The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	27282	70036	4107398	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905499.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	77634	136108	4107398	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	164894	225405	4107398	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	233337	286925	4107398	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	468502	585348	4107398	tRNA,transposase	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|468502_469453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470175_471450_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471536_472619_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472629_473442_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473478_473805_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473809_474370_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474610_475603_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475621_476617_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476632_478009_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478001_480383_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480399_480789_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480915_481146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481250_482201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482299_483250_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483246_484119_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485049_486336_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486389_487316_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487334_487790_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488641_489433_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489464_490085_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490081_490711_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490723_491332_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491328_492318_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492423_493638_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495589_496540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497973_499260_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|499425_499734_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|499755_500400_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|500440_502231_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502343_503204_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|503200_504406_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504402_505287_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506803_507238_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507200_508199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508310_509456_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509530_510859_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510892_511483_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511772_512567_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513736_514471_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514477_515344_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515351_517127_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517169_517667_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517963_518914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519012_519963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520303_521254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523577_524726_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|524770_525394_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525546_526539_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526535_527273_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|527352_528174_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528262_529126_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529252_529489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531463_532498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|532556_533534_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533541_534462_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534458_536159_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536161_537067_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537110_538244_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538372_539323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539421_541491_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541533_543636_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543942_545019_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545094_545979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546161_546584_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546593_547994_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548036_548942_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549040_550582_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550616_551156_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551168_551639_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551776_552019_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552135_553017_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553089_553410_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|554261_555212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556535_557312_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557346_559119_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559120_560023_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560147_560507_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560538_561501_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561599_562550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562562_563498_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563557_564397_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564393_565563_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565559_566849_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566891_567266_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|567380_568109_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568116_568821_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569084_570605_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570660_571224_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571242_572274_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572270_573059_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|573234_574224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575980_576931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578153_579056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579057_579912_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579958_581068_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581078_581597_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581626_582259_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582330_582990_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|582986_584126_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584475_585348_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	589762	654644	4107398	tRNA,transposase	Pandoravirus(12.5%)	48	NA	NA
WP_010931363.1|589762_590779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591050_591677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|591732_592860_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592865_598583_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599150_600095_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600283_601219_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601336_602908_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602987_604196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604693_605611_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607971_608193_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608523_609540_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609624_609876_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609879_610695_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610807_611686_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611797_613561_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613676_615017_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616086_617511_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617510_618212_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619716_620667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620762_621734_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621738_622419_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622556_622949_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623056_624073_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624312_625098_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625192_626602_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626612_627413_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627433_628204_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|628246_628714_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628710_629661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930179.1|630743_631694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	673555	750864	4107398	tRNA,transposase,protease,integrase	Bacillus_phage(20.0%)	59	720692:720710	740580:740598
WP_023995489.1|673555_674506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674604_676080_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677667_678555_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678557_679499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679544_681110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682887_684213_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684395_685853_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685816_686314_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686344_687316_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687368_687800_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687929_688598_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689326_690430_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690535_691810_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691821_692847_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692848_694219_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694219_695356_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695402_697328_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697324_698446_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698442_699597_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699593_700724_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700731_702297_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702303_703686_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703964_704576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704667_706083_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706100_706811_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706807_708130_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708209_710171_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710296_711610_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711718_713017_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713199_714108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714117_714327_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714338_716018_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716119_717073_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717163_717991_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717989_719876_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719872_720472_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720520_721420_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721628_722579_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722701_723316_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729289_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736222_736423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736409_737360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_010929969.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749740_749896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1005155	1099192	4107398	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005155_1006106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006208_1006871_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006965_1007136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007488_1008490_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008492_1009689_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009709_1010513_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010593_1010890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010920_1011484_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011524_1012382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012389_1013139_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013160_1014033_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014061_1014841_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014874_1015672_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018326_1018719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018712_1019573_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019576_1020539_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021315_1022005_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022865_1023816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024165_1025035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025105_1025801_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025790_1026300_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026296_1027517_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027464_1028367_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029253_1030540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030578_1031952_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031990_1032692_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032990_1033980_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034080_1034542_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034557_1035106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035247_1036723_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036828_1037920_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037923_1038706_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038715_1039504_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040629_1041064_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041060_1042071_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042114_1043041_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043327_1043696_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043748_1043895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043912_1044863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044907_1047334_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047382_1048075_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048147_1049347_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049364_1050270_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050385_1051315_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051340_1052687_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052699_1053464_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053477_1054260_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054452_1055403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055464_1056574_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057086_1057923_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058049_1058958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058954_1059905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059922_1060093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060290_1060833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061868_1062819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063060_1063429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063474_1064599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065733_1066474_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066577_1067198_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067301_1068252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068248_1070357_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070501_1071161_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071192_1071657_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071932_1072118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072169_1072922_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072928_1074191_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074232_1075471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076548_1077676_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077686_1078514_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078500_1079367_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080733_1081138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081229_1082180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082197_1082362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082549_1083461_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083475_1084186_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084182_1085427_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085428_1085863_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085891_1086197_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086295_1087246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087302_1088451_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088531_1089482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090013_1090811_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090858_1091512_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091468_1092557_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092721_1094947_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097224_1098121_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098074_1098224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098241_1099192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1129577	1199500	4107398	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129577_1130528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130584_1131697_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134080_1135031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135621_1136398_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136515_1136779_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136879_1137884_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138084_1139686_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139711_1140470_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140561_1141218_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141308_1142073_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142082_1142271_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142326_1143370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143366_1143780_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143776_1144397_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144677_1145628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145795_1147187_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147259_1147838_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147954_1149352_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149467_1150673_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150772_1151291_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151385_1151631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151858_1152173_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152271_1157452_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157448_1159617_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159672_1161988_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161992_1163312_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163330_1165004_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165008_1165677_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165833_1169655_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169809_1169968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169985_1170936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170957_1172103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172251_1173181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173177_1174266_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174262_1175066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175062_1175794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175851_1177141_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177237_1177840_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182394_1182733_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183440_1183707_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185413_1186364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186360_1187692_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188952_1190953_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190945_1191587_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191583_1191991_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191987_1192788_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192862_1193567_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193598_1194393_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194389_1195340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195438_1195873_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195955_1198292_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010931363.1|1198483_1199500_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1246894	1323756	4107398	tRNA,transposase	Bacillus_virus(25.0%)	56	NA	NA
WP_010927663.1|1246894_1247845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247841_1248792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249052_1250081_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250160_1251459_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251455_1252037_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252349_1256396_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256636_1264298_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264294_1265245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266384_1266858_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266997_1267618_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1267753_1268554_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268608_1269700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1269721_1270165_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270193_1270826_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270936_1271353_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271345_1272038_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272144_1272519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1272595_1273405_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273500_1274445_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274483_1275455_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275545_1275983_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276041_1276923_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277926_1278787_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278819_1280202_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280198_1281218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281590_1282085_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282092_1282833_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282913_1284518_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284557_1285346_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1285471_1287637_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1288517_1289330_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289342_1289651_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289768_1291499_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1291500_1292703_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1292775_1293444_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293565_1294033_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294168_1295551_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295547_1296672_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296668_1299305_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299720_1300671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304417_1305029_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305251_1306712_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306808_1308401_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_162291322.1|1308754_1309012_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309013_1310354_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310449_1311139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311151_1312582_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314306_1315128_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315138_1316710_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316738_1317716_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317742_1318546_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318542_1319337_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319344_1320580_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1320593_1321007_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321756_1322707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1322805_1323756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1327867	1368536	4107398	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1327867_1328818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328858_1329929_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329951_1330830_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1331001_1331973_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332135_1332978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333139_1333820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1333813_1334983_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1334979_1336011_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1336078_1337296_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337330_1338863_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338943_1339567_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339597_1340209_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340244_1340715_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341146_1342151_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342187_1343702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343705_1344665_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344693_1345497_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345498_1347133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347216_1348278_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348476_1348746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348749_1349274_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1349689_1350640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350636_1351671_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351779_1352418_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352712_1352940_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353062_1353776_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|1354020_1354971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1355110_1355356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355470_1356919_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357029_1357980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357976_1358426_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358620_1359571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1359906_1360104_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1360119_1360479_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1360553_1361576_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1361588_1364006_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1364023_1364353_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1364411_1364822_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1365321_1366413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1366596_1367193_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1367292_1367475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1367585_1368536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1448213	1501393	4107398	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1448213_1449164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449181_1449334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449330_1449684_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449696_1450059_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450100_1450526_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450728_1451985_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452183_1453164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453313_1454555_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454653_1455604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455612_1456308_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459129_1459729_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459739_1461905_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461928_1463713_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463712_1463802_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464496_1464769_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464768_1466835_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466831_1467782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467897_1468230_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468226_1468913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468899_1469859_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469891_1472261_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472260_1472893_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472994_1474335_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474381_1475737_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476027_1476264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476451_1476769_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477041_1477557_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1477827_1478583_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478921_1479128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479135_1479795_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480089_1482294_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482404_1483628_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483750_1484725_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484792_1485986_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1486000_1486801_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486797_1488654_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488650_1489256_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489274_1490660_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491385_1492612_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492700_1493483_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493581_1494532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494558_1495332_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495343_1496585_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498366_1499317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1499348_1500446_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_010931070.1|1500442_1501393_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1543242	1611329	4107398	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1543242_1543731_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543848_1544427_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544532_1544901_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544999_1545950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545956_1547069_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547755_1548958_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1549161_1551822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1551834_1555239_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555906_1558132_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558178_1558505_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558555_1559164_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559262_1560213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560282_1561047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1561043_1561580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561746_1562598_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562657_1563284_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563280_1564231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564329_1565442_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565431_1566433_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566538_1568050_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568046_1569351_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569462_1570023_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570290_1570845_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571300_1571516_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571770_1574368_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574364_1575552_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1576211_1576826_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1576914_1578036_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578053_1578959_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579851_1580802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580983_1581736_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581804_1582464_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582460_1583189_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583201_1585481_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585505_1585709_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585750_1586383_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586518_1587436_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587432_1588146_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588383_1589154_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589158_1589758_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1590002_1591493_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591551_1591836_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1592401_1593328_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593464_1594205_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594371_1595748_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595929_1596835_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598486_1600289_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1600406_1601057_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601155_1602106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602127_1603348_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603533_1604946_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1605009_1606077_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606076_1607564_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607573_1608518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608677_1609376_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609453_1610359_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610378_1611329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1647278	1702818	4107398	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1647278_1648229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648287_1649061_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649053_1650610_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650606_1651557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652883_1653486_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653725_1654427_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654420_1655203_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655387_1656338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656436_1657174_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657363_1658122_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658168_1659158_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659335_1660304_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661843_1662812_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662820_1663762_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664235_1665246_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665236_1666751_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666747_1668094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1668096_1669131_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669180_1670806_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671358_1672309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672413_1673361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673414_1675229_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675221_1675896_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_077084135.1|1676025_1679049_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679062_1679362_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679676_1680300_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1680543_1681413_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681390_1682335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682420_1683347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683459_1684239_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684229_1685426_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685456_1686407_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686628_1687318_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687382_1688138_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688189_1689182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689191_1690145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690260_1691223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692624_1693053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693049_1694000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1694293_1695016_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695454_1696642_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1696645_1696996_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698745_1699717_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699730_1700444_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700448_1701366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701472_1701769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701867_1702818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	1935582	2005234	4107398	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935582_1938240_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938317_1939520_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939516_1940029_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940151_1940589_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940865_1941816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941914_1942865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1943028_1944924_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1945037_1945205_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945268_1945505_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1945873_1947025_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948588_1949539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1949990_1950992_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951164_1952022_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952018_1953281_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953381_1953756_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1953828_1955016_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955100_1955871_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1955984_1956749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956699_1958001_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1957997_1958804_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1960548_1961520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961676_1962189_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962347_1963322_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964322_1965117_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965142_1965949_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966059_1966650_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966660_1967839_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967941_1968316_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968568_1969900_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1969966_1973197_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974687_1975434_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975518_1975980_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976017_1977076_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977038_1978868_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978907_1979480_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980904_1981726_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982044_1983367_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983726_1984362_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984321_1985272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986142_1987015_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987092_1988232_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988590_1989847_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989852_1990380_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990384_1991203_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991202_1991925_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991946_1992261_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992278_1993427_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993457_1994333_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994329_1995649_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995721_1996918_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996928_1998416_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2001010_2001910_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002047_2003013_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003111_2004062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004283_2005234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2016730	2067175	4107398	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2016730_2017681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018818_2019115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019289_2020642_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020784_2021801_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023780_2024794_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2024880_2025786_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025942_2026287_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026444_2026903_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026916_2029133_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029129_2030191_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030219_2031194_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031145_2031964_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2031976_2032585_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2032759_2033155_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033173_2034613_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034641_2034989_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035007_2035958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036610_2037561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037659_2038610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038693_2040511_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040584_2041232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041244_2042174_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042343_2042808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043055_2043736_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043784_2045476_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045491_2046043_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046039_2046411_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046523_2047360_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047370_2047895_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2047992_2048172_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048301_2049276_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049406_2049763_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049752_2050628_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050726_2051611_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051632_2052928_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053876_2054527_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054614_2056135_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056392_2058258_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059303_2060254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060271_2060412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061226_2061586_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061573_2063010_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063006_2063660_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063656_2064850_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2064953_2066228_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066224_2067175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2078379	2119070	4107398	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2078379_2079330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079428_2080379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080338_2080752_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081036_2081336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081745_2084028_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084493_2084688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2084713_2086744_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086763_2086976_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087253_2087793_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087906_2089202_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089278_2090436_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090619_2091519_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091537_2092842_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092807_2093914_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094001_2094238_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094376_2095447_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095450_2096806_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096832_2097990_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2097995_2098634_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098635_2099931_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2099980_2101267_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101282_2101789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101785_2102934_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2102961_2103387_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103709_2106592_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106684_2107440_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108205_2109555_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109653_2110604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110702_2111653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111726_2112200_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112225_2113434_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113430_2114204_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114203_2114827_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2114992_2115253_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115556_2116138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116204_2116459_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116445_2119070_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2146853	2212402	4107398	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146853_2147804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148004_2148814_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2148938_2149889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149885_2150779_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150903_2151098_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151097_2151439_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151448_2153311_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153440_2153953_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2153955_2154279_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154280_2154691_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154728_2155940_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2155957_2156470_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156685_2157177_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157429_2159466_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159543_2160746_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160874_2161525_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163082_2164033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164603_2164816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164833_2165565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165599_2166241_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166233_2166902_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169114_2169891_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169912_2171070_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171066_2171498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171494_2172292_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172311_2172713_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172779_2173751_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173816_2175040_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175267_2176218_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176341_2178795_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2178983_2180288_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180392_2181046_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181048_2182359_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182537_2183116_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183227_2183428_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183773_2184340_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184423_2184627_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184933_2185254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185295_2185577_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185651_2186908_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187290_2187620_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189190_2190012_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190011_2191151_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191157_2192054_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192068_2193976_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194335_2196948_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197000_2199301_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199297_2200506_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200767_2201142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201138_2202089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202187_2204182_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204241_2205207_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205196_2208058_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208060_2208567_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208671_2209880_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209881_2210820_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2210981_2211455_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211451_2212402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2506049	2564293	4107398	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506049_2507000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507479_2508136_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508150_2509818_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509820_2510450_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510661_2511756_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511900_2512713_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512716_2514300_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514470_2515601_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515787_2516864_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516945_2517596_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517610_2519014_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519297_2520116_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520112_2520817_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521716_2522832_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522865_2523240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523262_2524420_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524432_2524666_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525300_2528270_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528284_2528494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528645_2529275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529271_2531329_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531385_2532066_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532062_2532623_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532629_2533727_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533879_2534473_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534469_2535762_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535775_2536318_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536327_2537164_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537197_2538259_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538300_2539353_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539368_2539671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539812_2540763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540780_2540945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540941_2542636_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542632_2543718_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543765_2544665_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544675_2545320_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546341_2549584_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549594_2550749_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2550975_2551938_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552036_2552987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553085_2554036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554045_2554735_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554794_2555232_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555277_2556171_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556218_2557391_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557387_2558542_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558738_2559089_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559078_2559513_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559529_2560480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560627_2561095_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561075_2562233_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562298_2563225_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563342_2564293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2606572	2673072	4107398	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606572_2607523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607892_2608465_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608467_2609478_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609470_2609971_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2609981_2610323_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610391_2611126_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611142_2611412_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611434_2612223_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612269_2613286_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613502_2614945_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615123_2616743_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616863_2618684_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618762_2620295_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620328_2621975_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622044_2623067_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623084_2624218_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624220_2624910_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624909_2625695_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625738_2626503_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626541_2627963_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628028_2628733_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628780_2629200_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629212_2629620_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629803_2630514_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630640_2630931_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630948_2631431_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635936_2637091_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637396_2638413_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638659_2639448_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639514_2640195_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640191_2640962_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641060_2642011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642066_2642984_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2642994_2644173_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644192_2645188_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646776_2647385_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647372_2648413_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648430_2649393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649389_2650583_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650579_2651377_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651402_2652389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652407_2654447_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654648_2655329_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655342_2656254_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656250_2656829_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2656967_2657873_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657880_2661300_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661287_2663888_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664843_2665476_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665869_2666628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666624_2667827_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668014_2668965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669872_2671018_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671004_2671760_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671876_2672056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672121_2673072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2835637	2901222	4107398	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2835637_2836588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836686_2837637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2837654_2837843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2837839_2838829_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838912_2839266_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839343_2839952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841625_2842204_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842228_2843182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843221_2844139_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844260_2845187_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845194_2845941_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846267_2847209_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847435_2849133_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849567_2850989_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851142_2851922_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852046_2852925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853030_2854155_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854200_2855163_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855155_2856010_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856117_2856528_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856524_2857475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857573_2858455_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858532_2859912_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859950_2860796_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860811_2861126_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861158_2861695_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861867_2862443_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862545_2863283_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863350_2864988_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865095_2865851_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865838_2866801_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866908_2867703_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867764_2869840_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870004_2872380_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872460_2873816_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875294_2876017_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876071_2877055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877184_2878135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878131_2879034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879121_2879880_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879892_2880984_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881081_2882509_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882738_2883953_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883998_2886869_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889279_2889768_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889893_2892590_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892744_2895027_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895192_2895825_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895923_2896874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896920_2897475_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897542_2898388_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898457_2899426_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899425_2901222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2918792	2976000	4107398	tRNA,transposase,holin	Catovirus(22.22%)	49	NA	NA
WP_010930190.1|2918792_2920313_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920355_2920658_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920654_2921287_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921365_2923231_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923227_2924022_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924050_2925166_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926070_2926949_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926948_2927773_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927940_2928891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929103_2931953_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931934_2932663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932803_2934267_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934263_2934635_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934652_2935966_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936002_2936461_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936415_2936556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936573_2937524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937520_2938534_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938673_2939660_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940018_2940726_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941306_2942257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942408_2943011_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943029_2943662_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943706_2943958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943899_2945786_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945804_2946647_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946643_2948002_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948222_2949017_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949247_2950741_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2950976_2953058_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953252_2954293_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954427_2955444_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955465_2956323_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956367_2957144_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2957356_2957494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2957511_2958462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958488_2958953_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960159_2962448_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962564_2963437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963479_2964634_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964668_2965499_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965582_2967127_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967169_2967529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967530_2967944_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967984_2968302_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968386_2969103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969366_2970788_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010930742.1|2972092_2973043_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2974983_2976000_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	2984621	3057138	4107398	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_023853536.1|2984621_2985638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986575_2988003_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987999_2989022_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989011_2989485_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989625_2990513_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990509_2992153_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992149_2993157_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993987_2995004_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995103_2995736_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995744_2996134_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996186_2997239_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998102_2999809_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999882_3000383_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000397_3002455_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002481_3002775_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002876_3003824_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003836_3004712_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004832_3005393_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005427_3005751_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006186_3006924_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007222_3008173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3008416_3008680_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008753_3009035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3009051_3009912_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009908_3010244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3010297_3010948_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012628_3013573_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013618_3013936_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013938_3014877_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3015054_3015540_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3015558_3016107_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3016138_3016291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3017620_3018262_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3018416_3020765_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020761_3021700_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021725_3022916_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022912_3023686_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023715_3024909_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3025026_3026037_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3026054_3028091_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3028285_3029026_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3029124_3030075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030117_3031293_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031514_3033305_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033317_3034979_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034991_3037697_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037989_3039744_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039740_3040367_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040363_3041215_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3041344_3043405_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043591_3044206_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044351_3044603_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044672_3046055_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046051_3049231_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050038_3050956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051007_3051739_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051798_3052371_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053879_3054896_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055033_3056083_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056187_3057138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	3076538	3141478	4107398	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3076538_3077489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077587_3078172_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078206_3079196_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079192_3080134_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080130_3081351_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081393_3081708_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081899_3082259_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082260_3083976_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084163_3084835_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084849_3086178_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086174_3087074_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087160_3088246_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088238_3089369_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089371_3092053_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092423_3093005_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093130_3093856_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093852_3094530_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094745_3095927_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096699_3096882_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096911_3097862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097991_3098384_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098660_3099572_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099696_3100671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100667_3101618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101716_3102802_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102899_3103310_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103925_3105839_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3105974_3108587_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108588_3109323_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109486_3110668_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110664_3110877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110873_3111854_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111899_3112727_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112876_3114691_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114745_3115129_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3115125_3116076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116188_3116440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3116633_3116849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116945_3118064_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118183_3118396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118555_3118777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118829_3119780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3120956_3122327_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122359_3123151_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123163_3124219_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3124244_3125120_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3125225_3125474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125508_3126963_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3126959_3127481_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127509_3128862_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129085_3131974_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134118_3135420_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3135434_3136151_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136432_3137113_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3137640_3138300_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138698_3140531_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140527_3141478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	3233101	3302104	4107398	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3233101_3234052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234048_3235068_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235077_3237786_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237933_3238590_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238688_3239639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239786_3240680_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240879_3242574_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242608_3243535_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243603_3244701_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244719_3245583_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245594_3246377_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246373_3247492_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247488_3249021_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249061_3250069_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250213_3250936_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250951_3251974_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252290_3253025_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253109_3254855_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254851_3255604_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255648_3256605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256693_3257260_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257267_3258128_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258157_3258886_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_023998704.1|3258917_3259601_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260438_3261353_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261417_3262326_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262416_3263841_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263842_3265165_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265161_3267300_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267377_3272498_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272598_3272907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3272976_3273534_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273549_3275031_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275085_3276939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277201_3278539_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278573_3280571_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280588_3282637_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282767_3283634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283902_3284868_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284982_3286131_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286555_3286867_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286900_3287161_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287310_3288444_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288514_3289651_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289816_3290611_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290673_3291117_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291232_3292183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292305_3292713_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292785_3294981_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295202_3296153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296112_3296637_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296768_3297740_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297859_3300304_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300319_3300910_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301153_3302104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	3317550	3417663	4107398	terminase,transposase,tail,protease,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317550_3318501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319232_3319610_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319594_3320296_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320439_3321132_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321131_3322235_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322344_3324717_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324713_3326273_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326297_3327095_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327126_3328272_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328376_3329819_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329821_3331051_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333188_3334139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335268_3335826_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335801_3336152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336320_3337115_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337111_3338161_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338160_3338850_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338936_3339434_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339465_3340782_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340798_3341773_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341809_3342268_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342267_3342948_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342950_3343379_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343431_3345162_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345227_3345800_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345780_3346467_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346822_3347494_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347822_3348044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348043_3348325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348321_3348837_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348836_3349388_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349366_3349609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349613_3350426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350425_3350689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350729_3350927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350907_3351324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351328_3355285_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355277_3355667_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355663_3356197_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356264_3356624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356633_3359246_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359271_3359562_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359579_3359909_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359918_3360437_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360691_3361192_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361199_3361622_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361618_3362017_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362013_3362409_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362408_3362597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362610_3363093_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363155_3363407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364081_3365032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365460_3366063_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366185_3366428_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366433_3367489_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367517_3368936_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368938_3370216_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370202_3370688_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371327_3372278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372295_3372517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372534_3373224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373216_3373468_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374022_3374634_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374705_3374912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3375163_3376114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376212_3377286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377453_3378248_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378287_3378812_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378804_3380547_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380756_3381515_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381517_3382225_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382241_3383123_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383133_3383892_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383860_3384616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384685_3386104_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386125_3386776_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386909_3387245_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387333_3388284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388360_3390181_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390185_3391259_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391381_3392350_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392423_3393335_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393353_3393926_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394006_3394555_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394554_3396144_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396213_3396453_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396493_3397519_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397584_3398766_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398862_3399315_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399324_3400665_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3400981_3402019_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402400_3402760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402843_3403785_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403859_3404810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405103_3406198_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406288_3407161_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407182_3408022_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408097_3409615_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409711_3410812_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410828_3411251_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411273_3411486_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411532_3412453_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412635_3413385_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413387_3413717_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3414004_3415357_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415368_3415752_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415813_3416614_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416712_3417663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011741	Bordetella pertussis strain I728 chromosome, complete genome	4107398	4006466	4071378	4107398	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006466_4006952_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007040_4007178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007170_4008151_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008417_4009227_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009266_4009947_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009940_4010399_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010410_4010773_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010855_4011539_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011594_4011903_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011921_4012236_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012232_4014707_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014714_4016106_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016102_4016288_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016266_4016968_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016964_4017786_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017766_4018891_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018883_4019903_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020108_4020999_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021243_4022035_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022117_4022492_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022469_4023879_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023871_4025254_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025588_4027193_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027270_4028242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028252_4029179_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029569_4030520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030689_4031916_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032115_4032982_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032974_4033937_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034037_4034988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035086_4036037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036135_4037086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037082_4038576_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038572_4041680_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041676_4044745_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044741_4045992_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046172_4046925_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046966_4047611_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047619_4048600_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048699_4049443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049525_4049873_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049970_4050813_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050857_4051745_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051771_4051960_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052057_4053515_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053501_4055028_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055046_4055514_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055513_4056536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056656_4057397_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057451_4058552_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058553_4059744_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059863_4060880_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061198_4061870_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061866_4062775_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062986_4063634_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067494_4068562_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068572_4069382_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069471_4070245_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_162291321.1|4070245_4070410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070427_4071378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
