The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	27282	70036	4106384	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	77634	136108	4106384	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	164893	225404	4106384	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	233336	286924	4106384	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_181902617.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	390857	448366	4106384	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	589371	650562	4106384	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590818_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619571_619736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622998_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638048_639482_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646244_647126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	655886	702077	4106384	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680888_681110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	708243	762173	4106384	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736014_736887_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737227_737446_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737485_738865_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738906_740304_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740343_741996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741999_742884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742883_743825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743903_745523_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745689_746505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746572_747142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747142_748093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749878_751144_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751301_752252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755665_756637_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756768_757293_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757252_758203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758424_760620_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760692_761121_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761222_762173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	853051	957543	4106384	transposase,holin	Bacillus_phage(20.0%)	88	NA	NA
WP_010929591.1|853051_854002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854019_854574_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854575_855010_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855006_855441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855424_856228_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856244_857060_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857056_857872_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858018_858720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858747_860706_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860788_861739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861959_862628_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862751_863858_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863870_866984_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866980_868474_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868488_869160_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869203_869698_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869838_870486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870589_872638_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872634_874647_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874672_876007_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876115_877108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877174_879259_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879283_880255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880383_881415_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881418_882570_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882740_883664_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883741_884566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884762_885779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885975_886959_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888557_889946_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889976_890966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891076_892309_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892590_893391_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893413_895645_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901364_902315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	976965	1047232	4106384	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985814_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1059450	1117881	4106384	tRNA,transposase,protease,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061255_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081513_1082464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1157580	1219751	4106384	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158629_1159253_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159426_1161709_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161863_1164560_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164685_1165174_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167584_1170455_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170500_1171715_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171944_1173372_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173469_1174561_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174573_1175332_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175419_1176322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176318_1177269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177398_1178382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178436_1179159_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180637_1181993_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182073_1184449_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184613_1186689_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186750_1187551_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187652_1188615_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188602_1189358_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189465_1191103_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191170_1191908_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192010_1192586_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192758_1193295_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193297_1193642_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193657_1194503_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194541_1195921_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195998_1196880_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196978_1197929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197925_1198336_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198443_1199298_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199290_1200253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200298_1201423_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201528_1202407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202531_1203311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203464_1204886_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205320_1207018_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207244_1208186_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208512_1209259_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209266_1210193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210314_1211232_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211271_1212225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212249_1212828_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214501_1215110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215187_1215541_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215624_1216614_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216610_1216799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216816_1217767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217853_1218804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218800_1219751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1270679	1327890	4106384	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270679_1271630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275376_1275988_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276210_1277671_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277767_1279360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279713_1279971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279972_1281313_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281408_1282098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282110_1283541_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285265_1286087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286097_1287669_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287697_1288675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288701_1289505_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289501_1290296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290303_1291539_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291531_1291966_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292715_1293666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294287_1296015_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296126_1297485_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297541_1297760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297777_1298728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298768_1299839_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299861_1300740_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300911_1301883_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302045_1302888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303049_1303730_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303723_1304893_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304889_1305921_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305964_1307206_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307240_1308773_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308853_1309477_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309507_1310119_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310154_1310625_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311056_1312061_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312097_1313612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313615_1314575_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314603_1315407_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315408_1317043_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317126_1318188_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318386_1318656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318659_1319184_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319599_1320550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320546_1321581_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321689_1322328_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322622_1322850_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322972_1323686_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323930_1324881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324984_1325266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325380_1326829_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326939_1327890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1418123	1470276	4106384	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418123_1419074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419091_1419244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419240_1419594_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419606_1419969_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420010_1420436_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420638_1421895_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422093_1423074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423223_1424465_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424563_1425514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425522_1426218_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429039_1429639_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429649_1431815_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431838_1433623_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433622_1433712_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434406_1434679_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434678_1436745_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437790_1438741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438856_1439189_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439185_1439872_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439858_1440818_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440859_1443220_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443219_1443852_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443953_1445294_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445340_1446696_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446821_1447466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447410_1447728_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448000_1448516_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448609_1448771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448786_1449542_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449880_1450087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450094_1450754_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451048_1453253_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453363_1454587_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454709_1455684_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455751_1456945_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456959_1457760_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457756_1459613_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459609_1460215_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460233_1461619_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462344_1463571_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463659_1464442_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464540_1465491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465517_1466291_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466302_1467544_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469325_1470276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1514201	1582287	4106384	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516915_1518028_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518714_1519917_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519952_1520099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520120_1522781_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522793_1526198_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526865_1529091_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529137_1529464_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529514_1530123_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532002_1532602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535288_1536401_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536390_1537392_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537497_1539009_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539005_1540310_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540421_1540982_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541249_1541804_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542259_1542475_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542729_1545327_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545323_1546511_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547169_1547784_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547872_1549000_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549011_1549917_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550809_1551760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551941_1552694_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552762_1553422_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553418_1554147_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554159_1556439_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556463_1556667_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556708_1557341_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557476_1558394_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558390_1559104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559341_1560112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560116_1560716_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560960_1562451_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562509_1562794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562931_1563087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563359_1564286_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564422_1565163_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565329_1566706_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566887_1567793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569444_1571247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571373_1572015_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572113_1573064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573085_1574306_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574491_1575904_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575967_1577035_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577034_1578522_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578531_1579476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579635_1580334_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580411_1581317_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581336_1582287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1618236	1673827	4106384	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618236_1619187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619245_1620019_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620011_1621568_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621564_1622515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623841_1624444_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624683_1625385_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625378_1626161_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626345_1627296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627394_1628132_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628321_1629080_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629126_1630116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630293_1631262_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632801_1633770_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633778_1634720_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635193_1636204_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636194_1637709_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637705_1639052_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639054_1640089_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640138_1641764_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642316_1643267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643371_1644319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644372_1646187_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646179_1646854_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646983_1650058_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650071_1650371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650685_1651309_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651552_1652422_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652399_1653344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653429_1654356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654468_1655248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655238_1656435_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656465_1657416_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657637_1658327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658391_1659147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659198_1660191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660200_1661154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661269_1662232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663633_1664062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664058_1665009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665302_1666040_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666463_1667651_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667654_1668035_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669754_1670726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670739_1671453_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671457_1672375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672481_1672778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672876_1673827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1831594	1890864	4106384	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831594_1832545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832669_1833479_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833679_1834630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835903_1837121_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838177_1839080_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839156_1840029_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840159_1840528_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840585_1841632_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841827_1843084_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843088_1844426_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844575_1845532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845634_1846567_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846682_1847003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846995_1847355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847402_1848977_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849029_1849974_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849991_1850822_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850814_1852449_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852445_1853801_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854707_1856285_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856288_1857563_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857660_1858035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859750_1860884_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860921_1861527_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861523_1862342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862413_1865038_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865024_1865279_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865345_1865927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866230_1866491_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866656_1867280_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867279_1868053_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868049_1869258_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869283_1869757_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869830_1870781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870879_1871830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871928_1873278_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874043_1874799_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874891_1877774_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878096_1878522_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878549_1879698_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879694_1880201_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880207_1881503_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881561_1882848_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882849_1883488_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883490_1884651_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884677_1886033_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886036_1887107_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887245_1887482_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887569_1888676_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888641_1889946_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889964_1890864_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1901104	1945427	4106384	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901104_1902055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902153_1903104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903303_1904389_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904404_1905166_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905162_1906122_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906184_1906685_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906717_1907461_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907556_1907796_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907809_1907962_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908047_1909538_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909629_1910568_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910564_1910741_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910743_1911406_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913027_1913171_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913167_1914142_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914036_1914291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914308_1915259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915255_1916530_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916633_1917827_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917823_1918477_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918473_1919910_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919897_1920257_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921071_1921212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921229_1922180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923225_1925091_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925348_1926869_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926956_1927607_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928555_1929851_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929872_1930757_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930855_1931731_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931720_1932077_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932207_1933182_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933311_1933491_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933588_1934113_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934123_1934960_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935072_1935444_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935440_1935992_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936007_1937699_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937747_1938428_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938675_1939140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939309_1940239_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940251_1940899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940972_1942790_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_010929591.1|1942873_1943824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944476_1945427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	1975200	2039569	4106384	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975200_1976151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976372_1977323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977421_1978387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978524_1979424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982018_1983506_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983516_1984713_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984785_1986105_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986101_1986977_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987007_1988156_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988173_1988488_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988509_1989232_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989231_1990050_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990054_1990582_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990587_1991844_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992202_1993342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993419_1994292_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995162_1996113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996072_1996708_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997067_1998390_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998708_1999530_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000954_2001527_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001566_2003396_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003358_2004417_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004454_2004916_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005000_2005747_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007237_2010468_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010534_2011866_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012118_2012493_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012595_2013774_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013784_2014375_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014485_2015292_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015317_2016112_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017112_2018087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018245_2018758_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018914_2019886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021630_2022437_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022433_2023735_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023685_2024450_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024563_2025334_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025418_2026606_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026678_2027053_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027153_2028416_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028412_2029270_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029442_2030444_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030895_2031846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033361_2034561_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034929_2035166_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035229_2035397_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035510_2037316_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037569_2038520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038618_2039569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2171098	2228377	4106384	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171098_2172049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172147_2174142_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174201_2175167_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175156_2178018_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178020_2178527_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178631_2179840_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179841_2180780_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180941_2181415_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181411_2182362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182472_2182913_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183041_2184271_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184309_2185131_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185184_2186336_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186427_2186916_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189466_2192016_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192086_2194660_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194925_2195126_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195157_2195319_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195376_2195715_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195863_2196814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197588_2198257_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198238_2200254_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200436_2201186_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201198_2202062_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202065_2203481_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203614_2204343_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204481_2204682_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204857_2205256_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205279_2206680_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206798_2207551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207839_2208439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208543_2209323_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209319_2210204_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210221_2211001_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210985_2211744_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211869_2212517_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212784_2213801_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213898_2214939_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215073_2216366_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217725_2218109_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218126_2218714_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218751_2219702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219800_2220361_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220357_2220903_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221098_2222127_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222167_2223508_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223616_2224621_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224727_2227328_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227426_2228377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2474960	2533204	4106384	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2474960_2475911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476390_2477047_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477061_2478729_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478731_2479361_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479572_2480667_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480811_2481624_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2481627_2483331_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2483381_2484512_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484698_2485775_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485856_2486507_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486521_2487925_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488208_2489027_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2489023_2489728_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490627_2491743_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491776_2492151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492173_2493331_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493343_2493577_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494211_2497181_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497195_2497405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497556_2498186_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2498182_2500273_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500296_2500977_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500973_2501534_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501540_2502638_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502790_2503384_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503380_2504673_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504686_2505229_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505238_2506075_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506108_2507170_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507211_2508264_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508279_2508582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508723_2509674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2509691_2509856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2509852_2511547_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511543_2512629_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512676_2513576_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513586_2514231_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515252_2518495_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518505_2519660_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519886_2520849_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520947_2521898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521996_2522947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522956_2523646_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523705_2524143_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524188_2525082_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525129_2526302_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526298_2527453_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2527649_2528000_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527989_2528424_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528440_2529391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529538_2530006_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529986_2531144_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531209_2532136_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532253_2533204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2575482	2641982	4106384	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575482_2576433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576802_2577375_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577377_2578388_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578380_2578881_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578891_2579233_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2579244_2580036_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580052_2580322_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580344_2581133_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581179_2582196_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582412_2583855_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584033_2585653_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585773_2587594_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587672_2589205_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2589238_2590885_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590954_2591977_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591994_2593128_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593130_2593820_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593819_2594605_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594648_2595413_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595451_2596873_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596938_2597643_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597690_2598110_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598122_2598530_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598713_2599424_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599550_2599841_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599858_2600341_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604846_2606001_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606306_2607323_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607569_2608358_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608424_2609105_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609101_2609872_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609970_2610921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610976_2611894_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611904_2613083_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613102_2614098_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615686_2616295_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616282_2617323_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617340_2618303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618299_2619493_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619489_2620287_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620312_2621299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621317_2623357_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2623558_2624239_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624252_2625164_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625160_2625739_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625877_2626783_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626790_2630210_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630197_2632798_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633753_2634386_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634779_2635538_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2635534_2636737_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636924_2637875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638782_2639928_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639914_2640670_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640786_2640966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641031_2641982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2670097	2707509	4106384	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670097_2671048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671146_2672097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672189_2672729_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672835_2673180_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673237_2674686_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674873_2675209_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676836_2678015_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678097_2678598_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678707_2679409_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2679420_2679885_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679899_2680175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680171_2680948_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680976_2681804_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681929_2682400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682526_2683420_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683467_2684649_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684661_2685477_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2685610_2686138_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686134_2686632_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686779_2687157_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687378_2688329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688427_2689039_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689273_2690401_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690511_2691600_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691652_2692504_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692523_2693405_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693581_2694895_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695105_2695939_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695935_2696517_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696870_2697821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697836_2698952_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699054_2699981_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699980_2701219_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701215_2701983_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701983_2702685_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702766_2703213_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2704102_2704741_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705509_2706460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706558_2707509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2806636	2861153	4106384	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2806636_2807587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807915_2808521_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808574_2809888_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809962_2810433_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810432_2811221_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811231_2812884_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812971_2813922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815083_2815590_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815586_2816351_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816366_2816651_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816715_2817705_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817876_2818806_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818777_2819464_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819497_2820043_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820087_2821353_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821349_2822252_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823433_2824378_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824472_2825990_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826031_2827660_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827767_2828649_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831761_2832136_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832160_2832499_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832542_2834177_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834215_2835562_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835669_2837091_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837160_2837745_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837847_2838798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838932_2840039_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840049_2841147_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841291_2842497_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842503_2843025_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843021_2843513_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843509_2843761_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843741_2844227_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844362_2847824_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847841_2848726_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848735_2849167_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849413_2849917_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849994_2851395_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851469_2852345_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852341_2853349_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853816_2854122_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854212_2854803_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854993_2856010_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856201_2858538_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858620_2859055_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859153_2860104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860202_2861153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2869178	2925964	4106384	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869178_2870129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871835_2872102_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872809_2873148_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877701_2878304_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878400_2879690_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879747_2880479_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880475_2881279_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881275_2882364_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882360_2883290_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883438_2884584_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884605_2885556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885573_2885732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885886_2889708_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889864_2890533_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890537_2892211_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892229_2893549_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893553_2895869_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895924_2898093_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898089_2903279_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903368_2903683_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903910_2904156_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904250_2904769_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904868_2906074_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906189_2907587_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907703_2908282_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908354_2909746_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909913_2910864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911144_2911765_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911761_2912175_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912171_2913215_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913270_2913459_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913468_2914233_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914323_2914980_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915071_2915830_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915855_2917457_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917657_2918662_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918762_2919026_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919143_2919920_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920510_2921461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923844_2924957_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925013_2925964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	2956350	3000041	4106384	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956350_2957301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957318_2957468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957421_2958318_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960595_2962821_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962985_2964074_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964030_2964684_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964731_2965529_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966060_2967011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967085_2968240_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968296_2969247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969345_2969651_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969679_2970114_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970115_2971360_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971356_2972067_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972081_2972993_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973355_2973760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973756_2974215_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974221_2975130_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975126_2975993_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975979_2976807_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976817_2977945_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979022_2980261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980302_2981565_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981571_2982324_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982375_2982561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982836_2983301_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983332_2983992_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984136_2986245_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986241_2987192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987295_2987916_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988007_2988760_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989894_2991019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991064_2991433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991674_2992625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993660_2994203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994400_2994571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994588_2995539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995535_2996501_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996570_2997407_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997919_2999029_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999090_3000041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3122624	3186459	4106384	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	57	NA	NA
WP_005015810.1|3122624_3123575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3123720_3124845_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3125050_3125614_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3126608_3127091_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3127248_3128496_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3128716_3129373_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3129408_3130638_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3130732_3130888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3130905_3131856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3131947_3133363_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3133368_3134505_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3134574_3134946_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3135033_3135780_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3135816_3136881_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3137069_3137462_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3137471_3137900_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3138195_3139293_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3139634_3140999_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3141057_3141609_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3141622_3142297_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3143553_3144363_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3144365_3145202_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3145216_3145909_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3145920_3146310_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3146415_3147804_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3147920_3149417_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3149713_3150388_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3150486_3151437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3151535_3152486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3152482_3154942_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3155038_3156484_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3156487_3157675_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3157743_3158253_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3158454_3158907_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3158879_3159446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3159468_3162531_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3162836_3165764_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3165785_3166982_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3167299_3167827_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3167965_3168541_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3168548_3170012_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3170022_3171150_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3171279_3172407_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3172432_3172672_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3172952_3173456_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3173628_3174570_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3174581_3175679_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3176644_3177991_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3178000_3178450_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3178539_3178974_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3179052_3179601_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3179683_3181054_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3181064_3181658_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3181729_3183613_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3183650_3184550_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3184546_3185410_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3185508_3186459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3234603	3248791	4106384	transposase,protease	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3234603_3235554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3235998_3236310_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236309_3236840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236796_3236985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3237002_3237953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238242_3238707_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238721_3240227_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3240483_3242088_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242143_3243049_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243489_3244440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244538_3245489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245570_3246152_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246576_3246882_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246895_3248230_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248251_3248791_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 29
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3267214	3331505	4106384	holin,transposase,protease,tRNA,integrase	Tupanvirus(12.5%)	49	3260608:3260626	3333366:3333384
3260608:3260626	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3267214_3267550_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267549_3268392_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268490_3269441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269505_3270477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270540_3271560_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271561_3272935_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273212_3273893_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3273905_3276032_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3276028_3277123_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277137_3278397_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3278416_3280141_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3280379_3281132_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281270_3282221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282533_3284012_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284018_3285128_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285139_3285820_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285841_3286597_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286732_3287617_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287704_3288286_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288546_3288846_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288997_3289477_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290196_3291633_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291629_3292133_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292148_3293099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293626_3294400_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294532_3295543_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295694_3297350_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297404_3297746_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297759_3299199_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299331_3300147_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300110_3300323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3300340_3301291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302678_3303626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303852_3304593_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304678_3305629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305646_3305802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307070_3308642_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308974_3310828_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3310872_3313437_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313855_3314806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3317671_3318166_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3318182_3319133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931301.1|3319316_3320528_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3320543_3323495_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3323496_3326616_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3326763_3327810_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3328151_3329279_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3329558_3330650_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3330722_3331505_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
3333366:3333384	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 30
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3381036	3434777	4106384	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381036_3381987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382391_3383036_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383060_3383645_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383745_3384363_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384365_3386081_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386077_3386386_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386402_3387020_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387064_3387367_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387467_3388322_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388509_3388734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388903_3389176_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389593_3390001_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390370_3391165_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391265_3392501_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392569_3393586_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393597_3394974_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394970_3396167_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396163_3397702_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397698_3398958_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400898_3401849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402615_3403710_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403702_3405037_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404990_3405674_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405699_3406863_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406859_3407861_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407860_3408733_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408729_3409479_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409475_3410267_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410263_3411403_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411678_3412464_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412497_3413280_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413283_3413673_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414812_3415676_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415711_3416800_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416796_3417747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418100_3421079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422005_3422884_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424832_3425783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425779_3426247_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426289_3427060_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427080_3427881_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427891_3429301_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429395_3430181_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430420_3431437_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431544_3431937_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432074_3432755_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432759_3433731_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433826_3434777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3440932	3500230	4106384	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440932_3442696_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442807_3443686_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443798_3444614_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444617_3444869_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444953_3445970_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446300_3446522_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448882_3449800_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450297_3451506_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451585_3453157_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453274_3454210_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454398_3455343_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455910_3461628_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461633_3462761_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462816_3463443_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463714_3464731_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464826_3465537_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465533_3466523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466618_3468250_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468252_3468990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469145_3470018_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470286_3471507_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471503_3472163_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472234_3472867_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472896_3473415_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473425_3474535_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474581_3475436_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475437_3476340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477562_3478513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480267_3481257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481253_3481412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481432_3482221_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482217_3483249_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483267_3483831_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483886_3485407_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485670_3486375_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486382_3487120_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487225_3487600_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487642_3488932_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488928_3490098_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490094_3490934_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490993_3491929_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491941_3492892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492990_3493953_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493984_3494344_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494468_3495371_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495372_3497145_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497179_3497956_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499279_3500230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	3515168	3573241	4106384	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515168_3516119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516247_3517381_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517424_3518330_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518332_3520033_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520029_3520950_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520957_3521935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521993_3523028_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525002_3525239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525365_3526229_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526317_3527139_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527218_3527956_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527952_3528945_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529058_3529721_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529765_3530914_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533237_3534188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534528_3535479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535577_3536528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536824_3537322_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537364_3539140_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539147_3540014_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540020_3540755_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541924_3542719_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543008_3543599_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543632_3544961_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545035_3546181_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546292_3547291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547253_3547688_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549204_3550089_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550085_3551291_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551287_3552148_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552260_3554051_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554091_3554757_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554757_3555066_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555231_3556518_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557951_3558902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560853_3562068_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562173_3563163_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563159_3563768_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563780_3564410_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564406_3565027_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565058_3565850_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566701_3567157_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567175_3568102_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568155_3569442_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570372_3571245_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571241_3572192_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572290_3573241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP011767	Bordetella pertussis strain J110 chromosome, complete genome	4106384	4028555	4081987	4106384	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028555_4029506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029675_4030902_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031101_4031968_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031960_4032923_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033023_4033974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034072_4035023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035121_4036072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036068_4037562_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037558_4040666_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040662_4043731_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043727_4044978_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045158_4045920_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045952_4046603_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046605_4047445_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047685_4048429_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048511_4048859_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048956_4049799_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049843_4050731_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050757_4050946_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051043_4052501_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052487_4054014_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054032_4054500_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054499_4055522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055642_4056362_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056437_4057538_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057539_4058730_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058849_4059866_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060184_4060856_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060852_4061761_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061972_4062620_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066471_4067548_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067558_4068368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068457_4069231_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069231_4069396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069413_4070364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070252_4071275_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071264_4072419_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072458_4073871_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073995_4074862_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074863_4075688_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075684_4076446_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076526_4077213_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077386_4078394_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078390_4079170_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079227_4080490_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081036_4081987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
