The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	27282	70036	4106673	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	77634	136108	4106673	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	164892	225403	4106673	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	233336	286924	4106673	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	390857	448366	4106673	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	589371	650560	4106673	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592703_593195_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593213_594287_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594333_595437_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595512_596133_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596153_596663_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596717_596969_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597032_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619569_619734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622978_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638046_639399_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646242_647115_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	655884	702075	4106673	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665119_666070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668787_669543_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672856_674599_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677289_678240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678491_678698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678769_679381_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679935_680187_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680179_680869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680886_681108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681125_682076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682715_683201_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683187_684465_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688371_689322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690806_690995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691781_692204_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692966_693485_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693494_693824_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693841_694132_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697206_697740_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697736_698126_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	708241	762170	4106673	tRNA,transposase	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|712620_713937_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713968_714466_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714552_715242_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715241_716291_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716287_717082_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717250_717601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717576_718134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719263_720214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722351_723581_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723583_725026_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725130_726276_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726307_727105_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727129_728689_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728685_731058_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731167_732271_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732270_732963_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733106_733808_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733792_734170_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734901_735852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736011_736884_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737224_737443_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737482_738862_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738903_740301_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740340_741993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741996_742881_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742880_743822_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743900_745520_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745686_746502_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746569_747139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747139_748090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748744_749842_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749875_751141_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|751298_752249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752492_753083_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753098_755543_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755662_756634_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756765_757290_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757249_758200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758421_760617_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760689_761097_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761219_762170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	884759	952735	4106673	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884759_885776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885972_886956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888554_889943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889973_890963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891073_892306_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892587_893388_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893410_895642_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896429_896876_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896897_897644_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897787_898765_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899398_900010_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900003_901221_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901361_902312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902308_903028_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903148_905308_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905398_905668_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905756_905963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905961_906489_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906507_907287_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907454_908471_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908543_909035_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909045_910761_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911924_912875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912871_914704_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915102_915762_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916289_916970_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917251_917968_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917982_919284_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921428_924317_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924540_925893_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925921_926443_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926439_927894_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927928_928177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928282_929158_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929183_930239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930251_931043_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931075_932446_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933622_934573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934625_934847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935006_935219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935338_936457_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936553_936769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936962_937214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077082435.1|937326_938277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938273_938657_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938711_940526_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940675_941503_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941548_942529_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942525_942738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942734_943916_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944079_944814_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944815_947428_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947563_949477_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950092_950503_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950600_951686_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951784_952735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	975913	1047229	4106673	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|975913_976864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976944_977856_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977916_979062_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979081_979996_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980067_980817_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980816_981746_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981989_983816_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983898_984540_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|984729_985764_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987600_988665_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989462_990371_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991858_993133_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993286_993667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993674_994547_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994852_995233_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995443_996169_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996264_997215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997319_998369_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998506_999523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001031_1001604_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001663_1002395_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002446_1003364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004171_1007351_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007347_1008730_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008799_1009051_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009196_1009811_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009997_1012058_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012187_1013039_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013035_1013662_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013658_1015413_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015705_1018411_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018423_1020085_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020097_1021888_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022109_1023285_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023327_1024278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024376_1025117_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025311_1027348_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027365_1028376_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028493_1029687_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029716_1030490_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030486_1031677_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031702_1032641_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032637_1034986_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035140_1035782_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037111_1037264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037295_1037844_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037862_1038348_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038525_1039464_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039466_1039784_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039829_1040774_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042454_1043105_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043158_1043494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043490_1044351_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044367_1044649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044722_1044986_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045229_1046180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1046278_1047229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1059447	1197158	4106673	holin,tRNA,transposase	uncultured_Mediterranean_phage(17.65%)	107	NA	NA
WP_010931363.1|1059447_1060464_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061294_1062302_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062298_1063942_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063938_1064826_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064966_1065440_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065429_1066452_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066448_1067876_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068813_1069830_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070162_1071098_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071147_1073028_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073094_1073439_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073583_1074720_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074716_1075790_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075947_1077384_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077474_1078116_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1078451_1079468_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1079567_1080143_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1080081_1082829_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082895_1084317_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084580_1085297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085381_1085699_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085739_1086153_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086154_1086514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086556_1088101_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088184_1089015_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089049_1090204_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1090246_1091119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091235_1093524_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094730_1095195_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095221_1096172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096189_1096327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096539_1097316_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097360_1098218_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098239_1099256_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099390_1100431_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100625_1102707_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102942_1104436_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104666_1105461_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105681_1107040_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107036_1107879_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107897_1109784_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109725_1109977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110021_1110654_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110672_1111275_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111426_1112377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112957_1113665_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114023_1115010_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115149_1116163_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116159_1117110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117127_1117268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117222_1117681_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117717_1119031_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119048_1119420_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119416_1120880_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121020_1121749_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121730_1124580_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124792_1125743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125910_1126735_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126734_1127613_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128517_1129633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129661_1130456_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130452_1132318_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132396_1133029_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133025_1133328_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133370_1134891_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1134897_1135653_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1135682_1136787_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1136889_1138590_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1138571_1139549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1139558_1140839_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1140831_1141527_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1141560_1142388_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1142669_1145900_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1146635_1150562_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1152461_1154258_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1154257_1155226_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155295_1156141_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156208_1156763_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156809_1157760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157858_1158491_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158655_1160938_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161092_1163789_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163914_1164403_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166813_1169684_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169729_1170944_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171173_1172601_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172698_1173790_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173802_1174561_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174648_1175551_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175547_1176498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176627_1177611_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177665_1178388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179866_1181222_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181302_1183678_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183842_1185918_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185979_1186774_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186881_1187844_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187831_1188587_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188694_1190332_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190399_1191137_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191239_1191815_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191987_1192524_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192556_1192871_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192886_1193732_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193770_1195150_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195227_1196109_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196207_1197158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1317181	1385668	4106673	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317181_1318132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318900_1319539_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320428_1320875_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320956_1321658_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321658_1322426_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322422_1323661_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323660_1324587_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324689_1325805_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325820_1326771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327124_1327706_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327702_1328536_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328746_1330060_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1330236_1331118_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331137_1331989_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332041_1333130_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1333240_1334368_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334602_1335214_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335312_1336263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336484_1336862_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337009_1337507_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337503_1338031_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338164_1338980_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338992_1340174_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340221_1341115_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1341241_1341712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341837_1342665_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342693_1343470_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343466_1343742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343756_1344221_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1344232_1344934_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345043_1345544_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345626_1346805_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348432_1348768_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348955_1350404_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350461_1350806_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350912_1351452_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351544_1352495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1352512_1352752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353233_1353665_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353846_1354251_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355487_1355811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355813_1356701_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356733_1357159_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357230_1357584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357823_1358330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358368_1359700_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359759_1360575_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360571_1361426_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364488_1367032_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368398_1370153_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370149_1372270_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372274_1374470_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374466_1377808_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380610_1381561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381626_1381806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381922_1382678_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382664_1383810_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384717_1385668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1446159	1501646	4106673	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446159_1447110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448311_1448758_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448750_1450226_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450222_1450978_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450970_1451981_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451970_1453647_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453959_1454292_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454305_1454701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454710_1455037_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455033_1455360_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1455286_1455700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456304_1456655_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456702_1457131_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457138_1458512_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458652_1459030_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459292_1460600_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460660_1461491_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461487_1461976_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462017_1463538_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463581_1464058_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464861_1467459_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467488_1468310_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469036_1469786_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469969_1470848_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470945_1471662_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471676_1472237_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472403_1473168_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473187_1474045_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474041_1475241_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475280_1476615_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476667_1479004_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479129_1479693_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479701_1480793_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480864_1481320_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481320_1482115_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482111_1483293_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483279_1483885_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483881_1484655_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484666_1485494_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485655_1488019_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488086_1488806_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488929_1489355_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489389_1490340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490457_1491384_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491449_1492607_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492587_1493055_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493202_1494153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494169_1494604_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494593_1494944_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495140_1496295_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496291_1497464_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497511_1498405_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498450_1498888_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498947_1499637_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499646_1500597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500695_1501646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1596343	1664430	4106673	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1596343_1596832_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1596949_1597528_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1597633_1598002_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598100_1599051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599057_1600170_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600856_1602059_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1602262_1604923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1604935_1608340_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609007_1611233_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1611279_1611606_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611656_1612265_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612363_1613314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613383_1614148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1614144_1614681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1614847_1615699_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615758_1616385_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616381_1617332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1617430_1618543_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618532_1619534_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619639_1621151_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621147_1622452_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622563_1623124_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623391_1623946_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624401_1624617_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624871_1627469_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627465_1628653_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1629312_1629927_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1630015_1631137_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631154_1632060_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1632952_1633903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634084_1634837_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634905_1635565_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635561_1636290_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636302_1638582_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638606_1638810_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1638851_1639484_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1639619_1640537_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1640533_1641247_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641484_1642255_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1642259_1642859_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643103_1644594_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644652_1644937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1645502_1646429_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646565_1647306_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647472_1648849_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649030_1649936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651587_1653390_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1653507_1654158_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1654256_1655207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1655228_1656449_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656634_1658047_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658110_1659178_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659177_1660665_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660674_1661619_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661778_1662477_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662554_1663460_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663479_1664430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1700379	1755970	4106673	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1700379_1701330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701388_1702162_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702154_1703711_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703707_1704658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1705984_1706587_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706826_1707528_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707521_1708304_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708488_1709439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1709537_1710275_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710464_1711223_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1711269_1712259_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712436_1713405_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714944_1715913_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715921_1716863_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717336_1718347_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718337_1719852_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719848_1721195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1721197_1722232_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1722281_1723907_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724459_1725410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725514_1726462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726515_1728330_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728322_1728997_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729126_1732201_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732214_1732514_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732828_1733452_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1733695_1734565_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734542_1735487_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1735572_1736499_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1736611_1737391_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737381_1738578_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738608_1739559_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739780_1740470_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740534_1741290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741341_1742334_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742343_1743297_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743412_1744375_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745776_1746205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746201_1747152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1747445_1748168_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748606_1749794_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1749797_1750148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751897_1752869_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752882_1753596_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753600_1754518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754624_1754921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755019_1755970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	1988734	2058386	4106673	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1988734_1991392_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1991469_1992672_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1992668_1993181_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1993303_1993741_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994017_1994968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995066_1996017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1996180_1998076_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1998189_1998357_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1998420_1998657_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1999025_2000177_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2001740_2002691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003142_2004144_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2004316_2005174_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005170_2006433_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2006533_2006908_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2006980_2008168_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2008252_2009023_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009136_2009901_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2009851_2011153_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2011149_2011956_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2013700_2014672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2014828_2015341_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2015499_2016474_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2017474_2018269_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2018294_2019101_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019211_2019802_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2019812_2020991_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021093_2021468_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2021720_2023052_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023118_2026349_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2027839_2028586_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2028670_2029132_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029169_2030228_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030190_2032020_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032059_2032632_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034056_2034878_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035196_2036519_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2036878_2037514_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2037473_2038424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2039294_2040167_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2040244_2041384_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2041742_2042999_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043004_2043532_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2043536_2044355_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2044354_2045077_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045098_2045413_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2045430_2046579_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2046609_2047485_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2047481_2048801_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2048873_2050070_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050080_2051568_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_062826582.1|2054162_2055062_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055199_2056165_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2056263_2057214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2057435_2058386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2069882	2119278	4106673	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2069882_2070833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2071970_2072267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2072441_2073794_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2073936_2074953_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2076932_2077946_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2078032_2078938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079094_2079439_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2079596_2080055_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080068_2082285_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2082281_2083343_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2083371_2084346_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2084297_2085116_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085128_2085737_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2085911_2086307_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2086325_2087765_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2087793_2088141_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088159_2089110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2089762_2090713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2090796_2092614_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2092687_2093335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2093347_2094277_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2094446_2094911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095158_2095839_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2095887_2097579_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2097594_2098146_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098142_2098514_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2098626_2099463_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2099473_2099998_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100095_2100275_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2100404_2101379_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2101509_2101866_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2101855_2102731_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2102829_2103714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2103735_2105031_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2105979_2106630_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2106717_2108238_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2108495_2110361_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2111406_2112357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2112374_2112515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2113329_2113689_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2113676_2115113_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115109_2115763_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2115759_2116953_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117056_2118331_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2118327_2119278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2130482	2183966	4106673	tRNA,protease,transposase	Klosneuvirus(22.22%)	46	NA	NA
WP_005013747.1|2130482_2131433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2131531_2132482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2132441_2132855_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2133139_2133439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2133848_2136131_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2136596_2136791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2136816_2138847_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2138866_2139079_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2139356_2139896_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2140009_2141305_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2141381_2142539_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2142722_2143622_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2143640_2144945_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2144910_2146017_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2146104_2146341_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2146479_2147550_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2147553_2148909_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2148935_2150093_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2150098_2150737_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2150738_2152034_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2152083_2153370_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2153385_2153892_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2153888_2155037_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2155064_2155490_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2155812_2158695_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2158787_2159543_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2160308_2161658_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2161756_2162707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2162805_2163756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2163829_2164303_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2164328_2165537_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2165533_2166307_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2166306_2166930_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2167095_2167356_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2167659_2168241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2168307_2168562_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2168548_2171173_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2171244_2172063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2172059_2172665_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2172702_2173836_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2175551_2175926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2176023_2177298_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2177301_2178879_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2179785_2181141_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2181137_2182772_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_005012067.1|2183015_2183966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2200005	2265554	4106673	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2200005_2200956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201156_2201966_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2202090_2203041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203037_2203931_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204055_2204250_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2204249_2204591_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2204600_2206463_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2206592_2207105_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207107_2207431_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2207432_2207843_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2207880_2209092_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209109_2209622_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2209837_2210329_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2210581_2212618_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2212695_2213898_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214026_2214677_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2216234_2217185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2217755_2217968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2217985_2218717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2218751_2219393_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2219385_2220054_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2222266_2223043_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223064_2224222_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224218_2224650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2224646_2225444_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2225463_2225865_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2225931_2226903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2226968_2228192_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2228419_2229370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2229493_2231947_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232135_2233440_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2233544_2234198_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234200_2235511_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2235689_2236268_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2236379_2236580_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2236925_2237492_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2237575_2237779_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238085_2238406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2238447_2238729_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2238803_2240060_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2240442_2240772_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2242342_2243164_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243163_2244303_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2244309_2245206_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2245220_2247128_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2247487_2250100_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250152_2252453_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2252449_2253658_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2253919_2254294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2254290_2255241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2255339_2257334_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2257393_2258359_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2258348_2261210_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261212_2261719_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2261823_2263032_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263033_2263972_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264133_2264607_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2264603_2265554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2685195	2725863	4106673	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2685195_2686146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2686256_2686439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686538_2687135_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687318_2688410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688909_2689320_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689378_2689708_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689725_2692143_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2692155_2693178_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2693252_2693612_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693627_2693825_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2694160_2695111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695305_2695755_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695751_2696702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696812_2698261_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698375_2698621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698760_2699711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699955_2700669_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700791_2701019_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701313_2701952_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2702060_2703095_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2703091_2704042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704457_2704982_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704985_2705255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705453_2706515_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706598_2708233_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2708234_2709038_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2709066_2710026_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2710029_2711544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711580_2712585_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2712592_2712826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2713015_2713486_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713521_2714133_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2714163_2714787_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714867_2716400_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716434_2717652_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717719_2718751_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718747_2719917_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719910_2720591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720752_2721595_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721757_2722729_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722900_2723779_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723801_2724872_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724912_2725863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2781328	2854198	4106673	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781328_2781745_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781855_2782488_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782516_2782960_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782981_2784073_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2784127_2784928_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2785063_2785684_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785823_2786297_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787436_2788387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788383_2796045_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796285_2800332_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800644_2801226_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2801222_2802521_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802600_2803629_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803889_2804840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804836_2805787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806103_2806709_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806762_2808076_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808150_2808621_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808620_2809409_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809419_2811072_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811159_2812110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2813271_2813778_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813774_2814539_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814554_2814839_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814903_2815893_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816064_2816994_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816965_2817652_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817685_2818231_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818275_2819541_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819537_2820440_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821621_2822566_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822660_2824178_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824219_2825848_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825955_2826837_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829949_2830324_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830348_2830687_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830730_2832365_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832403_2833750_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833857_2835279_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835348_2835933_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836035_2836986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837120_2838227_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838237_2839335_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839479_2840685_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840691_2841213_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2841209_2841692_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841697_2841949_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841929_2842415_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842550_2846012_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846029_2846914_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846923_2847355_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847601_2848105_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848182_2849583_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849657_2850533_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850529_2851537_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852004_2852310_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852400_2852991_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853181_2854198_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2857341	2924152	4106673	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2857341_2858292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858390_2859341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859337_2860132_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860163_2860868_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860942_2861743_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861739_2862147_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862143_2862785_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862777_2864778_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866038_2867370_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867366_2868317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870023_2870290_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870997_2871336_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875889_2876492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876588_2877878_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877935_2878667_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878663_2879467_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879463_2880552_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880548_2881478_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881626_2882772_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882793_2883744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883761_2883920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2884074_2887896_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888052_2888721_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888725_2890399_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890417_2891737_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891741_2894057_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894112_2896281_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896277_2901458_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901556_2901871_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902098_2902344_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902438_2902957_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903056_2904262_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904377_2905775_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905891_2906470_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906542_2907934_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908101_2909052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909332_2909953_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909949_2910363_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910359_2911403_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911458_2911647_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911656_2912421_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912511_2913168_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913259_2914018_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914043_2915645_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915845_2916850_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916950_2917214_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917331_2918108_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918698_2919649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922032_2923145_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923201_2924152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	2954537	2993726	4106673	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2954537_2955488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955505_2955655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955608_2956505_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958782_2961008_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961172_2962261_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962217_2962871_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962918_2963716_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2964247_2965198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965278_2966427_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966483_2967434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967532_2967838_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967866_2968301_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968302_2969547_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969543_2970254_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970268_2971180_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971542_2971947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971943_2972402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972408_2973317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973313_2974180_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974166_2974994_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975004_2976132_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977209_2978448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978489_2979752_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979758_2980511_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980562_2980748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981023_2981488_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981519_2982179_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982323_2984432_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984428_2985379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985482_2986103_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2986206_2986947_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988081_2989206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989251_2989620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989861_2990812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991847_2992390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992587_2992758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992775_2993726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	3379223	3432964	4106673	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379223_3380174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3380578_3381223_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3381247_3381832_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3381932_3382550_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3382552_3384268_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3384264_3384573_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3384589_3385207_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3385251_3385554_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3385654_3386509_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3386696_3386921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387090_3387363_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3387780_3388188_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3388557_3389352_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3389452_3390688_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3390756_3391773_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3391784_3393161_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393157_3394354_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3394350_3395889_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3395885_3397145_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399085_3400036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400802_3401897_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401889_3403224_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403177_3403861_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403886_3405050_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3405046_3406048_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406047_3406920_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406916_3407666_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407662_3408454_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3408450_3409590_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409865_3410651_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410684_3411467_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3411470_3411860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3412999_3413863_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3413898_3414987_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414983_3415934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3416287_3419266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420192_3421071_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423019_3423970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423966_3424434_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3424476_3425247_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3425267_3426068_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426078_3427488_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3427582_3428368_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3428607_3429624_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429731_3430124_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3430261_3430942_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430946_3431918_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432013_3432964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	3439119	3498419	4106673	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439119_3440883_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3440994_3441873_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441985_3442801_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442804_3443056_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443140_3444157_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3444487_3444709_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447069_3447987_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3448484_3449693_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3449772_3451344_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3451461_3452397_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3452585_3453530_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454097_3459815_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3459820_3460948_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461003_3461630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3461901_3462918_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463013_3463724_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463720_3464710_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464805_3466437_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3466439_3467177_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3467332_3468205_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3468554_3469694_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469690_3470350_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3470421_3471054_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471083_3471602_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3471612_3472722_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472768_3473623_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3473624_3474527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3475749_3476700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3478456_3479446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3479621_3480410_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3480406_3481438_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3481456_3482020_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482075_3483596_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483859_3484564_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3484571_3485300_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3485414_3485789_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485831_3487121_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487117_3488287_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3488283_3489123_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489182_3490118_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490130_3491081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491179_3492142_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492173_3492533_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492657_3493560_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3493561_3495334_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3495368_3496145_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3497468_3498419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	3513357	3572479	4106673	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3513357_3514308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3514436_3515570_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3515613_3516519_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3516521_3518222_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518218_3519139_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519146_3520124_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520182_3521217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523191_3523428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3523554_3524418_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3524506_3525328_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3525407_3526145_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526141_3527134_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3527286_3527910_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3527954_3529103_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3531426_3532377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3532717_3533668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533766_3534717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535013_3535511_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3535553_3537329_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3537336_3538203_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538209_3538944_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540113_3540908_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541197_3541788_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541821_3543150_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543224_3544370_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3544481_3545480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3545442_3545877_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3547393_3548278_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3548274_3549480_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3549476_3550337_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3550449_3552240_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3552280_3552925_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3552946_3553255_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3553420_3554707_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3556140_3557091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3557189_3558140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560091_3561306_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561411_3562401_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562397_3563006_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563018_3563648_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563644_3564265_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564296_3565088_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565939_3566395_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566413_3567340_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567393_3568680_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569610_3570483_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570479_3571430_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571528_3572479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011754	Bordetella pertussis strain J021 chromosome, complete genome	4106673	4005741	4070653	4106673	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005741_4006227_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006315_4006453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006445_4007426_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007692_4008502_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008541_4009222_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009215_4009674_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009685_4010048_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010130_4010814_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010869_4011178_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011196_4011511_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011507_4013982_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013989_4015381_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015377_4015563_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015541_4016243_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016239_4017061_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017041_4018166_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018158_4019178_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019383_4020274_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020518_4021310_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021392_4021767_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021744_4023154_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023146_4024529_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024863_4026468_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026545_4027517_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027527_4028454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028844_4029795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029964_4031191_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031390_4032257_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032249_4033212_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033312_4034263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034361_4035312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035410_4036361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036357_4037851_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037847_4040955_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040951_4044020_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044016_4045267_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045447_4046200_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046241_4046886_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046894_4047875_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047974_4048718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048800_4049148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049245_4050088_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050132_4051020_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051046_4051235_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051332_4052790_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052776_4054303_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054321_4054789_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054788_4055811_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055931_4056672_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056726_4057827_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057828_4059019_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059138_4060155_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060473_4061145_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061141_4062050_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062261_4062909_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066769_4067837_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067847_4068657_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068746_4069520_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069520_4069685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069702_4070653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
