The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	27282	71085	4104275	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	78683	137157	4104275	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	165942	226453	4104275	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	234385	287973	4104275	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	469550	586396	4104275	transposase,tRNA	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|469550_470501_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471223_472498_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472584_473667_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473677_474490_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474526_474853_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474857_475418_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475658_476651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476669_477665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|477680_479057_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479049_481431_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481447_481837_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481963_482194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482298_483249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483347_484298_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484294_485167_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486097_487384_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487437_488364_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488382_488838_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|489689_490481_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490512_491133_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491129_491759_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491771_492380_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492376_493366_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493471_494686_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496637_497588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499021_500308_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|500473_500782_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|500803_501448_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|501488_503279_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503391_504252_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|504248_505454_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505450_506335_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507851_508286_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508248_509247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509358_510504_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510578_511907_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511940_512531_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512820_513615_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514784_515519_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515525_516392_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516399_518175_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518217_518715_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519011_519962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520060_521011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521351_522302_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524625_525774_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|525818_526442_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526594_527587_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527583_528321_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|528400_529222_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529310_530174_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530300_530537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532511_533546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|533604_534582_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534589_535510_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535506_537207_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537209_538115_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538158_539292_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539420_540371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540469_542539_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542581_544684_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544990_546067_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546142_547027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547209_547632_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547641_549042_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549084_549990_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550088_551630_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551664_552204_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552216_552687_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552824_553067_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553183_554065_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554137_554458_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568428_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584034_585174_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	590810	654643	4104275	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010929632.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010930320.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614724_616065_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617134_618559_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618558_619260_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	673554	750863	4104275	transposase,integrase,tRNA,protease	Bacillus_phage(20.0%)	58	720691:720709	740579:740597
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674603_676079_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677666_678554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678556_679498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679543_681109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682886_684212_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684394_685852_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685815_686313_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686343_687315_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687367_687799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687928_688597_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689325_690429_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690534_691809_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691820_692846_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692847_694218_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694218_695355_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695401_697327_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697323_698445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698441_699596_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699592_700723_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700730_702296_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702302_703685_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703963_704575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704666_706082_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706099_706810_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706806_708129_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708208_710170_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710295_711609_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711717_713016_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713198_714107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714116_714326_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714337_716017_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716118_717072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717162_717990_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717988_719875_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719871_720471_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720519_721419_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721627_722578_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722700_723315_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	996812	1099205	4104275	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996812_997928_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998028_998847_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998944_999556_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999715_1001092_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001154_1001613_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001697_1002393_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002454_1002736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003298_1004051_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004095_1005172_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005168_1006119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006221_1006884_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006978_1007149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007501_1008503_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008505_1009702_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009722_1010526_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010606_1010903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010933_1011497_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011537_1012395_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012402_1013152_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013173_1014046_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014074_1014854_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014887_1015685_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018339_1018732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018725_1019586_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019589_1020552_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021328_1022018_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022878_1023829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024178_1025048_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025118_1025814_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025803_1026313_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026309_1027530_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027477_1028380_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029266_1030553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030591_1031965_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1032003_1032705_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1033003_1033993_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034093_1034555_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034570_1035119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035260_1036736_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036841_1037933_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037936_1038719_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038728_1039517_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040642_1041077_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041073_1042084_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042127_1043054_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043340_1043709_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043925_1044876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044920_1047347_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047395_1048088_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048160_1049360_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049377_1050283_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050398_1051328_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051353_1052700_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052712_1053477_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053490_1054273_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054465_1055416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055477_1056587_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057099_1057936_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058062_1058971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058967_1059918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060303_1060846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061881_1062832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063073_1063442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063487_1064612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065746_1066487_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066590_1067211_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067314_1068265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068261_1070370_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070514_1071174_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071205_1071670_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071945_1072131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072182_1072935_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072941_1074204_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074245_1075484_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076561_1077689_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077699_1078527_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078513_1079380_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080746_1081151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081242_1082193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082562_1083474_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083488_1084199_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084195_1085440_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085441_1085876_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085904_1086210_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086308_1087259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087315_1088464_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088544_1089495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090026_1090824_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090871_1091525_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091481_1092570_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092734_1094960_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097237_1098134_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098254_1099205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1129591	1200561	4104275	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129591_1130542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130598_1131711_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134094_1135045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135635_1136412_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136529_1136793_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136893_1137898_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138098_1139700_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139725_1140484_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140575_1141232_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141322_1142087_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142096_1142285_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142340_1143384_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143380_1143794_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143790_1144411_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144691_1145642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145809_1147201_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147273_1147852_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147968_1149366_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149481_1150687_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150786_1151305_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151399_1151645_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151872_1152187_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152285_1157466_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157462_1159631_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159686_1162002_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1162006_1163326_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163344_1165018_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165022_1165691_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165847_1169669_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169999_1170950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170971_1172117_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172265_1173195_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173191_1174280_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174276_1175080_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175076_1175808_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175865_1177155_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177251_1177854_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182406_1182745_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183452_1183719_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185425_1186376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186372_1187704_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188964_1190965_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190957_1191599_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191595_1192003_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191999_1192800_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192874_1193579_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193610_1194405_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194401_1195352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1195450_1196401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196499_1196934_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197016_1199353_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010929632.1|1199544_1200561_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1247955	1328830	4104275	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247955_1248906_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248902_1249853_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250113_1251142_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251221_1252520_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252516_1253098_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253410_1257457_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257697_1265359_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010929591.1|1265355_1266306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267445_1267919_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268058_1268679_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268814_1269615_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269669_1270761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270782_1271226_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271254_1271887_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271997_1272414_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272406_1273099_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273205_1273580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273656_1274466_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274561_1275506_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275544_1276516_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276606_1277044_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277102_1277984_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278987_1279848_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279880_1281263_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281259_1282279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282651_1283146_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283153_1283894_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283974_1285579_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285618_1286407_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286532_1288698_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289578_1290391_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290403_1290712_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290829_1292560_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292561_1293764_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293836_1294505_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294626_1295094_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295229_1296612_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296608_1297733_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297729_1300366_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300781_1301732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305478_1306090_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306312_1307773_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307869_1309462_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309815_1310073_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310074_1311415_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311510_1312200_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312212_1313643_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315367_1316189_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316199_1317771_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317799_1318777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318803_1319607_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319603_1320398_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320405_1321641_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321654_1322068_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322817_1323768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324389_1326117_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326228_1327587_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327879_1328830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1448225	1500383	4104275	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1448225_1449176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449342_1449696_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449708_1450071_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450112_1450538_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450740_1451997_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452195_1453176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453325_1454567_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454665_1455616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455624_1456320_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459141_1459741_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459751_1461917_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461940_1463725_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463724_1463814_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464508_1464781_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464780_1466847_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466843_1467794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467892_1468843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468958_1469291_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469287_1469974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469960_1470920_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470952_1473322_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473321_1473954_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474055_1475396_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475442_1476798_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477088_1477325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477512_1477830_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478102_1478618_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478888_1479644_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479982_1480189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480196_1480856_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481150_1483355_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483465_1484689_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484811_1485786_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485853_1487047_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487061_1487862_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487858_1489715_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489711_1490317_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490335_1491721_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492446_1493673_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493761_1494544_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494642_1495593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495619_1496393_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496404_1497646_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499432_1500383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1545357	1613443	4104275	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1545357_1545846_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545963_1546542_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546647_1547016_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547114_1548065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548071_1549184_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549870_1551073_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551276_1553937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553949_1557354_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558021_1560247_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560293_1560620_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560670_1561279_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561377_1562328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562397_1563162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1563158_1563695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563861_1564713_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564772_1565399_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565395_1566346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566444_1567557_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567546_1568548_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568653_1570165_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570161_1571466_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571577_1572138_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572405_1572960_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573415_1573631_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573885_1576483_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576479_1577667_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578325_1578940_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1579028_1580150_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580167_1581073_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581965_1582916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583097_1583850_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583918_1584578_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584574_1585303_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585315_1587595_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587619_1587823_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587864_1588497_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588632_1589550_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589546_1590260_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590497_1591268_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591272_1591872_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592116_1593607_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593665_1593950_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1594515_1595442_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595578_1596319_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596485_1597862_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598043_1598949_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600600_1602403_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602520_1603171_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603269_1604220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604241_1605462_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605647_1607060_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607123_1608191_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608190_1609678_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609687_1610632_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610791_1611490_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611567_1612473_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612492_1613443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1649392	1704983	4104275	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649392_1650343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650401_1651175_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651167_1652724_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652720_1653671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654997_1655600_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655839_1656541_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656534_1657317_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657501_1658452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658550_1659288_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659477_1660236_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660282_1661272_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661449_1662418_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663957_1664926_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664934_1665876_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666349_1667360_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667350_1668865_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668861_1670208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670210_1671245_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671294_1672920_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673472_1674423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674527_1675475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675528_1677343_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677335_1678010_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678139_1681214_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681227_1681527_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681841_1682465_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682708_1683578_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683555_1684500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684585_1685512_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685624_1686404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686394_1687591_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687621_1688572_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688793_1689483_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689547_1690303_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690354_1691347_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691356_1692310_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692425_1693388_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694789_1695218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695214_1696165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696458_1697181_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697619_1698807_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698810_1699161_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700910_1701882_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701895_1702609_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702613_1703531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703637_1703934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704032_1704983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	1937747	2007399	4104275	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937747_1940405_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940482_1941685_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941681_1942194_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942316_1942754_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943030_1943981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944079_1945030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945193_1947089_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947202_1947370_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947433_1947670_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1948038_1949190_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950753_1951704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952155_1953157_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953329_1954187_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954183_1955446_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955546_1955921_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1955993_1957181_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957265_1958036_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958149_1958914_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958864_1960166_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960162_1960969_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962713_1963685_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963841_1964354_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964512_1965487_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966487_1967282_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967307_1968114_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968224_1968815_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968825_1970004_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970106_1970481_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970733_1972065_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972131_1975362_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976852_1977599_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977683_1978145_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978182_1979241_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979203_1981033_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981072_1981645_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983069_1983891_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984209_1985532_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985891_1986527_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986486_1987437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988307_1989180_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989257_1990397_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990755_1992012_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1992017_1992545_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992549_1993368_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993367_1994090_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994111_1994426_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994443_1995592_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995622_1996498_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996494_1997814_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997886_1999083_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999093_2000581_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003175_2004075_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004212_2005178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005276_2006227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006448_2007399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2018895	2066203	4104275	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018895_2019846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019944_2020241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020415_2021768_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021910_2022927_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024906_2025920_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2026006_2026912_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027068_2027413_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027570_2028029_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028042_2030259_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030255_2031317_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031345_2032320_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032271_2033090_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033102_2033711_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2033885_2034281_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034299_2035739_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035767_2036115_+	GFA family protein	NA	NA	NA	NA	NA
WP_010930363.1|2036133_2037084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037736_2038687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038770_2040588_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040661_2041309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041321_2042251_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042420_2042885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043132_2043813_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043861_2045553_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045568_2046120_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046116_2046488_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046600_2047437_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047447_2047972_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048069_2048249_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048378_2049353_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049483_2049840_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049829_2050705_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050803_2051688_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051709_2053005_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053953_2054604_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054691_2056212_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056469_2058335_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058331_2059282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059299_2059440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060254_2060614_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060601_2062038_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062034_2062688_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062684_2063878_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063981_2065256_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065252_2066203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2077407	2118098	4104275	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2077407_2078358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078456_2079407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079366_2079780_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080064_2080364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080773_2083056_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2083521_2083716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2083741_2085772_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085791_2086004_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086281_2086821_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086934_2088230_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088306_2089464_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089647_2090547_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090565_2091870_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091835_2092942_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2093029_2093266_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093404_2094475_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094478_2095834_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2095860_2097018_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2097023_2097662_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2097663_2098959_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2099008_2100295_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100310_2100817_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100813_2101962_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101989_2102415_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102737_2105620_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105712_2106468_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107233_2108583_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108681_2109632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109730_2110681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110754_2111228_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111253_2112462_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112458_2113232_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113231_2113855_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2114020_2114281_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114584_2115166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115232_2115487_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115473_2118098_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2145881	2211430	4104275	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145881_2146832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147032_2147842_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2147966_2148917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148913_2149807_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149931_2150126_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150125_2150467_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150476_2152339_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152468_2152981_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152983_2153307_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153308_2153719_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153756_2154968_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154985_2155498_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155713_2156205_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156457_2158494_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158571_2159774_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159902_2160553_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2162110_2163061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163631_2163844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163861_2164593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164627_2165269_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165261_2165930_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168142_2168919_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168940_2170098_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170094_2170526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2170522_2171320_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171339_2171741_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171807_2172779_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172844_2174068_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174295_2175246_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175369_2177823_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2178011_2179316_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179420_2180074_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180076_2181387_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2181565_2182144_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182255_2182456_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182801_2183368_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183451_2183655_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183961_2184282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184323_2184605_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184679_2185936_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186318_2186648_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188218_2189040_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189039_2190179_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190185_2191082_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2191096_2193004_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193363_2195976_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2196028_2198329_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198325_2199534_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2199795_2200170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200166_2201117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201215_2203210_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203269_2204235_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204224_2207086_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207088_2207595_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207699_2208908_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208909_2209848_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2210009_2210483_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210479_2211430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2505071	2563315	4104275	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2505071_2506022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506501_2507158_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507172_2508840_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508842_2509472_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509683_2510778_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510922_2511735_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2511738_2513322_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2513492_2514623_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514809_2515886_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515967_2516618_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516632_2518036_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518319_2519138_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519134_2519839_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520738_2521854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521887_2522262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522284_2523442_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523454_2523688_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524322_2527292_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527306_2527516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527667_2528297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528293_2530351_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530407_2531088_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531084_2531645_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531651_2532749_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532901_2533495_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533491_2534784_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534797_2535340_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535349_2536186_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536219_2537281_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537322_2538375_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538390_2538693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538834_2539785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2539963_2541658_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541654_2542740_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542787_2543687_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543697_2544342_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545363_2548606_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548616_2549771_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549997_2550960_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_077074155.1|2551058_2552009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2552107_2553058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2553067_2553757_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2553816_2554254_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554299_2555193_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555240_2556413_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556409_2557564_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2557760_2558111_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2558100_2558535_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2558551_2559502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559649_2560117_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2560097_2561255_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561320_2562247_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562364_2563315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2605595	2672095	4104275	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605595_2606546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606915_2607488_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607490_2608501_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608493_2608994_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2609004_2609346_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609414_2610149_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610165_2610435_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610457_2611246_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611292_2612309_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612525_2613968_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614146_2615766_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615886_2617707_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617785_2619318_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619351_2620998_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621067_2622090_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622107_2623241_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623243_2623933_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623932_2624718_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624761_2625526_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625564_2626986_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627051_2627756_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627803_2628223_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628235_2628643_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628826_2629537_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629663_2629954_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629971_2630454_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634959_2636114_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636419_2637436_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637682_2638471_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638537_2639218_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639214_2639985_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640083_2641034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641089_2642007_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2642017_2643196_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643215_2644211_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645799_2646408_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646395_2647436_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647453_2648416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648412_2649606_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649602_2650400_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650425_2651412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651430_2653470_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653671_2654352_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654365_2655277_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655273_2655852_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655990_2656896_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656903_2660323_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660310_2662911_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663866_2664499_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664892_2665651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665647_2666850_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667037_2667988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668895_2670041_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670027_2670783_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670899_2671079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671144_2672095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2834660	2900243	4104275	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834660_2835611_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835709_2836660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2836862_2837852_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837935_2838289_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838366_2838975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840648_2841227_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841251_2842205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842244_2843162_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843283_2844210_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844217_2844964_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845290_2846232_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846458_2848156_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848590_2850012_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850165_2850945_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2851069_2851948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2852053_2853178_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2853223_2854186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2854178_2855033_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855140_2855551_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855547_2856498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856596_2857478_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857555_2858935_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858973_2859819_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859834_2860149_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860181_2860718_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860890_2861466_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861568_2862306_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862373_2864011_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864118_2864874_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864861_2865824_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865931_2866726_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866787_2868863_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2869027_2871403_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871483_2872839_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874317_2875040_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875094_2876078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876207_2877158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877154_2878057_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878144_2878903_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878915_2880007_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880104_2881532_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881761_2882976_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883021_2885892_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888302_2888791_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888916_2891613_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891767_2894050_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894213_2894846_+	fimbrial protein	NA	NA	NA	NA	NA
WP_005012067.1|2894944_2895895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895941_2896496_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896563_2897409_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897478_2898447_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898446_2900243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2917813	2979889	4104275	transposase,holin,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2917813_2919334_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919376_2919679_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919675_2920308_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920386_2922252_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922248_2923043_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923071_2924187_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925091_2925970_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925969_2926794_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926961_2927912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928124_2930974_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930955_2931684_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931824_2933288_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933284_2933656_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933673_2934987_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935023_2935482_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935594_2936545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936541_2937555_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937694_2938681_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939039_2939747_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940327_2941278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941429_2942032_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942050_2942683_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942727_2942979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942920_2944807_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944825_2945668_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945664_2947023_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947243_2948038_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948268_2949762_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949997_2952079_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952273_2953314_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953448_2954465_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954486_2955344_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955388_2956165_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2956532_2957483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957509_2957974_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959180_2961469_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961585_2962458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962500_2963655_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963689_2964520_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964603_2966148_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966190_2966550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966551_2966965_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_077107796.1|2967005_2967323_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967407_2968124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968387_2969809_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_023852617.1|2971011_2971962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2974004_2975021_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975356_2975998_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976088_2977525_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977682_2978756_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978752_2979889_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 23
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	2983642	3056159	4104275	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2983642_2984659_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985596_2987024_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987020_2988043_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988032_2988506_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988646_2989534_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989530_2991174_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991170_2992178_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993008_2994025_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994124_2994757_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994765_2995155_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995207_2996260_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997123_2998830_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998903_2999404_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999418_3001476_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001502_3001796_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001897_3002845_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002857_3003733_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003853_3004414_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004448_3004772_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005207_3005945_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006243_3007194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007437_3007701_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007774_3008056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008072_3008933_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008929_3009265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009318_3009969_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011649_3012594_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012639_3012957_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012959_3013898_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014075_3014561_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014579_3015128_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015159_3015312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3016641_3017283_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017437_3019786_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019782_3020721_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020746_3021937_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021933_3022707_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022736_3023930_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024047_3025058_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025075_3027112_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027306_3028047_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028145_3029096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029138_3030314_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030535_3032326_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032338_3034000_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034012_3036718_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037010_3038765_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038761_3039388_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039384_3040236_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040365_3042426_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042612_3043227_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043372_3043624_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043693_3045076_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045072_3048252_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049059_3049977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050028_3050760_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050819_3051392_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052900_3053917_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054054_3055104_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055208_3056159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	3075559	3140499	4104275	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3075559_3076510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076608_3077193_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077227_3078217_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078213_3079155_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079151_3080372_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080414_3080729_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080920_3081280_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081281_3082997_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083184_3083856_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083870_3085199_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085195_3086095_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086181_3087267_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087259_3088390_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088392_3091074_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091444_3092026_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092151_3092877_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092873_3093551_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093766_3094948_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095720_3095903_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095932_3096883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097012_3097405_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097681_3098593_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098717_3099692_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099688_3100639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100737_3101823_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101920_3102331_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102946_3104860_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104995_3107608_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107609_3108344_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108507_3109689_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109685_3109898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109894_3110875_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110920_3111748_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111897_3113712_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113766_3114150_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114146_3115097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115209_3115461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115654_3115870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115966_3117085_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117204_3117417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117576_3117798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117850_3118801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119977_3121348_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121380_3122172_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122184_3123240_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123265_3124141_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124246_3124495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124529_3125984_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125980_3126502_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126530_3127883_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128106_3130995_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133139_3134441_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134455_3135172_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135453_3136134_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3136661_3137321_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137719_3139552_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139548_3140499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	3232122	3301125	4104275	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232122_3233073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233069_3234089_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234098_3236807_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236954_3237611_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237709_3238660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238807_3239701_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239900_3241595_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241629_3242556_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242624_3243722_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243740_3244604_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244615_3245398_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245394_3246513_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246509_3248042_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248082_3249090_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249234_3249957_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249972_3250995_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251311_3252046_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252130_3253876_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253872_3254625_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254669_3255626_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255714_3256281_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256288_3257149_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257178_3257907_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257938_3258622_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259459_3260374_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260438_3261347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261437_3262862_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262863_3264186_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264182_3266321_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266398_3271519_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271619_3271928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271997_3272555_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272570_3274052_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274106_3275960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276222_3277560_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277594_3279592_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279609_3281658_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281788_3282655_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282923_3283889_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284003_3285152_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285576_3285888_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285921_3286182_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286331_3287465_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287535_3288672_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288837_3289632_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289694_3290138_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290253_3291204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291326_3291734_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291806_3294002_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294223_3295174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295133_3295658_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295789_3296761_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296880_3299325_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299340_3299931_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300174_3301125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	3316571	3416684	4104275	tRNA,transposase,terminase,tail,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316571_3317522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318253_3318631_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318615_3319317_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319460_3320153_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320152_3321256_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321365_3323738_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323734_3325294_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325318_3326116_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326147_3327293_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327397_3328840_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328842_3330072_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332209_3333160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334289_3334847_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334822_3335173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335341_3336136_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336132_3337182_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337181_3337871_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337957_3338455_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338486_3339803_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339819_3340794_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340830_3341289_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341288_3341969_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341971_3342400_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342452_3344183_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344248_3344821_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344801_3345488_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345843_3346515_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346843_3347065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347064_3347346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347342_3347858_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347857_3348409_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348387_3348630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348634_3349447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349446_3349710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349750_3349948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349928_3350345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350349_3354306_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354298_3354688_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354684_3355218_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355285_3355645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355654_3358267_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358292_3358583_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358600_3358930_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358939_3359458_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359712_3360213_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360220_3360643_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360639_3361038_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361034_3361430_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361429_3361618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361631_3362114_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362176_3362428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363102_3364053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364481_3365084_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365206_3365449_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365454_3366510_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366538_3367957_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367959_3369237_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369223_3369709_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370348_3371299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371555_3372245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372237_3372489_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373043_3373655_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373726_3373933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374184_3375135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375233_3376307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376474_3377269_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377308_3377833_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377825_3379568_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379777_3380536_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380538_3381246_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381262_3382144_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382154_3382913_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382881_3383637_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383706_3385125_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385146_3385797_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385930_3386266_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386354_3387305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387381_3389202_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389206_3390280_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390402_3391371_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391444_3392356_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392374_3392947_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393027_3393576_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393575_3395165_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395234_3395474_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395514_3396540_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396605_3397787_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397883_3398336_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398345_3399686_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3400002_3401040_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401421_3401781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401864_3402806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402880_3403831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404124_3405219_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405309_3406182_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406203_3407043_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407118_3408636_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408732_3409833_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409849_3410272_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410294_3410507_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410553_3411474_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411656_3412406_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412408_3412738_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413025_3414378_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414389_3414773_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414834_3415635_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415733_3416684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011738	Bordetella pertussis strain I386 chromosome, complete genome	4104275	4003343	4068255	4104275	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4003343_4003829_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003917_4004055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004047_4005028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005294_4006104_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006143_4006824_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006817_4007276_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007287_4007650_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007732_4008416_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008471_4008780_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008798_4009113_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009109_4011584_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011591_4012983_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012979_4013165_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013143_4013845_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013841_4014663_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014643_4015768_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015760_4016780_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016985_4017876_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018120_4018912_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018994_4019369_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019346_4020756_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020748_4022131_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022465_4024070_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024147_4025119_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025129_4026056_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026446_4027397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027566_4028793_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028992_4029859_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029851_4030814_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030914_4031865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031963_4032914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033012_4033963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033959_4035453_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035449_4038557_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038553_4041622_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041618_4042869_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043049_4043802_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043843_4044488_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044496_4045477_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045576_4046320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046402_4046750_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046847_4047690_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047734_4048622_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048648_4048837_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048934_4050392_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050378_4051905_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051923_4052391_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052390_4053413_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053533_4054274_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054328_4055429_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055430_4056621_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056740_4057757_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058075_4058747_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058743_4059652_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059863_4060511_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064371_4065439_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065449_4066259_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066348_4067122_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067304_4068255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
