The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	0	59497	4110592	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	70134	123122	4110592	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	165942	226453	4110592	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	234385	287973	4110592	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	391906	449415	4110592	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	591469	652660	4110592	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621669_621834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625078_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640146_641499_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648342_649215_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	657984	704175	4110592	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692906_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	710341	764271	4110592	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762790_763198_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	886860	1027428	4110592	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907857_908064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938654_938870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966134_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986830_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989701_990766_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991563_992472_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993959_995234_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995387_995768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995775_996648_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996953_997334_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997544_998270_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012098_1014159_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026477_1027428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1048379	1099041	4110592	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048379_1049330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049628_1050366_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050801_1051125_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051159_1051720_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051840_1052716_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052728_1053676_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053777_1054071_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054097_1056155_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056169_1056670_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056743_1058450_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059313_1060366_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060418_1060808_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060816_1061449_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061548_1062565_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063395_1064403_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064399_1066043_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066039_1066927_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067067_1067541_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067530_1068553_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068549_1069977_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070914_1071931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072263_1073199_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073248_1075129_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075195_1075540_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075684_1076821_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076817_1077891_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078048_1079485_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079575_1080217_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080552_1081569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083509_1084460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085764_1087186_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087449_1088166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088250_1088568_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088608_1089022_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089023_1089383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089425_1090970_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091053_1091884_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091918_1093073_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093115_1093988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094104_1096393_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097599_1098064_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098090_1099041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1114295	1179369	4110592	transposase,tRNA	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1114295_1115246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115826_1116534_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116892_1117879_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118018_1119032_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119028_1119979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1119996_1120137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120091_1120550_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120586_1121900_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121917_1122289_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122285_1123749_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123889_1124618_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124599_1127449_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127661_1128612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128779_1129604_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129603_1130482_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131386_1132502_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132530_1133325_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133321_1135187_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135265_1135898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135894_1136197_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136239_1137760_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137766_1138522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138551_1139656_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139758_1141459_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141440_1142418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142427_1143708_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143700_1144396_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144429_1145257_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145538_1148769_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149504_1153431_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155330_1157127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157126_1158095_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158164_1159010_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159077_1159632_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159678_1160629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160727_1161360_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161526_1163809_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163963_1166660_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166785_1167274_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169684_1172555_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172600_1173815_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174044_1175472_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175569_1176661_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176673_1177432_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177519_1178422_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178418_1179369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1319003	1387490	4110592	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319003_1319954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320722_1321361_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322250_1322697_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322778_1323480_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323480_1324248_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324244_1325483_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325482_1326409_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326511_1327627_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327642_1328593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328946_1329528_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329524_1330358_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330568_1331882_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332058_1332940_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332959_1333811_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333863_1334952_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335062_1336190_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336424_1337036_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337134_1338085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338306_1338684_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338831_1339329_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339325_1339853_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339986_1340802_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340814_1341996_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342043_1342937_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343063_1343534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343659_1344487_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344515_1345292_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345288_1345564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345578_1346043_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346054_1346756_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346865_1347366_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347448_1348627_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350254_1350590_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350777_1352226_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352283_1352628_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352734_1353274_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353366_1354317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354334_1354574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355055_1355487_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355668_1356073_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357309_1357633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357635_1358523_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358555_1358981_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359052_1359406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359645_1360152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360190_1361522_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361581_1362397_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362393_1363248_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366310_1368854_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370220_1371975_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371971_1374092_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374096_1376292_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376288_1379630_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382432_1383383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383448_1383628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383744_1384500_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384486_1385632_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386539_1387490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1447981	1503468	4110592	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447981_1448932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450133_1450580_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450572_1452048_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452044_1452800_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452792_1453803_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453792_1455469_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455781_1456114_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456127_1456523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456532_1456859_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456855_1457182_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1457108_1457522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458126_1458477_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458524_1458953_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458960_1460334_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460474_1460852_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461114_1462422_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462482_1463313_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463309_1463798_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463839_1465360_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465403_1465880_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466683_1469281_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469310_1470132_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470858_1471608_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471791_1472670_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472767_1473484_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473498_1474059_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474225_1474990_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475009_1475867_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475863_1477063_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477102_1478437_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478489_1480826_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480951_1481515_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481523_1482615_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482686_1483142_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483142_1483937_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483933_1485115_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485101_1485707_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485703_1486477_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486488_1487316_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487477_1489841_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489908_1490628_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490751_1491177_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491211_1492162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492279_1493206_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493271_1494429_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494409_1494877_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495024_1495975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495991_1496426_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496415_1496766_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496962_1498117_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498113_1499286_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499333_1500227_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500272_1500710_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500769_1501459_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502517_1503468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1598165	1658077	4110592	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598165_1598654_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598771_1599350_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599455_1599824_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599922_1600873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600879_1601992_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602678_1603881_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604084_1606745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606757_1610162_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610829_1613055_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613101_1613428_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613478_1614087_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614185_1615136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615234_1616185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616254_1617019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617015_1617552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617718_1618570_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618629_1619256_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619252_1620203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620301_1621414_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621403_1622405_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622510_1624022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624018_1625323_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625434_1625995_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626262_1626817_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627272_1627488_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627742_1630340_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630336_1631524_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632182_1632797_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632885_1634007_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634024_1634930_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635822_1636773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636954_1637707_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637775_1638435_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638431_1639160_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639172_1641452_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641476_1641680_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641721_1642354_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642489_1643407_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643403_1644117_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644354_1645125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645129_1645729_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645973_1647464_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647522_1647807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648372_1649299_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649435_1650176_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650342_1651719_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651900_1652806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654457_1656260_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656377_1657028_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657126_1658077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1703249	1758840	4110592	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703249_1704200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704258_1705032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705024_1706581_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706577_1707528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708854_1709457_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709696_1710398_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710391_1711174_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711358_1712309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712407_1713145_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713334_1714093_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714139_1715129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715306_1716275_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717814_1718783_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718791_1719733_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720206_1721217_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721207_1722722_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722718_1724065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724067_1725102_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725151_1726777_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727329_1728280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728384_1729332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729385_1731200_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731192_1731867_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731996_1735071_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735084_1735384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735698_1736322_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736565_1737435_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737412_1738357_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738442_1739369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739481_1740261_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740251_1741448_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741478_1742429_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742650_1743340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743404_1744160_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744211_1745204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745213_1746167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746282_1747245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748646_1749075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749071_1750022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750315_1751038_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751476_1752664_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752667_1753018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754767_1755739_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755752_1756466_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756470_1757388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757494_1757791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757889_1758840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	1991603	2061255	4110592	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991603_1994261_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994338_1995541_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995537_1996050_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996172_1996610_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996886_1997837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997935_1998886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999049_2000945_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001058_2001226_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001289_2001526_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001894_2003046_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004609_2005560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006011_2007013_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007185_2008043_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008039_2009302_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009402_2009777_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009849_2011037_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011121_2011892_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012005_2012770_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012720_2014022_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014018_2014825_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016569_2017541_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017697_2018210_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018368_2019343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020343_2021138_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021163_2021970_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022080_2022671_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022681_2023860_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023962_2024337_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024589_2025921_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025987_2029218_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030708_2031455_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031539_2032001_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032038_2033097_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033059_2034889_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034928_2035501_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036925_2037747_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038065_2039388_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039747_2040383_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040342_2041293_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042163_2043036_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043113_2044253_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044611_2045868_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045873_2046401_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046405_2047224_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047223_2047946_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047967_2048282_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048299_2049448_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049478_2050354_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050350_2051670_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051742_2052939_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052949_2054437_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057031_2057931_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058068_2059034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059132_2060083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060304_2061255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2072751	2122147	4110592	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072751_2073702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074839_2075136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075310_2076663_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076805_2077822_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079801_2080815_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080901_2081807_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081963_2082308_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082465_2082924_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082937_2085154_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085150_2086212_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086240_2087215_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087166_2087985_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087997_2088606_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088780_2089176_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089194_2090634_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090662_2091010_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091028_2091979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092631_2093582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093665_2095483_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095556_2096204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096216_2097146_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097315_2097780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098027_2098708_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098756_2100448_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100463_2101015_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101011_2101383_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101495_2102332_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102342_2102867_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102964_2103144_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103273_2104248_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104378_2104735_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104724_2105600_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105698_2106583_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106604_2107900_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108848_2109499_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109586_2111107_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111364_2113230_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114275_2115226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115243_2115384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116198_2116558_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116545_2117982_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117978_2118632_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118628_2119822_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119925_2121200_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121196_2122147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2133351	2174042	4110592	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133351_2134302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134400_2135351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135310_2135724_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136008_2136308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136717_2139000_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139465_2139660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139685_2141716_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141735_2141948_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142225_2142765_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142878_2144174_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144250_2145408_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145591_2146491_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146509_2147814_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147779_2148886_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148973_2149210_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149348_2150419_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150422_2151778_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151804_2152962_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152967_2153606_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153607_2154903_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154952_2156239_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156254_2156761_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156757_2157906_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157933_2158359_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158681_2161564_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161656_2162412_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163177_2164527_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164625_2165576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165674_2166625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166698_2167172_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167197_2168406_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168402_2169176_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169175_2169799_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169964_2170225_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170528_2171110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171176_2171431_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171417_2174042_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2201825	2267374	4110592	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201825_2202776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202976_2203786_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203910_2204861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204857_2205751_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205875_2206070_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206069_2206411_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206420_2208283_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208412_2208925_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208927_2209251_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209252_2209663_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209700_2210912_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210929_2211442_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211657_2212149_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212401_2214438_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214515_2215718_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215846_2216497_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218054_2219005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219575_2219788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219805_2220537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220571_2221213_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221205_2221874_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224086_2224863_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224884_2226042_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226038_2226470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226466_2227264_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227283_2227685_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227751_2228723_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228788_2230012_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230239_2231190_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231313_2233767_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233955_2235260_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235364_2236018_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236020_2237331_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237509_2238088_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238199_2238400_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238745_2239312_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239395_2239599_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239905_2240226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240267_2240549_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240623_2241880_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242262_2242592_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244162_2244984_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244983_2246123_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246129_2247026_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247040_2248948_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249307_2251920_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251972_2254273_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254269_2255478_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255739_2256114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256110_2257061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257159_2259154_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259213_2260179_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260168_2263030_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263032_2263539_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263643_2264852_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264853_2265792_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265953_2266427_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266423_2267374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2353551	2417129	4110592	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2353551_2354502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354803_2355280_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355903_2357541_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2357571_2358885_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2359018_2359336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2359436_2360759_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360755_2361706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2361804_2362755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2363284_2364307_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2364335_2365166_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2365182_2366880_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2366944_2368021_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2368180_2369044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2369074_2369644_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2369660_2370512_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2371569_2372451_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2372525_2373515_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2373577_2374528_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2374590_2375448_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2375507_2375996_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2377568_2378759_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2378755_2380342_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2380360_2381428_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2381532_2383077_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2383496_2385071_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2385187_2386195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2386191_2387031_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2387035_2388673_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2388669_2389620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2389637_2389781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2389762_2391037_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2391066_2391357_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2391429_2392443_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2392462_2393725_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2393727_2394651_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2394647_2396141_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2396151_2397084_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2397265_2398591_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2398625_2399981_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2400041_2401562_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2401716_2402448_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2402545_2403856_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2403871_2404783_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2404773_2405367_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2405428_2405815_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2405826_2406297_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2406308_2406932_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2406952_2409700_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2416178_2417129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2537277	2602998	4110592	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2537277_2539221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2539217_2540138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2540157_2540745_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2540737_2541628_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2541624_2542386_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2542391_2543276_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2543298_2545092_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2545222_2546710_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546747_2547806_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2547805_2548306_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2548318_2548918_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548914_2549415_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2549416_2550646_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550835_2551075_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2551257_2552010_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2552011_2552947_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2553028_2554015_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2554014_2555073_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2555129_2555312_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2555363_2555957_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2556065_2556665_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556661_2557372_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2557373_2558201_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2560017_2561259_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561270_2562044_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562070_2563021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563119_2563902_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563990_2565217_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565942_2567328_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567346_2567952_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567948_2569805_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569801_2570602_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570616_2571810_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571877_2572852_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572974_2574198_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574308_2576513_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576807_2577467_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577474_2577681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578019_2578775_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579045_2579561_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579833_2580151_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580338_2580575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580865_2582221_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582267_2583608_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583709_2584342_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584341_2586711_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586743_2587703_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587689_2588376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588372_2588705_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588820_2589771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589869_2590820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590816_2592883_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592882_2593155_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593849_2593939_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593938_2595723_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595746_2597912_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597922_2598522_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2601343_2602039_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2602047_2602998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2689115	2729784	4110592	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689115_2690066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690176_2690359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690458_2691055_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691238_2692330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692829_2693240_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693298_2693628_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693645_2696063_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696075_2697098_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697172_2697532_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697547_2697745_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698080_2699031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699225_2699675_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699671_2700622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700732_2702181_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702295_2702541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702680_2703631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703875_2704589_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704711_2704939_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705233_2705872_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705980_2707015_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707011_2707962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708377_2708902_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708905_2709175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709373_2710435_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710518_2712153_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712154_2712958_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712986_2713946_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713949_2715464_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715500_2716505_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716936_2717407_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717442_2718054_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718084_2718708_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718788_2720321_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720355_2721573_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721640_2722672_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722668_2723838_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723831_2724512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724673_2725516_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725678_2726650_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726821_2727700_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727722_2728793_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728833_2729784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2785249	2858119	4110592	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785249_2785666_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785776_2786409_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786437_2786881_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786902_2787994_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788048_2788849_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788984_2789605_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789744_2790218_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791357_2792308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792304_2799966_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800206_2804253_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804565_2805147_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805143_2806442_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806521_2807550_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807810_2808761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808757_2809708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810024_2810630_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810683_2811997_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812071_2812542_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812541_2813330_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813340_2814993_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815080_2816031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817192_2817699_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817695_2818460_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818475_2818760_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818824_2819814_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819985_2820915_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820886_2821573_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821606_2822152_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822196_2823462_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823458_2824361_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825542_2826487_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826581_2828099_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828140_2829769_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829876_2830758_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833870_2834245_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834269_2834608_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834651_2836286_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836324_2837671_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837778_2839200_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839269_2839854_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839956_2840907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841041_2842148_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842158_2843256_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843400_2844606_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844612_2845134_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845130_2845613_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845618_2845870_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845850_2846336_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846471_2849933_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849950_2850835_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850844_2851276_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851522_2852026_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852103_2853504_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853578_2854454_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854450_2855458_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855925_2856231_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856321_2856912_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857102_2858119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2861262	2928072	4110592	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861262_2862213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862311_2863262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863258_2864053_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864084_2864789_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864863_2865664_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865660_2866068_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866064_2866706_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866698_2868699_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869959_2871291_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871287_2872238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873944_2874211_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874918_2875257_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879809_2880412_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880508_2881798_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881855_2882587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882583_2883387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883383_2884472_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884468_2885398_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885546_2886692_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886713_2887664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887681_2887840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887994_2891816_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891972_2892641_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892645_2894319_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894337_2895657_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895661_2897977_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898032_2900201_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900197_2905378_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905476_2905791_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906018_2906264_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906358_2906877_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906976_2908182_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908297_2909695_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909811_2910390_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910462_2911854_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912021_2912972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913252_2913873_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913869_2914283_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914279_2915323_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915378_2915567_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915576_2916341_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916431_2917088_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917179_2917938_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917963_2919565_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919765_2920770_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920870_2921134_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921251_2922028_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922618_2923569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925952_2927065_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927121_2928072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	2958457	2997646	4110592	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958457_2959408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959425_2959575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959528_2960425_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962702_2964928_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965092_2966181_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966137_2966791_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966838_2967636_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968167_2969118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969198_2970347_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970403_2971354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971452_2971758_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971786_2972221_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972222_2973467_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973463_2974174_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974188_2975100_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975462_2975867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975863_2976322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976328_2977237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977233_2978100_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978086_2978914_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978924_2980052_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981129_2982368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982409_2983672_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983678_2984431_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984482_2984668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984943_2985408_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985439_2986099_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986243_2988352_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988348_2989299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989402_2990023_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990126_2990867_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992001_2993126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993171_2993540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993781_2994732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995767_2996310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996507_2996678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996695_2997646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	3383142	3503387	4110592	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3383142_3384093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384497_3385142_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385166_3385751_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385851_3386469_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386471_3388187_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388183_3388492_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388508_3389126_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389170_3389473_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389573_3390428_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390615_3390840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391009_3391282_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391699_3392107_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392476_3393271_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393371_3394607_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394675_3395692_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395703_3397080_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397076_3398273_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398269_3399808_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399804_3401064_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403004_3403955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404721_3405816_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405808_3407143_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407096_3407780_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407805_3408969_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408965_3409967_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409966_3410839_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410835_3411585_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411581_3412373_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412369_3413509_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413784_3414570_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414603_3415386_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415389_3415779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416918_3417782_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417817_3418906_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418902_3419853_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420206_3423185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424111_3424990_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425954_3426905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427987_3428938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428934_3429402_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429444_3430215_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430235_3431036_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431046_3432456_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432550_3433336_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433575_3434592_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434699_3435092_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435229_3435910_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435914_3436886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436981_3437932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439436_3440138_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440137_3441562_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442631_3443972_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444087_3445851_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445962_3446841_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446953_3447769_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447772_3448024_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448108_3449125_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449455_3449677_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452037_3452955_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453452_3454661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454740_3456312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456429_3457365_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457553_3458498_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459065_3464783_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464788_3465916_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465971_3466598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466869_3467886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467981_3468692_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468688_3469678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469773_3471405_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471407_3472145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472300_3473173_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473522_3474662_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474658_3475318_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475389_3476022_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476051_3476570_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476580_3477690_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477736_3478591_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478592_3479495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480717_3481668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483424_3484414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484589_3485378_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485374_3486406_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486424_3486988_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487043_3488564_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488827_3489532_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489539_3490268_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490382_3490757_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490799_3492089_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492085_3493255_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493251_3494091_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494150_3495086_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495098_3496049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496147_3497110_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497141_3497501_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497625_3498528_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498529_3500302_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500336_3501113_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502436_3503387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	3518325	3576398	4110592	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518325_3519276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519404_3520538_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520581_3521487_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521489_3523190_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523186_3524107_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524114_3525092_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525150_3526185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528159_3528396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528522_3529386_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529474_3530296_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530375_3531113_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531109_3532102_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532254_3532878_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532922_3534071_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536394_3537345_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537685_3538636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538734_3539685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539981_3540479_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540521_3542297_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542304_3543171_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543177_3543912_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545081_3545876_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546165_3546756_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546789_3548118_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548192_3549338_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549449_3550448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550410_3550845_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552361_3553246_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553242_3554448_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554444_3555305_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555417_3557208_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557248_3557893_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557914_3558223_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558388_3559675_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561108_3562059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564010_3565225_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565330_3566320_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566316_3566925_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566937_3567567_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567563_3568184_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568215_3569007_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569858_3570314_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570332_3571259_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571312_3572599_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573529_3574402_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574398_3575349_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575447_3576398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011745	Bordetella pertussis strain I762 chromosome, complete genome	4110592	4009660	4074572	4110592	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009660_4010146_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010234_4010372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010364_4011345_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011611_4012421_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012460_4013141_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013134_4013593_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013604_4013967_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014049_4014733_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014788_4015097_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015115_4015430_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015426_4017901_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017908_4019300_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019296_4019482_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019460_4020162_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020158_4020980_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020960_4022085_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022077_4023097_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023302_4024193_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024437_4025229_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025311_4025686_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025663_4027073_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027065_4028448_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028782_4030387_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030464_4031436_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031446_4032373_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032763_4033714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033883_4035110_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035309_4036176_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036168_4037131_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037231_4038182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038280_4039231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039329_4040280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040276_4041770_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041766_4044874_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044870_4047939_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047935_4049186_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049366_4050119_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050160_4050805_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050813_4051794_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051893_4052637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052719_4053067_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053164_4054007_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054051_4054939_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054965_4055154_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055251_4056709_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056695_4058222_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058240_4058708_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058707_4059730_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059850_4060591_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060645_4061746_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061747_4062938_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063057_4064074_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064392_4065064_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065060_4065969_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066180_4066828_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070688_4071756_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071766_4072576_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072665_4073439_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073439_4073604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073621_4074572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
