_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209254_2209665_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209702_2210914_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210931_2211444_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211659_2212151_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212403_2214440_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214517_2215720_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215848_2216499_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218056_2219007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219577_2219790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219807_2220539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220573_2221215_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221207_2221876_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224088_2224865_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224886_2226044_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226040_2226472_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2226468_2227272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227285_2227687_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227753_2228725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228790_2230014_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230241_2231192_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231315_2233769_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233957_2235262_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235366_2236020_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236022_2237333_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2237529_2238090_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238201_2238402_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238747_2239314_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239397_2239601_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239907_2240228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240269_2240551_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240625_2241882_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242264_2242594_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244164_2244986_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244985_2246125_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246131_2247028_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2247024_2248950_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249309_2251922_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251974_2254275_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254271_2255480_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2255741_2256116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256112_2257063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257161_2259156_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259215_2260181_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260170_2263032_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263034_2263541_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263645_2264854_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264855_2265794_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265955_2266429_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266425_2267376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2544175	2608391	4108498	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_004566381.1|2544175_2545663_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545700_2546759_-	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_023853242.1|2546758_2547259_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547271_2547871_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547867_2548368_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548369_2549599_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549788_2550028_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550210_2550963_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550964_2551900_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551981_2552968_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552967_2554026_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554082_2554265_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554316_2554910_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555018_2555618_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555614_2556325_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556326_2557154_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558970_2560212_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560223_2560997_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561023_2561974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562072_2562855_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562943_2564170_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2564895_2566281_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566299_2566905_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566901_2568758_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568754_2569555_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569569_2570763_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570830_2571805_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571927_2573151_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573261_2575466_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575760_2576420_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576427_2576634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576972_2577728_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2577743_2577905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2577998_2578514_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578786_2579104_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2579048_2579693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579818_2581174_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581220_2582561_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582662_2583295_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2583294_2585655_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585696_2586656_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586642_2587329_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2587325_2587658_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587773_2588724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588822_2589773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589769_2591836_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591835_2592108_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592802_2592892_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592891_2594676_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594699_2596865_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596875_2597475_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600296_2600992_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2601000_2601951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2602049_2603291_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2603440_2604421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2604619_2605876_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2606078_2606504_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2606545_2606908_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2606920_2607274_-	cytochrome c	NA	NA	NA	NA	NA
WP_005013747.1|2607440_2608391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2688068	2728738	4108498	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688068_2689019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689129_2689312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689411_2690008_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690191_2691283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691782_2692193_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2692251_2692593_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2692598_2695016_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695028_2696051_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696125_2696485_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696500_2696698_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697033_2697984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698178_2698628_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698624_2699575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699685_2701134_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2701248_2701530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701633_2702584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702828_2703542_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703664_2703892_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704186_2704825_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704933_2705968_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705964_2706915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707330_2707855_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707858_2708128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708326_2709388_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709471_2711106_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711107_2711911_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711939_2712899_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712902_2714417_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2714453_2715716_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2715890_2716361_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716396_2717008_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717038_2717662_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717742_2719275_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2719309_2720551_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720594_2721626_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721622_2722792_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2722785_2723466_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2723627_2724470_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724632_2725604_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725775_2726654_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726676_2727747_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727787_2728738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2784203	2857073	4108498	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784203_2784620_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784730_2785363_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785391_2785835_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785856_2786948_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2787002_2787803_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787938_2788559_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2788698_2789172_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790311_2791262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069122.1|2791258_2798920_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799160_2803207_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803519_2804101_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804097_2805396_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805475_2806504_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806764_2807715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807711_2808662_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808978_2809584_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809637_2810951_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811025_2811496_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811495_2812284_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812294_2813947_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814034_2814985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816146_2816653_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816649_2817414_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817429_2817714_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817778_2818768_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818939_2819869_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819840_2820527_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820560_2821106_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821150_2822416_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822412_2823315_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824496_2825441_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825535_2827053_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827094_2828723_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828830_2829712_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832824_2833199_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833223_2833562_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833605_2835240_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835278_2836625_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836732_2838154_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838223_2838808_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838910_2839861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839995_2841102_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841112_2842210_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842354_2843560_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843566_2844088_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844084_2844576_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844572_2844824_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844804_2845290_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845425_2848887_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848904_2849789_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849798_2850230_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850476_2850980_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851057_2852458_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852532_2853408_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853404_2854412_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854879_2855185_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855275_2855866_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856056_2857073_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2860216	2928076	4108498	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2860216_2861167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861265_2862216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862212_2863007_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863038_2863743_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863817_2864618_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864614_2865022_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865018_2865660_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865652_2867653_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868913_2870245_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870241_2871192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2871290_2872241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873947_2874214_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874921_2875260_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879813_2880416_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880512_2881802_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881859_2882591_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882587_2883391_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883387_2884476_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884472_2885402_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885550_2886696_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886717_2887668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887998_2891820_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891976_2892645_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892649_2894323_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894341_2895661_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895665_2897981_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898036_2900205_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900201_2905391_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905480_2905795_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906022_2906268_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906362_2906881_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906980_2908186_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908301_2909699_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909815_2910394_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910466_2911858_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912025_2912976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913256_2913877_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913873_2914287_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914283_2915327_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915382_2915571_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915580_2916345_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916435_2917092_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917183_2917942_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917967_2919569_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919769_2920774_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920874_2921138_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921255_2922032_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922622_2923573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925956_2927069_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927125_2928076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	2958462	3002153	4108498	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2958462_2959413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959533_2960430_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962707_2964933_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965097_2966186_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966142_2966796_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966843_2967641_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968172_2969123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969197_2970352_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970408_2971359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971457_2971763_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971791_2972226_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972227_2973472_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973468_2974179_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974193_2975105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975467_2975872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975868_2976327_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976333_2977242_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977238_2978105_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978091_2978919_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978929_2980057_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981134_2982373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982414_2983677_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983683_2984436_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984487_2984673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984948_2985413_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985444_2986104_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986248_2988357_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988353_2989304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989407_2990028_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990119_2990872_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992006_2993131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993176_2993545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993786_2994737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995772_2996315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996700_2997651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997647_2998613_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998682_2999519_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000031_3001141_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001202_3002153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	3383147	3436888	4108498	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383147_3384098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384502_3385147_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385171_3385756_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385856_3386474_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386476_3388192_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388188_3388497_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388513_3389131_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389175_3389478_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389578_3390433_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390620_3390845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391014_3391287_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391704_3392112_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392481_3393276_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393376_3394612_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394680_3395697_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395708_3397085_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397081_3398278_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398274_3399813_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399809_3401069_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403009_3403960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404726_3405821_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405813_3407148_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407101_3407785_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407810_3408974_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408970_3409972_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409971_3410844_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410840_3411590_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411586_3412378_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412374_3413514_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413789_3414575_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414608_3415391_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415394_3415784_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416923_3417787_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417822_3418911_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418907_3419858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420211_3423190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424116_3424995_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426943_3427894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427890_3428358_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428400_3429171_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3429191_3429992_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430002_3431412_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431506_3432292_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432531_3433548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433655_3434048_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434185_3434866_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434870_3435842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435937_3436888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	3443043	3502343	4108498	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3443043_3444807_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444918_3445797_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445909_3446725_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446728_3446980_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447064_3448081_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448411_3448633_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450993_3451911_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452408_3453617_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453696_3455268_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455385_3456321_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456509_3457454_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458021_3463739_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463744_3464872_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464927_3465554_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3465825_3466842_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466937_3467648_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467644_3468634_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468729_3470361_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470363_3471101_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471256_3472129_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3472397_3473618_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473614_3474274_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474345_3474978_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475007_3475526_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475536_3476646_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476692_3477547_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477548_3478451_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479673_3480624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482380_3483370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3483366_3483525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3483545_3484334_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484330_3485362_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485380_3485944_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485999_3487520_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487783_3488488_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3488495_3489233_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489338_3489713_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489755_3491045_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491041_3492211_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492207_3493047_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493106_3494042_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494054_3495005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495103_3496066_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496097_3496457_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496581_3497484_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497485_3499258_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499292_3500069_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501392_3502343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	3517281	3575354	4108498	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517281_3518232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518360_3519494_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519537_3520443_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520445_3522146_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522142_3523063_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523070_3524048_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524106_3525141_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3527115_3527352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527478_3528342_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528430_3529252_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529331_3530069_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3530065_3531058_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3531171_3531834_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531878_3533027_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3535350_3536301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536641_3537592_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537690_3538641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538937_3539435_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539477_3541253_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541260_3542127_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542133_3542868_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544037_3544832_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545121_3545712_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545745_3547074_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547148_3548294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548405_3549404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549366_3549801_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551317_3552202_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552198_3553404_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553400_3554261_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3554373_3556164_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3556204_3556870_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3556870_3557179_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557344_3558631_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3560064_3561015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562966_3564181_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564286_3565276_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565272_3565881_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565893_3566523_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566519_3567140_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567171_3567963_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568814_3569270_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3569288_3570215_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570268_3571555_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572485_3573358_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573354_3574305_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574403_3575354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011730	Bordetella pertussis strain I315 chromosome, complete genome	4108498	4030669	4084101	4108498	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_014486111.1|4030669_4031620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031789_4033016_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033215_4034082_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034074_4035037_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035137_4036088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036186_4037137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037235_4038186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038182_4039676_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039672_4042780_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042776_4045845_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045841_4047092_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047272_4048034_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048066_4048717_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4048719_4049559_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049799_4050543_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4050625_4050973_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051070_4051913_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051957_4052845_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052871_4053060_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053157_4054615_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054601_4056128_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056146_4056614_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4056613_4057636_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4057756_4058476_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4058551_4059652_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059653_4060844_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060963_4061980_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062298_4062970_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062966_4063875_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064086_4064734_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4068585_4069662_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069672_4070482_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070571_4071345_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071527_4072478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4072366_4073389_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4073378_4074533_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4074572_4075985_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4076109_4076976_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076977_4077802_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4077798_4078560_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4078640_4079327_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4079500_4080508_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4080504_4081284_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4081341_4082604_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4083150_4084101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
