The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	27282	70036	4104353	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	232666	307010	4104353	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853374.1|250698_250839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	489373	607268	4104353	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521675_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546690_547314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589300_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604906_606046_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	611682	675515	4104353	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	694426	771735	4104353	protease,transposase,integrase,tRNA	Bacillus_phage(20.0%)	59	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708239_708671_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711406_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750160_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757280_758231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770611_770767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1027072	1120060	4104353	transposase	Bacillus_virus(30.0%)	86	NA	NA
WP_005012067.1|1027072_1028023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028125_1028788_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028882_1029053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029405_1030407_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030409_1031606_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031626_1032430_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1032510_1032807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032837_1033401_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033441_1034299_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034306_1035056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035077_1035950_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035978_1036758_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036791_1037589_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040243_1040636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040629_1041490_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041493_1042456_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043232_1043922_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044782_1045733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046082_1046952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047022_1047718_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047707_1048217_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048213_1049434_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049381_1050284_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051170_1052457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052495_1053869_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053907_1054609_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054907_1055897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055997_1056459_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056474_1057023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1057164_1058640_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058745_1059837_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059840_1060623_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060632_1061421_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062546_1062981_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062977_1063988_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064031_1064958_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065244_1065613_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1065665_1065812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1065829_1066780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066824_1069251_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069299_1069992_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070064_1071264_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071281_1072187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072302_1073232_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073257_1074604_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1074616_1075381_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1075394_1076177_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076369_1077320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077381_1078491_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079003_1079840_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1079966_1080875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080871_1081822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1081839_1082010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1082207_1082750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083785_1084736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084977_1085346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085391_1086516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1087650_1088391_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088494_1089115_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089218_1090169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090165_1092274_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092418_1093078_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093109_1093574_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093849_1094035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094086_1094839_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094845_1096108_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096149_1097388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098465_1099593_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099603_1100431_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100417_1101284_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102650_1103055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103417_1104329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104343_1105054_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105050_1106295_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106296_1106731_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106759_1107065_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107163_1108114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1108170_1109319_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109399_1110350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110881_1111679_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111726_1112380_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112336_1113425_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113589_1115815_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118092_1118989_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1118942_1119092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1119109_1120060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1150444	1221415	4104353	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1150444_1151395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151451_1152564_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154947_1155898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156488_1157265_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157382_1157646_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157746_1158751_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158951_1160553_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160578_1161337_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161428_1162085_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162175_1162940_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162949_1163138_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163193_1164237_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164233_1164647_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164643_1165264_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165544_1166495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166662_1168054_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168126_1168705_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168821_1170219_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170334_1171540_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171639_1172158_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172252_1172498_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172725_1173040_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1173138_1178319_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178315_1180484_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180539_1182855_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182859_1184179_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184197_1185871_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185875_1186544_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186700_1190522_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1190676_1190835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1190852_1191803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191824_1192970_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193118_1194048_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194044_1195133_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195129_1195933_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195929_1196661_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196718_1198008_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198104_1198707_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203260_1203599_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204306_1204573_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206279_1207230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207226_1208558_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209818_1211819_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211811_1212453_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212449_1212857_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212853_1213654_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213728_1214433_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214464_1215259_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215255_1216206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216304_1217255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217353_1217788_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217870_1220207_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220398_1221415_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1268809	1349684	4104353	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1268809_1269760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269756_1270707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270967_1271996_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272075_1273374_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273370_1273952_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274264_1278311_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278551_1286213_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286209_1287160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288299_1288773_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288912_1289533_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1289668_1290469_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290523_1291615_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1291636_1292080_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292108_1292741_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292851_1293268_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293260_1293953_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294059_1294434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1294510_1295320_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295415_1296360_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296398_1297370_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297460_1297898_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297956_1298838_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299841_1300702_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300734_1302117_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302113_1303133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303505_1304000_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304007_1304748_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304828_1306433_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306472_1307261_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1307386_1309552_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1310432_1311245_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311257_1311566_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311683_1313414_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1313415_1314618_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1314690_1315359_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315480_1315948_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316083_1317466_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317462_1318587_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318583_1321220_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321635_1322586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326332_1326944_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327166_1328627_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328723_1330316_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330669_1330927_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330928_1332269_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332364_1333054_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333066_1334497_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336221_1337043_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337053_1338625_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338653_1339631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339657_1340461_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340457_1341252_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341259_1342495_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1342508_1342922_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343671_1344622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345243_1346971_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347082_1348441_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1348497_1348716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1348733_1349684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1469075	1521228	4104353	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1469075_1470026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1470043_1470196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1470192_1470546_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470558_1470921_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470962_1471388_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471590_1472847_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473045_1474026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474175_1475417_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475515_1476466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476474_1477170_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479991_1480591_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480601_1482767_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482790_1484575_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484574_1484664_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485358_1485631_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485630_1487697_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487693_1488644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488742_1489693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489808_1490141_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490137_1490824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1490810_1491770_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1491802_1494172_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494171_1494804_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494905_1496246_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496292_1497648_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1497938_1498175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498362_1498680_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498952_1499468_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1499738_1500494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500832_1501039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501046_1501706_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1502000_1504205_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504315_1505539_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505661_1506636_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506703_1507897_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507911_1508712_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508708_1510565_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510561_1511167_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511185_1512571_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513296_1514523_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1514611_1515394_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1515492_1516443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1516469_1517243_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1517254_1518496_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1520277_1521228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1565153	1633239	4104353	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1565153_1565642_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565759_1566338_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1566443_1566812_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566910_1567861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567867_1568980_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569666_1570869_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1571072_1573733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1573745_1577150_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577817_1580043_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1580089_1580416_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1580466_1581075_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1581173_1582124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1582193_1582958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1582954_1583491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583657_1584509_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584568_1585195_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585191_1586142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1586240_1587353_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1587342_1588344_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1588449_1589961_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589957_1591262_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1591373_1591934_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1592201_1592756_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1593211_1593427_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593681_1596279_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1596275_1597463_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1598121_1598736_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1598824_1599946_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599963_1600869_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1601761_1602712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602893_1603646_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603714_1604374_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1604370_1605099_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1605111_1607391_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1607415_1607619_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607660_1608293_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1608428_1609346_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1609342_1610056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1610293_1611064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1611068_1611668_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611912_1613403_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1613461_1613746_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1614311_1615238_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615374_1616115_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1616281_1617658_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617839_1618745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1620396_1622199_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1622316_1622967_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1623065_1624016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1624037_1625258_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1625443_1626856_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626919_1627987_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1627986_1629474_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1629483_1630428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630587_1631286_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1631363_1632269_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1632288_1633239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1669188	1724779	4104353	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1669188_1670139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1670197_1670971_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670963_1672520_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1672516_1673467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674793_1675396_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675635_1676337_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1676330_1677113_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1677297_1678248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1678346_1679084_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1679273_1680032_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1680078_1681068_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1681245_1682214_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683753_1684722_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684730_1685672_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1686145_1687156_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1687146_1688661_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688657_1690004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1690006_1691041_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1691090_1692716_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1693268_1694219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1694323_1695271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1695324_1697139_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1697131_1697806_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697935_1701010_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1701023_1701323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701637_1702261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1702504_1703374_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1703351_1704296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1704381_1705308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1705420_1706200_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1706190_1707387_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1707417_1708368_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708589_1709279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1709343_1710099_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1710150_1711143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1711152_1712106_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1712221_1713184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714585_1715014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1715010_1715961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1716254_1716977_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1717415_1718603_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1718606_1718957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720706_1721678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721691_1722405_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1722409_1723327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1723433_1723730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723828_1724779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	1958593	2028245	4104353	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1958593_1961251_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1961328_1962531_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1962527_1963040_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1963162_1963600_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963876_1964827_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964925_1965876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1966039_1967935_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1968048_1968216_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1968279_1968516_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1968884_1970036_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971599_1972550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1973001_1974003_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1974175_1975033_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1975029_1976292_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1976392_1976767_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1976839_1978027_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1978111_1978882_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978995_1979760_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979710_1981012_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1981008_1981815_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1983559_1984531_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984687_1985200_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1985358_1986333_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1987333_1988128_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1988153_1988960_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1989070_1989661_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989671_1990850_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990952_1991327_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991579_1992911_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992977_1996208_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997698_1998445_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1998529_1998991_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1999028_2000087_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2000049_2001879_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001918_2002491_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003915_2004737_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2005055_2006378_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006737_2007373_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2007332_2008283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2009153_2010026_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2010103_2011243_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011601_2012858_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012863_2013391_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2013395_2014214_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2014213_2014936_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014957_2015272_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2015289_2016438_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2016468_2017344_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2017340_2018660_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018732_2019929_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019939_2021427_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2024021_2024921_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2025058_2026024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2026122_2027073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2027294_2028245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2039741	2089137	4104353	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039741_2040692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041829_2042126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2042300_2043653_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043795_2044812_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046791_2047805_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2047891_2048797_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048953_2049298_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2049455_2049914_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049927_2052144_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2052140_2053202_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2053230_2054205_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2054156_2054975_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054987_2055596_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2055770_2056166_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2056184_2057624_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057652_2058000_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2058018_2058969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059621_2060572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060655_2062473_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062546_2063194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2063206_2064136_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2064305_2064770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2065017_2065698_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065746_2067438_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2067453_2068005_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2068001_2068373_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2068485_2069322_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2069332_2069857_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069954_2070134_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2070263_2071238_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2071368_2071725_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071714_2072590_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072688_2073573_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073594_2074890_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075838_2076489_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2076576_2078097_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2078354_2080220_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2081265_2082216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2082233_2082374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2083188_2083548_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2083535_2084972_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084968_2085622_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085618_2086812_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086915_2088190_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2088186_2089137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2100341	2141032	4104353	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2100341_2101292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2101390_2102341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2102300_2102714_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2102998_2103298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103707_2105990_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2106675_2108706_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108725_2108938_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2109215_2109755_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109868_2111164_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2111240_2112398_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112581_2113481_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2113499_2114804_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114769_2115876_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115963_2116200_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2116338_2117409_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2117412_2118768_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2118794_2119952_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119957_2120596_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2120597_2121893_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2121942_2123229_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2123244_2123751_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123747_2124896_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124923_2125349_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125671_2128554_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128646_2129402_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2130167_2131517_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131615_2132566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132664_2133615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133688_2134162_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2134187_2135396_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2135392_2136166_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2136165_2136789_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136954_2137215_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2137518_2138100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2138166_2138421_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2138407_2141032_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2168814	2234363	4104353	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168814_2169765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169965_2170775_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2170899_2171850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171846_2172740_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172864_2173059_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2173058_2173400_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2173409_2175272_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2175401_2175914_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175916_2176240_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2176241_2176652_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176689_2177901_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177918_2178431_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178646_2179138_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2179390_2181427_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2181504_2182707_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182835_2183486_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2185043_2185994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186564_2186777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186794_2187526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187560_2188202_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2188194_2188863_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2191075_2191852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191873_2193031_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2193027_2193459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2193455_2194253_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2194272_2194674_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194740_2195712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195777_2197001_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2197228_2198179_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2198302_2200756_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200944_2202249_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2202353_2203007_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2203009_2204320_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2204498_2205077_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2205188_2205389_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205734_2206301_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2206384_2206588_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206894_2207215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2207256_2207538_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207612_2208869_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2209251_2209581_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2211151_2211973_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211972_2213112_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2213118_2214015_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2214029_2215937_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2216296_2218909_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218961_2221262_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2221258_2222467_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2222728_2223103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2223099_2224050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2224148_2226143_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2226202_2227168_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2227157_2230019_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2230021_2230528_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230632_2231841_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231842_2232781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232942_2233416_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2233412_2234363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2528010	2586254	4104353	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2528010_2528961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2529440_2530097_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2530111_2531779_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2531781_2532411_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2532622_2533717_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2533861_2534674_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2534677_2536261_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2536431_2537562_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2537748_2538825_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2538906_2539557_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2539571_2540975_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2541258_2542077_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2542073_2542778_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2543677_2544793_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2544826_2545201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2545223_2546381_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2546393_2546627_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2547261_2550231_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2550245_2550455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2550606_2551236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2551232_2553290_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2553346_2554027_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2554023_2554584_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2554590_2555688_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2555840_2556434_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2556430_2557723_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2557736_2558279_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2558288_2559125_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2559158_2560220_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2560261_2561314_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2561329_2561632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2561773_2562724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2562741_2562906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2562902_2564597_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2564593_2565679_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2565726_2566626_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2566636_2567281_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2568302_2571545_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2571555_2572710_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2572936_2573899_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2573997_2574948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2575046_2575997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2576006_2576696_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2576755_2577193_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2577238_2578132_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2578179_2579352_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2579348_2580503_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2580699_2581050_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2581039_2581474_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2581490_2582441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2582588_2583056_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2583036_2584194_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2584259_2585186_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2585303_2586254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2628532	2695032	4104353	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2628532_2629483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2629852_2630425_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2630427_2631438_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2631430_2631931_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2631941_2632283_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2632351_2633086_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2633102_2633372_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2633394_2634183_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2634229_2635246_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2635462_2636905_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2637083_2638703_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2638823_2640644_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2640722_2642255_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2642288_2643935_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2644004_2645027_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2645044_2646178_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2646180_2646870_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2646869_2647655_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2647698_2648463_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2648501_2649923_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2649988_2650693_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2650740_2651160_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2651172_2651580_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2651763_2652474_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2652600_2652891_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2652908_2653391_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2657896_2659051_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2659356_2660373_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2660619_2661408_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2661474_2662155_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2662151_2662922_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2663020_2663971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2664026_2664944_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2664954_2666133_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2666152_2667148_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2668736_2669345_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2669332_2670373_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2670390_2671353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2671349_2672543_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2672539_2673337_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2673362_2674349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2674367_2676407_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2676608_2677289_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2677302_2678214_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2678210_2678789_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2678927_2679833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2679840_2683260_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2683247_2685848_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2686803_2687436_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2687829_2688588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2688584_2689787_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2689974_2690925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2691832_2692978_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2692964_2693720_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2693836_2694016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2694081_2695032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	2877433	3028098	4104353	holin,transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	119	NA	NA
WP_010929956.1|2877433_2878384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2878482_2879364_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2879441_2880821_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2880859_2881705_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2881720_2882035_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2882067_2882604_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2882776_2883352_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2883454_2884192_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2884259_2885897_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2886004_2886760_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2886747_2887710_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2887817_2888612_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2888673_2890749_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2890913_2893289_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2893369_2894725_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2896203_2896926_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2896980_2897964_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2898093_2899044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2899040_2899943_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2900030_2900789_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2900801_2901893_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2901990_2903418_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2903647_2904862_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2904907_2907778_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2910188_2910677_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2910802_2913499_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2913653_2915936_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2916100_2916733_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2916831_2917782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2917828_2918383_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2918450_2919296_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2919365_2920334_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2920333_2922130_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2924029_2927956_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2928691_2931922_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2932203_2933031_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2933064_2933760_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2933752_2935033_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2935042_2936020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2936001_2937702_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2937804_2938908_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2938938_2939694_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2939700_2941221_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2941263_2941566_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2941562_2942195_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2942273_2944139_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2944135_2944930_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2944958_2946074_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2946978_2947857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2947856_2948681_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2948848_2949799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2950011_2952861_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2952842_2953571_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2953711_2955175_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2955171_2955543_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2955560_2956874_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2956910_2957369_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2957323_2957464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2957481_2958432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2958428_2959442_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2959581_2960568_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2960926_2961634_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2962214_2963165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2963316_2963919_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2963937_2964570_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2964614_2964866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2964807_2966694_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2966712_2967555_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2967551_2968910_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2969130_2969925_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2970155_2971649_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2971884_2973966_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2974160_2975201_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2975335_2976352_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2976373_2977231_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2977275_2978052_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2978264_2978402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2978419_2979370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2979396_2979861_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2981067_2983356_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2983472_2984345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2984387_2985542_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2985576_2986407_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2986490_2988035_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2988077_2988437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2988438_2988852_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2988892_2989210_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2989294_2990011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2990274_2991696_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2994368_2995319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2995298_2995553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2995891_2996908_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2997243_2997885_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2997975_2999412_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2999569_3000643_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3000639_3001776_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3001920_3002265_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3002331_3004212_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3004261_3005197_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_015041211.1|3007442_3008870_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3008866_3009889_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3009878_3010352_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3010492_3011380_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3011376_3013020_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3013016_3014024_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3014854_3015871_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3015970_3016603_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3016611_3017001_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3017053_3018106_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3018969_3019734_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3019807_3020308_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3020322_3022380_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3022406_3022700_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3022801_3023749_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3023761_3024637_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3024757_3025318_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3025352_3025676_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3026111_3026849_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3027147_3028098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	3049049	3121543	4104353	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3049049_3050000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3050042_3051218_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3051439_3053230_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3053242_3054904_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3054916_3057622_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3057914_3059669_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3059665_3060292_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3060288_3061140_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3061269_3063330_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3063516_3064131_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3064276_3064528_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3064597_3065980_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3065976_3069156_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3069963_3070881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3070932_3071664_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3071723_3072296_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3073804_3074821_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3074958_3076008_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3076112_3077063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3077158_3077884_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3078094_3078475_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3078780_3079653_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3079660_3080041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3080194_3081469_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3082956_3083865_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3084662_3085727_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3087563_3088598_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3088787_3089429_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3089511_3091338_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3091581_3092511_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3092510_3093260_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3093331_3094246_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3094265_3095411_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3095471_3096383_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3096463_3097414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3097512_3098097_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3098131_3099121_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3099117_3100059_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3100055_3101276_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3101318_3101633_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3101824_3102184_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3102185_3103901_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3104088_3104760_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3104774_3106103_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3106099_3106999_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3107085_3108171_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3108163_3109294_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3109296_3111978_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3112348_3112930_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3113055_3113781_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3113777_3114455_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3114670_3115852_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3116624_3116807_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3116836_3117787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3117916_3118309_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3118585_3119497_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3119621_3120596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3120592_3121543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	3253026	3322029	4104353	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3253026_3253977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3253973_3254993_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3255002_3257711_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3257858_3258515_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3258613_3259564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3259711_3260605_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3260804_3262499_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3262533_3263460_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3263528_3264626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3264644_3265508_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3265519_3266302_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3266298_3267417_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3267413_3268946_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3268986_3269994_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3270138_3270861_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3270876_3271899_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3272215_3272950_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3273034_3274780_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3274776_3275529_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3275573_3276530_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3276618_3277185_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3277192_3278053_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3278082_3278811_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3278842_3279526_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3280363_3281278_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3281342_3282251_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3282341_3283766_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3283767_3285090_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3285086_3287225_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3287302_3292423_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3292523_3292832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3292901_3293459_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3293474_3294956_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3295010_3296864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3297126_3298464_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3298498_3300496_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3300513_3302562_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3302692_3303559_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3303827_3304793_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3304907_3306056_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3306480_3306792_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3306825_3307086_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3307235_3308369_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3308439_3309576_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3309741_3310536_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3310598_3311042_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3311157_3312108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3312230_3312638_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3312710_3314906_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3315127_3316078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3316037_3316562_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3316693_3317665_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3317784_3320229_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3320244_3320835_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3321078_3322029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	3337475	3437588	4104353	tail,tRNA,transposase,terminase,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3337475_3338426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3339157_3339535_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3339519_3340221_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3340364_3341057_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3341056_3342160_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3342269_3344642_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3344638_3346198_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3346222_3347020_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3347051_3348197_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3348301_3349744_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3349746_3350976_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3353113_3354064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3355193_3355751_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3355726_3356077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3356245_3357040_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3357036_3358086_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3358085_3358775_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3358861_3359359_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3359390_3360707_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3360723_3361698_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3361734_3362193_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3362192_3362873_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3362875_3363304_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3363356_3365087_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3365152_3365725_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3365705_3366392_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3366747_3367419_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3367747_3367969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3367968_3368250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3368246_3368762_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3368761_3369313_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3369291_3369534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3369538_3370351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3370350_3370614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3370654_3370852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3370832_3371249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3371253_3375210_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3375202_3375592_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3375588_3376122_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3376189_3376549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3376558_3379171_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3379196_3379487_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3379504_3379834_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3379843_3380362_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3380616_3381117_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3381124_3381547_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3381543_3381942_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3381938_3382334_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3382333_3382522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3382535_3383018_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3383080_3383332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3384006_3384957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3385385_3385988_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3386110_3386353_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3386358_3387414_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3387442_3388861_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3388863_3390141_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3390127_3390613_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3391252_3392203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3392220_3392442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3392459_3393149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3393141_3393393_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3393947_3394559_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3394630_3394837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3395088_3396039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3396137_3397211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3397378_3398173_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3398212_3398737_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3398729_3400472_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3400681_3401440_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3401442_3402150_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3402166_3403048_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3403058_3403817_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3403785_3404541_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3404610_3406029_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3406050_3406701_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3406834_3407170_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3407258_3408209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3408285_3410106_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3410110_3411184_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3411306_3412275_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3412348_3413260_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3413278_3413851_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3413931_3414480_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3414479_3416069_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3416138_3416378_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3416418_3417444_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3417509_3418691_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3418787_3419240_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3419249_3420590_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3420906_3421944_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3422325_3422685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3422768_3423710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3423784_3424735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3425028_3426123_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3426213_3427086_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3427107_3427947_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3428022_3429540_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3429636_3430737_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3430753_3431176_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3431198_3431411_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3431457_3432378_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3432560_3433310_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3433312_3433642_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3433929_3435282_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3435293_3435677_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3435738_3436539_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3436637_3437588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	3598257	3653231	4104353	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3598257_3599208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3599324_3600392_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3600467_3603596_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3604103_3605069_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3605071_3605743_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3605899_3606859_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3606866_3607529_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3607525_3608476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3608597_3609851_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3609828_3610791_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3610922_3611417_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3611416_3612649_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3613394_3613676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3613662_3614649_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3614792_3615197_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3615338_3618725_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3618755_3620219_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3620227_3621856_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3621941_3622601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3622630_3623071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3623581_3623785_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3623960_3624866_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3624964_3625915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3626013_3626964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3628745_3629939_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3630004_3631033_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3631059_3632232_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3632357_3633335_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3633345_3634317_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3634383_3635169_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3635161_3636394_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3636589_3637345_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3637455_3637974_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3639762_3641163_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3641262_3641607_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3641695_3642166_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3642576_3642975_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3643106_3644057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3646501_3647236_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3647645_3647825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3648015_3649329_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3649344_3650856_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3650852_3652058_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3652253_3653231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	3743044	3858714	4104353	protease,transposase,tRNA	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3743044_3743995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3744117_3744846_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3744942_3746121_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3746117_3746951_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3746987_3747728_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3747847_3749023_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3749019_3749973_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3749986_3750388_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3750380_3750986_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3751073_3751238_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3751354_3752203_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3752199_3752853_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3752869_3754153_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3754392_3756018_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3756111_3756513_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3756537_3756972_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3756973_3758623_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3758663_3759833_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3759835_3760699_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3764062_3764767_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3764760_3765555_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3765551_3766517_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3766520_3767441_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3767537_3768701_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3768923_3769814_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3769817_3770321_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3770363_3771362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3771358_3772309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3772397_3772685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3772876_3773827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3773886_3774447_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3775949_3776831_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3776944_3778147_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3778275_3780135_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3780212_3781022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3781092_3782094_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3782125_3782986_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3783185_3784190_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3784186_3785773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3785781_3786708_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3786730_3787357_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3787455_3788406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3788402_3789539_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3789592_3790369_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3790393_3790852_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3790991_3791633_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3791697_3793080_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3793105_3793954_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3794112_3794724_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3794733_3795183_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3795849_3796011_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3796086_3796302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3796288_3797239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3798282_3798561_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3799703_3800252_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3800314_3801994_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3801990_3803742_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3803738_3803864_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3803877_3805032_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3805047_3806625_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3806750_3807296_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3807855_3808806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3809536_3810517_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3810530_3811655_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3811662_3813417_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3813523_3814423_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3814487_3815471_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3815606_3816587_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3816603_3817995_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3818146_3818683_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3818613_3819999_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3820141_3820780_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3820866_3822756_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3822752_3823694_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3823799_3824849_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3825101_3825803_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3825799_3826498_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3826498_3827854_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3827850_3828342_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3828360_3829317_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3830727_3832830_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3833000_3834044_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3834087_3834831_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3835852_3836263_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3837212_3838010_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3838108_3839059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3839055_3840006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3840092_3841043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3841157_3842159_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3842249_3842816_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3843134_3845048_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3845089_3846520_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3846632_3848045_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3848061_3848757_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3848975_3849926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3849950_3850850_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3851004_3851553_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3851591_3852311_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3852481_3855325_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3855918_3858714_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 26
NZ_CP011746	Bordetella pertussis strain I959 chromosome, complete genome	4104353	4003421	4068333	4104353	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4003421_4003907_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003995_4004133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004125_4005106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005372_4006182_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006221_4006902_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006895_4007354_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007365_4007728_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007810_4008494_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008549_4008858_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008876_4009191_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009187_4011662_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011669_4013061_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013057_4013243_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013221_4013923_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013919_4014741_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014721_4015846_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015838_4016858_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4017063_4017954_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018198_4018990_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019072_4019447_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019424_4020834_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020826_4022209_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022543_4024148_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024225_4025197_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025207_4026134_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026524_4027475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027644_4028871_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029070_4029937_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029929_4030892_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030992_4031943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032041_4032992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033090_4034041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034037_4035531_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035527_4038635_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038631_4041700_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041696_4042947_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043127_4043880_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043921_4044566_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044574_4045555_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045654_4046398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046480_4046828_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046925_4047768_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047812_4048700_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048726_4048915_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049012_4050470_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050456_4051983_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052001_4052469_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052468_4053491_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053611_4054352_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054406_4055507_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055508_4056699_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056818_4057835_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058153_4058825_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058821_4059730_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059941_4060589_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064449_4065517_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065527_4066337_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066426_4067200_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067200_4067365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067382_4068333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
