The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	27282	70036	4108598	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	232666	307010	4108598	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	489373	607268	4108598	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521675_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546690_547314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589300_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604906_606046_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	611682	675515	4108598	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	694426	771735	4108598	protease,tRNA,transposase,integrase	Bacillus_phage(20.0%)	58	741563:741581	761451:761469
WP_010929956.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708239_708671_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711406_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750160_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757280_758231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1018717	1120061	4108598	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1018717_1019833_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019933_1020752_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020849_1021461_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021620_1022997_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023059_1023518_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023602_1024298_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1024359_1024641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025203_1025956_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1026000_1027077_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027073_1028024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028126_1028789_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028883_1029054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029406_1030408_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030410_1031607_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031627_1032431_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1032511_1032808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032838_1033402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033442_1034300_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034307_1035057_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035078_1035951_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035979_1036759_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036792_1037590_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040244_1040637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040630_1041491_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041494_1042457_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043233_1043923_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044783_1045734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046083_1046953_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047023_1047719_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047708_1048218_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048214_1049435_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049382_1050285_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051171_1052458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052496_1053870_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053908_1054610_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054908_1055898_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055998_1056460_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056475_1057024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1057165_1058641_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058746_1059838_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059841_1060624_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060633_1061422_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062547_1062982_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062978_1063989_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064032_1064959_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065245_1065614_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1065830_1066781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066825_1069252_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069300_1069993_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070065_1071265_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071282_1072188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072303_1073233_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073258_1074605_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1074617_1075382_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1075395_1076178_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076370_1077321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077382_1078492_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079004_1079841_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1079967_1080876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080872_1081823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1082208_1082751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083786_1084737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084978_1085347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085392_1086517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1087651_1088392_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088495_1089116_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089219_1090170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090166_1092275_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092419_1093079_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093110_1093575_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093850_1094036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094087_1094840_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094846_1096109_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096150_1097389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098466_1099594_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099604_1100432_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100418_1101285_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102651_1103056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103418_1104330_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104344_1105055_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105051_1106296_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106297_1106732_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106760_1107066_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107164_1108115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1108171_1109320_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109400_1110351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110882_1111680_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111727_1112381_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112337_1113426_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113590_1115816_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118093_1118990_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1119110_1120061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1150447	1221418	4108598	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1150447_1151398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151454_1152567_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154950_1155901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156491_1157268_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157385_1157649_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157749_1158754_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158954_1160556_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160581_1161340_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161431_1162088_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162178_1162943_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162952_1163141_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163196_1164240_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164236_1164650_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164646_1165267_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165547_1166498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166665_1168057_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168129_1168708_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168824_1170222_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170337_1171543_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171642_1172161_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172255_1172501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172728_1173043_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1173141_1178322_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178318_1180487_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180542_1182858_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182862_1184182_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184200_1185874_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185878_1186547_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186703_1190525_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1190855_1191806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191827_1192973_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193121_1194051_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194047_1195136_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195132_1195936_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195932_1196664_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196721_1198011_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198107_1198710_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203263_1203602_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204309_1204576_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206282_1207233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207229_1208561_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209821_1211822_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211814_1212456_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212452_1212860_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212856_1213657_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213731_1214436_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214467_1215262_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215258_1216209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216307_1217258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217356_1217791_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217873_1220210_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220401_1221418_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1268812	1349687	4108598	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1268812_1269763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269759_1270710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270970_1271999_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272078_1273377_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273373_1273955_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274267_1278314_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278554_1286216_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286212_1287163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288302_1288776_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288915_1289536_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1289671_1290472_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290526_1291618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1291639_1292083_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292111_1292744_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292854_1293271_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293263_1293956_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294062_1294437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1294513_1295323_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295418_1296363_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296401_1297373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297463_1297901_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297959_1298841_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299844_1300705_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300737_1302120_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302116_1303136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303508_1304003_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304010_1304751_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304831_1306436_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306475_1307264_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1307389_1309555_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1310435_1311248_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311260_1311569_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311686_1313417_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1313418_1314621_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1314693_1315362_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315483_1315951_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316086_1317469_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317465_1318590_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318586_1321223_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321638_1322589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326335_1326947_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327169_1328630_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328726_1330319_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330672_1330930_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330931_1332272_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332367_1333057_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333069_1334500_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336224_1337046_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337056_1338628_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338656_1339634_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339660_1340464_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340460_1341255_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341262_1342498_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1342511_1342925_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343674_1344625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345246_1346974_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347085_1348444_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1348736_1349687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1434339	1490745	4108598	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010930208.1|1434339_1435290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1435292_1436246_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1436273_1437125_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1437130_1438159_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1438155_1439199_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1439266_1440292_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|1440573_1441827_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1441837_1442110_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1442106_1445046_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1445053_1445653_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1445653_1446502_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1446539_1447526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1447541_1448978_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1448990_1449782_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1450100_1451156_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1451192_1452002_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1452002_1452551_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1452701_1453121_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1453195_1454857_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1454872_1455772_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1455886_1456891_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1456948_1458037_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1458118_1458361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1458502_1459057_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1459064_1459445_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1459535_1461461_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1461561_1462695_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1462863_1465614_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1465946_1466321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1466358_1466901_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1466904_1468077_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1468098_1468986_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1469078_1470029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1470195_1470549_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470561_1470924_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470965_1471391_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471593_1472850_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473048_1474029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474178_1475420_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475518_1476469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476477_1477173_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479994_1480594_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480604_1482770_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482793_1484578_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484577_1484667_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485361_1485634_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485633_1487700_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929969.1|1487696_1488647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1488745_1489696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1489794_1490745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1566205	1634291	4108598	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1566205_1566694_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1566811_1567390_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1567495_1567864_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1567962_1568913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1568919_1570032_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1570718_1571921_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1572124_1574785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1574797_1578202_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1578869_1581095_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1581141_1581468_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1581518_1582127_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1582225_1583176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1583245_1584010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1584006_1584543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1584709_1585561_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1585620_1586247_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1586243_1587194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1587292_1588405_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1588394_1589396_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1589501_1591013_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1591009_1592314_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1592425_1592986_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1593253_1593808_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1594263_1594479_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1594733_1597331_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1597327_1598515_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1599173_1599788_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1599876_1600998_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1601015_1601921_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1602813_1603764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1603945_1604698_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1604766_1605426_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1605422_1606151_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1606163_1608443_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1608467_1608671_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1608712_1609345_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1609480_1610398_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1610394_1611108_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1611345_1612116_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1612120_1612720_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1612964_1614455_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1614513_1614798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1615363_1616290_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1616426_1617167_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1617333_1618710_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1618891_1619797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1621448_1623251_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1623368_1624019_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1624117_1625068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1625089_1626310_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1626495_1627908_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1627971_1629039_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1629038_1630526_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1630535_1631480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1631639_1632338_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1632415_1633321_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1633340_1634291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1670240	1725831	4108598	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1670240_1671191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1671249_1672023_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1672015_1673572_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1673568_1674519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1675845_1676448_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1676687_1677389_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1677382_1678165_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1678349_1679300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1679398_1680136_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1680325_1681084_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1681130_1682120_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1682297_1683266_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1684805_1685774_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1685782_1686724_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1687197_1688208_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1688198_1689713_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1689709_1691056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1691058_1692093_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1692142_1693768_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1694320_1695271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1695375_1696323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1696376_1698191_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1698183_1698858_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1698987_1702062_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1702075_1702375_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1702689_1703313_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1703556_1704426_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1704403_1705348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1705433_1706360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1706472_1707252_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1707242_1708439_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1708469_1709420_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1709641_1710331_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1710395_1711151_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1711202_1712195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1712204_1713158_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1713273_1714236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1715637_1716066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1716062_1717013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1717306_1718029_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1718467_1719655_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1719658_1720009_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1721758_1722730_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1722743_1723457_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1723461_1724379_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1724485_1724782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1724880_1725831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	1959645	2029297	4108598	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1959645_1962303_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1962380_1963583_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1963579_1964092_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1964214_1964652_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1964928_1965879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1965977_1966928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1967091_1968987_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1969100_1969268_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1969331_1969568_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1969936_1971088_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1972651_1973602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1974053_1975055_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1975227_1976085_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1976081_1977344_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1977444_1977819_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1977891_1979079_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1979163_1979934_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1980047_1980812_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1980762_1982064_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1982060_1982867_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1984611_1985583_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1985739_1986252_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1986410_1987385_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1988385_1989180_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1989205_1990012_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1990122_1990713_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1990723_1991902_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1992004_1992379_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1992631_1993963_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1994029_1997260_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1998750_1999497_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1999581_2000043_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2000080_2001139_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2001101_2002931_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2002970_2003543_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2004967_2005789_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2006107_2007430_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2007789_2008425_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2008384_2009335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2010205_2011078_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2011155_2012295_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2012653_2013910_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2013915_2014443_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2014447_2015266_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2015265_2015988_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2016009_2016324_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2016341_2017490_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2017520_2018396_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2018392_2019712_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2019784_2020981_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2020991_2022479_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2025073_2025973_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2026110_2027076_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2027174_2028125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2028346_2029297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2040793	2090189	4108598	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2040793_2041744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2042881_2043178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2043352_2044705_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2044847_2045864_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2047843_2048857_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2048943_2049849_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2050005_2050350_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2050507_2050966_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2050979_2053196_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2053192_2054254_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2054282_2055257_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2055208_2056027_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2056039_2056648_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2056822_2057218_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2057236_2058676_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2058704_2059052_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2059070_2060021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060673_2061624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2061707_2063525_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2063598_2064246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2064258_2065188_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2065357_2065822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2066069_2066750_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2066798_2068490_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2068505_2069057_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2069053_2069425_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2069537_2070374_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2070384_2070909_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2071006_2071186_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2071315_2072290_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2072420_2072777_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2072766_2073642_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2073740_2074625_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2074646_2075942_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2076890_2077541_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2077628_2079149_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2079406_2081272_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2082317_2083268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2083285_2083426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2084240_2084600_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2084587_2086024_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2086020_2086674_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2086670_2087864_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2087967_2089242_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2089238_2090189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2101393	2142084	4108598	protease,tRNA,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2101393_2102344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2102442_2103393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2103352_2103766_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2104050_2104350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2104759_2107042_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2107507_2107702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2107727_2109758_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2109777_2109990_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2110267_2110807_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2110920_2112216_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2112292_2113450_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2113633_2114533_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2114551_2115856_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2115821_2116928_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2117015_2117252_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2117390_2118461_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2118464_2119820_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2119846_2121004_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2121009_2121648_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2121649_2122945_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2122994_2124281_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2124296_2124803_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2124799_2125948_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2125975_2126401_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2126723_2129606_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2129698_2130454_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2131219_2132569_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2132667_2133618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2133716_2134667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2134740_2135214_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2135239_2136448_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2136444_2137218_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2137217_2137841_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2138006_2138267_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2138570_2139152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2139218_2139473_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2139459_2142084_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2169867	2235416	4108598	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2169867_2170818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2171018_2171828_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2171952_2172903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2172899_2173793_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2173917_2174112_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2174111_2174453_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2174462_2176325_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2176454_2176967_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2176969_2177293_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2177294_2177705_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2177742_2178954_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2178971_2179484_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2179699_2180191_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2180443_2182480_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2182557_2183760_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2183888_2184539_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2186096_2187047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2187617_2187830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2187847_2188579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2188613_2189255_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2189247_2189916_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2192128_2192905_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2192926_2194084_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2194080_2194512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2194508_2195306_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2195325_2195727_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2195793_2196765_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2196830_2198054_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2198281_2199232_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2199355_2201809_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2201997_2203302_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2203406_2204060_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2204062_2205373_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2205551_2206130_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2206241_2206442_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2206787_2207354_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2207437_2207641_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2207947_2208268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2208309_2208591_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2208665_2209922_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2210304_2210634_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2212204_2213026_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2213025_2214165_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2214171_2215068_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2215082_2216990_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2217349_2219962_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2220014_2222315_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2222311_2223520_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2223781_2224156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2224152_2225103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2225201_2227196_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2227255_2228221_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2228210_2231072_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2231074_2231581_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2231685_2232894_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2232895_2233834_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2233995_2234469_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2234465_2235416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2321593	2385171	4108598	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2321593_2322544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2322845_2323322_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2323945_2325583_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2325613_2326927_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2327060_2327378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2327478_2328801_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2328797_2329748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2329846_2330797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2331326_2332349_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2332377_2333208_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2333224_2334922_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2334986_2336063_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2336222_2337086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2337116_2337686_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2337702_2338554_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2339611_2340493_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2340567_2341557_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2341619_2342570_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2342632_2343490_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2343549_2344038_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2345610_2346801_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2346797_2348384_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2348402_2349470_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2349574_2351119_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2351538_2353113_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2353229_2354237_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2354233_2355073_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2355077_2356715_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2356711_2357662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2357804_2359079_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2359108_2359399_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2359471_2360485_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2360504_2361767_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2361769_2362693_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2362689_2364183_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2364193_2365126_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2365307_2366633_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2366667_2368023_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2368083_2369604_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2369758_2370490_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2370587_2371898_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2371913_2372825_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2372815_2373409_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2373470_2373857_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2373868_2374339_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2374350_2374974_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2374994_2377742_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2384220_2385171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2530112	2588356	4108598	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2530112_2531063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2531542_2532199_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2532213_2533881_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2533883_2534513_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2534724_2535819_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2535963_2536776_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2536779_2538363_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2538533_2539664_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2539850_2540927_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2541008_2541659_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2541673_2543077_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2543360_2544179_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2544175_2544880_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2545779_2546895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2546928_2547303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2547325_2548483_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2548495_2548729_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2549363_2552333_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2552347_2552557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2552708_2553338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2553334_2555392_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2555448_2556129_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2556125_2556686_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2556692_2557790_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2557942_2558536_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2558532_2559825_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2559838_2560381_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2560390_2561227_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2561260_2562322_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2562363_2563416_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2563431_2563734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2563875_2564826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2565004_2566699_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2566695_2567781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2567828_2568728_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2568738_2569383_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2570404_2573647_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2573657_2574812_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2575038_2576001_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2576099_2577050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2577148_2578099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2578108_2578798_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2578857_2579295_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2579340_2580234_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2580281_2581454_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2581450_2582605_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2582801_2583152_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2583141_2583576_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2583592_2584543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2584690_2585158_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2585138_2586296_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2586361_2587288_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2587405_2588356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2630635	2697135	4108598	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2630635_2631586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2631955_2632528_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2632530_2633541_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2633533_2634034_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2634044_2634386_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2634454_2635189_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2635205_2635475_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2635497_2636286_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2636332_2637349_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2637565_2639008_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2639186_2640806_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2640926_2642747_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2642825_2644358_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2644391_2646038_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2646107_2647130_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2647147_2648281_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2648283_2648973_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2648972_2649758_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2649801_2650566_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2650604_2652026_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2652091_2652796_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2652843_2653263_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2653275_2653683_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2653866_2654577_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2654703_2654994_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2655011_2655494_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2659999_2661154_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2661459_2662476_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2662722_2663511_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2663577_2664258_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2664254_2665025_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2665123_2666074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2666129_2667047_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2667057_2668236_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2668255_2669251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2670839_2671448_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2671435_2672476_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2672493_2673456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2673452_2674646_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2674642_2675440_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2675465_2676452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2676470_2678510_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2678711_2679392_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2679405_2680317_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2680313_2680892_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2681030_2681936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2681943_2685363_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2685350_2687951_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2688906_2689539_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2689932_2690691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2690687_2691890_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2692077_2693028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2693935_2695081_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2695067_2695823_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2695939_2696119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2696184_2697135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	2879538	3030244	4108598	holin,tRNA,transposase	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2879538_2880489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2880587_2881469_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2881546_2882926_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2882964_2883810_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2883825_2884140_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2884172_2884709_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2884881_2885457_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2885559_2886297_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2886364_2888002_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2888109_2888865_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2888852_2889815_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2889922_2890717_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2890778_2892854_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2893018_2895394_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2895474_2896830_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2898308_2899031_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2899085_2900069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2900198_2901149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2901145_2902048_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2902135_2902894_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2902906_2903998_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2904095_2905523_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2905752_2906967_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2907012_2909883_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2912293_2912782_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2912907_2915604_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2915758_2918041_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2918205_2918838_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2918936_2919887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2919933_2920488_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2920555_2921401_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2921470_2922439_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2922438_2924235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2926134_2930061_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2930796_2934027_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2934308_2935136_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2935169_2935865_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2935857_2937138_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2937147_2938125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2938106_2939807_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2939909_2941013_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2941043_2941799_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2941805_2943326_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2943368_2943671_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2943667_2944300_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2944378_2946244_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2946240_2947035_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2947063_2948179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2949083_2949962_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2949961_2950786_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2950953_2951904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2952116_2954966_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2954947_2955676_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2955816_2957280_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2957276_2957648_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2957665_2958979_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2959015_2959474_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2959586_2960537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2960533_2961547_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2961686_2962673_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2963031_2963739_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2964319_2965270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2965421_2966024_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2966042_2966675_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2966719_2966971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2966912_2968799_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2968817_2969660_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2969656_2971015_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2971235_2972030_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2972260_2973754_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2973989_2976071_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2976265_2977306_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2977440_2978457_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2978478_2979336_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2979380_2980157_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2980524_2981475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2981501_2981966_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2983172_2985461_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2985577_2986450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2986492_2987647_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2987681_2988512_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2988595_2990140_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2990182_2990542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2990543_2990957_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2990997_2991315_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2991399_2992116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2992379_2993801_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2996473_2997424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2997403_2997658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2997996_2999013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2999348_2999990_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3000080_3001517_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3001674_3002748_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3002744_3003881_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3004025_3004370_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3004436_3006317_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3006366_3007302_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3007634_3008651_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3009588_3011016_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3011012_3012035_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3012024_3012498_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3012638_3013526_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3013522_3015166_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3015162_3016170_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3017000_3018017_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3018116_3018749_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3018757_3019147_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3019199_3020252_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3021115_3021880_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3021953_3022454_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3022468_3024526_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3024552_3024846_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3024947_3025895_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3025907_3026783_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3026903_3027464_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3027498_3027822_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3028257_3028995_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3029293_3030244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	3051195	3191763	4108598	transposase	Bacillus_virus(11.11%)	114	NA	NA
WP_010929969.1|3051195_3052146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3052244_3053195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3053237_3054413_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3054634_3056425_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3056437_3058099_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3058111_3060817_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3061109_3062864_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3062860_3063487_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3063483_3064335_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3064464_3066525_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3066711_3067326_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3067471_3067723_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3067792_3069175_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3069171_3072351_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3073158_3074076_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3074127_3074859_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3074918_3075491_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3076999_3078016_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3078153_3079203_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3079307_3080258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3080353_3081079_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3081289_3081670_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3081975_3082848_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3082855_3083236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3083389_3084664_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3086151_3087060_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3087857_3088922_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3090758_3091793_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3091982_3092624_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3092706_3094533_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3094776_3095706_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3095705_3096455_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3096526_3097441_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3097460_3098606_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3098666_3099578_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3099658_3100609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3100707_3101292_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3101326_3102316_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3102312_3103254_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3103250_3104471_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3104513_3104828_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3105019_3105379_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3105380_3107096_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3107283_3107955_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3107969_3109298_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3109294_3110194_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3110280_3111366_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3111358_3112489_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3112491_3115173_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3115543_3116125_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3116250_3116976_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3116972_3117650_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3117865_3119047_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3119819_3120002_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3120031_3120982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3121111_3121504_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3121780_3122692_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3122816_3123791_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3123787_3124738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3124836_3125922_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3126019_3126430_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3127045_3128959_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3129094_3131707_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3131708_3132443_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3132606_3133788_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3133784_3133997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3133993_3134974_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3135019_3135847_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3135996_3137811_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3137865_3138249_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3138245_3139196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3139308_3139560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3139753_3139969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3140065_3141184_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3141303_3141516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3141675_3141897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3141949_3142900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3144076_3145447_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3145479_3146271_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3146283_3147339_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3147364_3148240_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3148345_3148594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3148628_3150083_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3150079_3150601_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3150629_3151982_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3152205_3155094_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3157238_3158540_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3158554_3159271_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3159552_3160233_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3160760_3161420_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3161818_3163651_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3163647_3164598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3165761_3167477_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3167487_3167979_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3168051_3169068_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3169235_3170015_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3170033_3170561_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3170559_3170766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3170854_3171124_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3171214_3173374_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3173494_3174214_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3174210_3175161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3175301_3176519_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3176512_3177124_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3177757_3178735_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3178878_3179625_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3179646_3180093_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3180880_3183112_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3183134_3183935_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3184216_3185449_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3185559_3186549_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3186579_3187968_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3189566_3190550_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3190746_3191763_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	3256221	3325224	4108598	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3256221_3257172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3257168_3258188_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3258197_3260906_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3261053_3261710_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3261808_3262759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3262906_3263800_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3263999_3265694_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3265728_3266655_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3266723_3267821_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3267839_3268703_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3268714_3269497_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3269493_3270612_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3270608_3272141_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3272181_3273189_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3273333_3274056_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3274071_3275094_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3275410_3276145_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3276229_3277975_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3277971_3278724_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3278768_3279725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3279813_3280380_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3280387_3281248_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3281277_3282006_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3282037_3282721_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3283558_3284473_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3284537_3285446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3285536_3286961_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3286962_3288285_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3288281_3290420_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3290497_3295618_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3295718_3296027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3296096_3296654_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3296669_3298151_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3298205_3300059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3300321_3301659_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3301693_3303691_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3303708_3305757_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3305887_3306754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3307022_3307988_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3308102_3309251_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3309675_3309987_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3310020_3310281_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3310430_3311564_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3311634_3312771_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3312936_3313731_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3313793_3314237_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3314352_3315303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3315425_3315833_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3315905_3318101_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318322_3319273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3319232_3319757_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3319888_3320860_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3320979_3323424_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3323439_3324030_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3324273_3325224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	3340670	3440783	4108598	transposase,protease,terminase,tail,tRNA	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3340670_3341621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3342352_3342730_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3342714_3343416_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3343559_3344252_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3344251_3345355_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3345464_3347837_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3347833_3349393_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3349417_3350215_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3350246_3351392_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3351496_3352939_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3352941_3354171_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3356308_3357259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3358388_3358946_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3358921_3359272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3359440_3360235_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3360231_3361281_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3361280_3361970_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3362056_3362554_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3362585_3363902_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3363918_3364893_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3364929_3365388_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3365387_3366068_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3366070_3366499_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3366551_3368282_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3368347_3368920_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3368900_3369587_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3369942_3370614_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3370942_3371164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3371163_3371445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3371441_3371957_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3371956_3372508_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3372486_3372729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3372733_3373546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3373545_3373809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3373849_3374047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3374027_3374444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3374448_3378405_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3378397_3378787_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3378783_3379317_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3379384_3379744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3379753_3382366_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3382391_3382682_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3382699_3383029_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3383038_3383557_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3383811_3384312_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3384319_3384742_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3384738_3385137_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3385133_3385529_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3385528_3385717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3385730_3386213_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3386275_3386527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3387201_3388152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3388580_3389183_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3389305_3389548_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3389553_3390609_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3390637_3392056_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3392058_3393336_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3393322_3393808_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3394447_3395398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3395654_3396344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3396336_3396588_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3397142_3397754_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3397825_3398032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3398283_3399234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3399332_3400406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3400573_3401368_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3401407_3401932_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3401924_3403667_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3403876_3404635_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3404637_3405345_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3405361_3406243_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3406253_3407012_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3406980_3407736_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3407805_3409224_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3409245_3409896_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3410029_3410365_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3410453_3411404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3411480_3413301_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3413305_3414379_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3414501_3415470_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3415543_3416455_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3416473_3417046_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3417126_3417675_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3417674_3419264_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3419333_3419573_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3419613_3420639_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3420704_3421886_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3421982_3422435_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3422444_3423785_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3424101_3425139_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3425520_3425880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3425963_3426905_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3426979_3427930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3428223_3429318_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3429408_3430281_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3430302_3431142_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3431217_3432735_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3432831_3433932_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3433948_3434371_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3434393_3434606_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3434652_3435573_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3435755_3436505_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3436507_3436837_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3437124_3438477_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3438488_3438872_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3438933_3439734_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3439832_3440783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	3601452	3656426	4108598	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3601452_3602403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3602519_3603587_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3603662_3606791_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3607298_3608264_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3608266_3608938_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3609094_3610054_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3610061_3610724_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3610720_3611671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3611792_3613046_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3613023_3613986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3614117_3614612_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3614611_3615844_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3616589_3616871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3616857_3617844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3617987_3618392_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3618533_3621920_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3621950_3623414_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3623422_3625051_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3625136_3625796_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3625825_3626266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3626776_3626980_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3627155_3628061_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3628159_3629110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3629208_3630159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3631940_3633134_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3633199_3634228_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3634254_3635427_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3635552_3636530_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3636540_3637512_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3637578_3638364_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3638356_3639589_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3639784_3640540_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3640650_3641169_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3642957_3644358_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3644457_3644802_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3644890_3645361_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3645771_3646170_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3646301_3647252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3649696_3650431_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3650840_3651020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3651210_3652524_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3652539_3654051_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3654047_3655253_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3655448_3656426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	3746239	3862958	4108598	protease,tRNA,transposase	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3746239_3747190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747312_3748041_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748137_3749316_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749312_3750146_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750182_3750923_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751042_3752218_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752214_3753168_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753181_3753583_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753575_3754181_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754268_3754433_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754549_3755398_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755394_3756048_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756064_3757348_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757587_3759213_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759306_3759708_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3759732_3760167_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760168_3761818_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3761858_3763028_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3763030_3763894_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767257_3767962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3767955_3768750_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3768746_3769712_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3769715_3770636_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3770732_3771896_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772118_3773009_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773012_3773516_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773558_3774557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774553_3775504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775592_3775880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776071_3777022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777081_3777642_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779144_3780026_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780139_3781342_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781470_3783330_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783407_3784217_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784287_3785289_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785320_3786181_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786380_3787385_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787381_3788968_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3788976_3789903_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3789925_3790552_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3790650_3791601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791597_3792734_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3792787_3793564_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793588_3794047_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794186_3794828_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_005013747.1|3796243_3797194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929720.1|3797349_3798198_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3798356_3798968_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3798977_3799427_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3800093_3800255_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3800330_3800546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3800532_3801483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3802526_3802805_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3803947_3804496_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3804558_3806238_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3806234_3807986_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3807982_3808108_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3808121_3809276_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3809291_3810869_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3810994_3811540_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3812099_3813050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3813780_3814761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3814774_3815899_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3815906_3817661_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3817767_3818667_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3818731_3819715_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3819850_3820831_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3820847_3822239_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3822390_3822927_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3822857_3824243_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3824385_3825024_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3825110_3827000_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3826996_3827938_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3828043_3829093_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3829345_3830047_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3830043_3830742_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3830742_3832098_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3832094_3832586_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3832604_3833561_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3834971_3837074_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3837244_3838288_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3838331_3839075_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3840096_3840507_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3841456_3842254_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3842352_3843303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3843299_3844250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3844336_3845287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3845401_3846403_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3846493_3847060_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3847378_3849292_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3849333_3850764_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3850876_3852289_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3852305_3853001_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3853219_3854170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3854194_3855094_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3855248_3855797_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3855835_3856555_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3856725_3859569_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3860162_3862958_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 27
NZ_CP011747	Bordetella pertussis strain I965 chromosome, complete genome	4108598	4007666	4072578	4108598	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007666_4008152_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008240_4008378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008370_4009351_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009617_4010427_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010466_4011147_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011140_4011599_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011610_4011973_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012055_4012739_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012794_4013103_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013121_4013436_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013432_4015907_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015914_4017306_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017302_4017488_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017466_4018168_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018164_4018986_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018966_4020091_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4020083_4021103_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021308_4022199_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022443_4023235_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023317_4023692_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023669_4025079_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4025071_4026454_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026788_4028393_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028470_4029442_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029452_4030379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030769_4031720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031889_4033116_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033315_4034182_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034174_4035137_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035237_4036188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036286_4037237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037335_4038286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038282_4039776_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039772_4042880_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042876_4045945_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045941_4047192_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047372_4048125_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048166_4048811_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048819_4049800_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049899_4050643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050725_4051073_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051170_4052013_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052057_4052945_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052971_4053160_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053257_4054715_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054701_4056228_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056246_4056714_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056713_4057736_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057856_4058597_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058651_4059752_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059753_4060944_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061063_4062080_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062398_4063070_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063066_4063975_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064186_4064834_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068694_4069762_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069772_4070582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070671_4071445_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071627_4072578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
