The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	0	59497	4106397	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	70134	123122	4106397	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	165942	226453	4106397	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	234385	287973	4106397	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	391906	449415	4106397	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	590420	651611	4106397	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	656935	703126	4106397	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	709292	763222	4106397	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	885811	953787	4106397	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	997316	1069833	4106397	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011049_1013110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047530_1048268_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048703_1049027_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049061_1049622_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049742_1050618_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050630_1051578_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051679_1051973_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051999_1054057_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054071_1054572_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054645_1056352_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057215_1058268_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058320_1058710_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058718_1059351_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061297_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1073586	1135662	4106397	holin,tRNA,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081513_1082464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117898_1118039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126681_1127506_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127505_1128384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129288_1130404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130432_1131227_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131223_1133089_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133167_1133800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133796_1134099_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134141_1135662_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1153232	1219752	4106397	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153232_1155029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155028_1155997_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156066_1156912_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156979_1157534_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158629_1159262_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159427_1161710_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161864_1164561_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164686_1165175_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167585_1170456_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170501_1171716_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171945_1173373_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173470_1174562_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174574_1175333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175420_1176323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176319_1177270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177399_1178383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178437_1179160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180638_1181994_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182074_1184450_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184614_1186690_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186751_1187546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187653_1188616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188603_1189359_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189466_1191104_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191171_1191909_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192011_1192587_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192759_1193296_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193328_1193643_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193658_1194504_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194542_1195922_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195999_1196881_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196979_1197930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197926_1198337_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198444_1199299_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199291_1200254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200299_1201424_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201529_1202408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202532_1203312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203465_1204887_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205321_1207019_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207245_1208187_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208513_1209260_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209267_1210194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210315_1211233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211272_1212226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212250_1212829_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214502_1215111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215188_1215542_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215625_1216615_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216611_1216800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216817_1217768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217854_1218805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218801_1219752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1270680	1327891	4106397	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270680_1271631_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275377_1275989_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276211_1277672_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277768_1279361_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279714_1279972_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279973_1281314_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281409_1282099_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282111_1283542_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285266_1286088_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286098_1287670_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287698_1288676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288702_1289506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289502_1290297_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290304_1291540_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291553_1291967_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292716_1293667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294288_1296016_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296127_1297486_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297542_1297761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297778_1298729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298769_1299840_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299862_1300741_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300912_1301884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302046_1302889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303050_1303731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303724_1304894_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304890_1305922_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305989_1307207_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307241_1308774_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308854_1309478_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309508_1310120_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310155_1310626_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311057_1312062_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312098_1313613_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313616_1314576_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314604_1315408_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315409_1317044_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317127_1318189_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318387_1318657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318660_1319185_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319600_1320551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320547_1321582_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321690_1322329_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322623_1322851_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322973_1323687_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323931_1324882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325021_1325267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325381_1326830_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326940_1327891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1418124	1482340	4106397	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1418124_1419075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419092_1419245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419241_1419595_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419607_1419970_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420011_1420437_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420639_1421896_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422094_1423075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423224_1424466_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424564_1425515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425523_1426219_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429040_1429640_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429650_1431816_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431839_1433624_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433623_1433713_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434407_1434680_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434679_1436746_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436742_1437693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437791_1438742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438857_1439190_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439186_1439873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439859_1440819_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440851_1443221_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443220_1443853_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443954_1445295_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445341_1446697_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446987_1447224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447411_1447729_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448001_1448517_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448787_1449543_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449881_1450088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450095_1450755_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451049_1453254_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453364_1454588_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454710_1455685_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455752_1456946_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456960_1457761_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457757_1459614_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459610_1460216_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460234_1461620_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462345_1463572_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463660_1464443_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464541_1465492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465518_1466292_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466303_1467545_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1469361_1470189_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1470190_1470901_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1470897_1471497_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1471605_1472199_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1472250_1472433_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1472489_1473548_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1473547_1474534_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1474615_1475551_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1475552_1476305_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1476487_1476727_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1476916_1478146_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1478147_1478648_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1478644_1479244_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1479256_1479757_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1479756_1480815_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1480852_1482340_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 15
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1664807	1723799	4106397	transposase	Enterobacteria_phage(33.33%)	60	NA	NA
WP_010929591.1|1664807_1665758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1665754_1667077_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1667177_1667495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1667628_1668942_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1668972_1670610_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1671233_1671710_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013747.1|1672011_1672962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698385.1|1672979_1673123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930833.1|1673305_1673761_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_003809869.1|1673796_1674063_-	type III secretion protein	NA	NA	NA	NA	NA
WP_003820040.1|1674052_1674352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930832.1|1674392_1675673_-	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_010930831.1|1675669_1677769_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010930830.1|1677765_1678134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930829.1|1678130_1678541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930828.1|1678545_1678923_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930827.1|1678919_1680017_-	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA	NA
WP_003820049.1|1680180_1680798_+	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930826.1|1680819_1681095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568102.1|1681110_1681596_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930825.1|1681643_1682585_+	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_010930824.1|1682608_1683817_+	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_003809889.1|1683840_1684302_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930823.1|1684306_1684828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248576.1|1684824_1685232_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_010930821.1|1685228_1686053_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_003820059.1|1686045_1686708_+	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930820.1|1686677_1687316_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_003820061.1|1687320_1688655_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_003820063.1|1688654_1689164_+	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_010930819.1|1689160_1689709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930818.1|1689705_1690785_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_004568087.1|1690781_1691453_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_010930817.1|1691458_1691725_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_010930816.1|1691736_1692537_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_010930815.1|1692533_1693583_+	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA	NA
WP_010930814.1|1693579_1693978_+	type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930813.1|1693968_1695771_+	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA	NA
WP_003809919.1|1695791_1696394_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930812.1|1696568_1697267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|1697303_1697504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905553.1|1698830_1700018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930809.1|1700014_1702036_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_023995091.1|1702120_1704562_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930807.1|1704558_1705722_-	alanine racemase	NA	NA	NA	NA	NA
WP_003809933.1|1705805_1706234_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003820087.1|1706377_1706728_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|1706724_1708182_-	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_010930805.1|1708836_1711548_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|1711806_1712079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|1712075_1713026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1713124_1714075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1714173_1716774_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1716880_1717885_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1717993_1719334_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1719374_1720403_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1720598_1721144_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1721140_1721701_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1721799_1722750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1722848_1723799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1897698	1967350	4106397	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1897698_1900356_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1900433_1901636_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1901632_1902145_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1902267_1902705_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1902981_1903932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1904030_1904981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1905144_1907040_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1907153_1907321_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1907384_1907621_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1907989_1909141_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1910704_1911655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1912106_1913108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1913280_1914138_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1914134_1915397_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1915497_1915872_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1915944_1917132_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1917216_1917987_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1918100_1918865_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1918815_1920117_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1920113_1920920_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1922664_1923636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1923792_1924305_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1924463_1925438_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1926438_1927233_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1927258_1928065_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1928175_1928766_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1928776_1929955_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1930057_1930432_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1930684_1932016_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1932082_1935313_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1936803_1937550_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1937634_1938096_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1938133_1939192_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1939154_1940984_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1941023_1941596_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1943020_1943842_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1944160_1945483_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1945842_1946478_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1946437_1947388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1948258_1949131_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1949208_1950348_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1950706_1951963_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1951968_1952496_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1952500_1953319_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|1953318_1954041_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1954062_1954377_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1954394_1955543_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1955573_1956449_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1956445_1957765_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1957837_1959034_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1959044_1960532_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1963126_1964026_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1964163_1965129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1965227_1966178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1966399_1967350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	1978846	2026154	4106397	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1978846_1979797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1979895_1980192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1980366_1981719_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1981861_1982878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1984857_1985871_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1985957_1986863_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1987019_1987364_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1987521_1987980_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1987993_1990210_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1990206_1991268_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1991296_1992271_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1992222_1993041_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1993053_1993662_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|1993836_1994232_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994250_1995690_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1995718_1996066_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1996084_1997035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1997687_1998638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1998721_2000539_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2000612_2001260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2001272_2002202_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2002371_2002836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2003083_2003764_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2003812_2005504_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2005519_2006071_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2006067_2006439_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2006551_2007388_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2007398_2007923_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2008020_2008200_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2008329_2009304_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2009434_2009791_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2009780_2010656_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2010754_2011639_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2011660_2012956_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2013904_2014555_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2014642_2016163_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2016420_2018286_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2018282_2019233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2019250_2019391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2020205_2020565_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2020552_2021989_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2021985_2022639_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2022635_2023829_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2023932_2025207_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2025203_2026154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2037358	2078049	4106397	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2037358_2038309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2038407_2039358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2039317_2039731_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2040015_2040315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2040724_2043007_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2043692_2045723_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2045742_2045955_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2046232_2046772_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2046885_2048181_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2048257_2049415_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2049598_2050498_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2050516_2051821_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2051786_2052893_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2052980_2053217_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2053355_2054426_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2054429_2055785_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2055811_2056969_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2056974_2057613_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2057614_2058910_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2058959_2060246_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2060261_2060768_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2060764_2061913_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2061940_2062366_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2062688_2065571_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2065663_2066419_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2067184_2068534_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2068632_2069583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2069681_2070632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2070705_2071179_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2071204_2072413_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2072409_2073183_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2073182_2073806_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2073971_2074232_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2074535_2075117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2075183_2075438_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2075424_2078049_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2215056	2276404	4106397	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2215056_2216007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2216123_2216843_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2217015_2218002_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2218002_2218485_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2218488_2219772_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2219768_2220707_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2220703_2222413_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2222422_2223670_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2225280_2226570_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2227707_2228481_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2229142_2229886_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2229960_2230701_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2230896_2231733_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2231783_2232554_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2232603_2233656_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2233652_2234279_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2234275_2235310_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2235488_2236505_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2236603_2237554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2240294_2241584_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2241702_2242140_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2242183_2243392_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2243538_2244003_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2244026_2244977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2245961_2246735_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2246731_2247730_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2247814_2248591_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2248746_2250351_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2250731_2251856_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2251982_2252606_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2252602_2254504_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2254552_2255347_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2255359_2256361_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2256357_2256807_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2256856_2257705_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2257802_2258345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2258388_2259339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2259494_2259821_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2259817_2260099_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2260098_2260578_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2260574_2262203_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2262199_2262544_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2262543_2265477_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2266635_2267586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2267684_2267981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2268087_2269005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2269009_2269723_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2269736_2270708_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2272457_2272808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2272811_2273999_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2274437_2275160_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2275453_2276404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2297195	2368349	4106397	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2297195_2298146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2298698_2300324_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2300373_2301408_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2301410_2302757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2302753_2304268_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2304258_2305269_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2305742_2306684_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2306692_2307661_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2309200_2310169_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2310346_2311336_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2311382_2312141_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2312330_2313068_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2313166_2314117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2314301_2315084_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2315077_2315779_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2316018_2316621_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2317947_2318898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2318894_2320451_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2320443_2321217_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2321275_2322226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2322307_2323483_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2323496_2325554_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2325550_2326576_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2326587_2327877_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2327899_2328997_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2328993_2329884_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2329880_2331965_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2331996_2333166_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2333207_2333948_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2333947_2334718_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2335573_2336359_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2336385_2338470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2338637_2340593_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2340916_2341417_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2341515_2343042_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2343179_2344067_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2344081_2345035_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2345086_2347177_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2347192_2347579_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2350272_2351076_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2352369_2353272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2353336_2354113_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2354434_2355484_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2355607_2357278_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2357282_2358077_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2358175_2359126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2359145_2360051_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2360128_2360827_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2360986_2361931_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2361940_2363428_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2363427_2364495_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2364558_2365971_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2366156_2367377_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2367398_2368349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2465227	2524008	4106397	tRNA,transposase	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2465227_2467177_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2467564_2468341_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2468346_2468739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2469160_2470111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2470107_2471205_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2471236_2472187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2473968_2475210_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2475221_2475995_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2476021_2476972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477451_2478108_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478122_2479790_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479792_2480422_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480633_2481728_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481872_2482685_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482688_2484272_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484442_2485573_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485759_2486836_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486917_2487568_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487582_2488986_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489269_2490088_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490084_2490789_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491688_2492804_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492837_2493212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493234_2494392_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494404_2494638_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495272_2498242_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498256_2498466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498617_2499247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499243_2501301_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501357_2502038_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502034_2502595_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502601_2503699_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503851_2504445_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504441_2505734_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505747_2506290_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506299_2507136_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507169_2508231_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508272_2509325_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509340_2509643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509784_2510735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510752_2510917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510913_2512608_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512604_2513690_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513737_2514637_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514647_2515292_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516313_2519556_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519566_2520721_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520947_2521910_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2522008_2522959_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523057_2524008_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2576543	2643043	4106397	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576543_2577494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577863_2578436_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578438_2579449_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579441_2579942_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579952_2580294_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580362_2581097_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581113_2581383_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581405_2582194_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582240_2583257_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583473_2584916_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585094_2586714_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586834_2588655_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588733_2590266_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590299_2591946_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592015_2593038_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593055_2594189_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594191_2594881_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594880_2595666_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595709_2596474_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596512_2597934_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597999_2598704_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598751_2599171_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599183_2599591_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599774_2600485_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600611_2600902_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600919_2601402_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605907_2607062_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607367_2608384_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608630_2609419_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609485_2610166_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610162_2610933_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611031_2611982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612037_2612955_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612965_2614144_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614163_2615159_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616747_2617356_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617343_2618384_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618401_2619364_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619360_2620554_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620550_2621348_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621373_2622360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622378_2624418_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624619_2625300_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625313_2626225_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626221_2626800_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626938_2627844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627851_2631271_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631258_2633859_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634814_2635447_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635840_2636599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636595_2637798_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637985_2638936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639843_2640989_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640975_2641731_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641847_2642027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642092_2643043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2671158	2708570	4106397	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671158_2672109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672207_2673158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673250_2673790_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673896_2674241_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674298_2675747_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675934_2676270_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677897_2679076_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679158_2679659_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679768_2680470_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680481_2680946_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680960_2681236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681232_2682009_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682037_2682865_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682990_2683461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683587_2684481_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684528_2685710_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685722_2686538_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686671_2687199_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687195_2687693_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687840_2688218_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688439_2689390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689488_2690100_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690334_2691462_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691572_2692661_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692713_2693565_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693584_2694466_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694642_2695956_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696166_2697000_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696996_2697578_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697931_2698882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698897_2700013_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700115_2701042_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701041_2702280_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702276_2703044_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703044_2703746_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703827_2704274_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705163_2705802_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706570_2707521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707619_2708570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2807697	2862214	4106397	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807697_2808648_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808976_2809582_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809635_2810949_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811023_2811494_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811493_2812282_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812292_2813945_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814032_2814983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816144_2816651_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816647_2817412_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817427_2817712_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817776_2818766_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818937_2819867_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819838_2820525_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820558_2821104_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821148_2822414_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822410_2823313_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824494_2825439_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825533_2827051_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827092_2828721_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828828_2829710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832822_2833197_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833221_2833560_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833603_2835238_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835276_2836623_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836730_2838152_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838221_2838806_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838908_2839859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839993_2841100_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841110_2842208_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842352_2843558_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843564_2844086_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844082_2844565_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844570_2844822_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844802_2845288_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845423_2848885_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848902_2849787_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849796_2850228_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850474_2850978_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851055_2852456_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852530_2853406_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853402_2854410_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854877_2855183_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855273_2855864_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856054_2857071_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857262_2859599_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859681_2860116_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860214_2861165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861263_2862214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2870239	2927026	4106397	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2870239_2871190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872896_2873163_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873870_2874209_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878763_2879366_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879462_2880752_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880809_2881541_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881537_2882341_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882337_2883426_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883422_2884352_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884500_2885646_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885667_2886618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886635_2886794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886948_2890770_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890926_2891595_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891599_2893273_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893291_2894611_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894615_2896931_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896986_2899155_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899151_2904332_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904430_2904745_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904972_2905218_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905312_2905831_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905930_2907136_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907251_2908649_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908765_2909344_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909416_2910808_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910975_2911926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912206_2912827_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912823_2913237_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913233_2914277_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914332_2914521_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914530_2915295_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915385_2916042_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916133_2916892_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916917_2918519_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918719_2919724_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919824_2920088_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920205_2920982_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921572_2922523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924906_2926019_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926075_2927026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	2957412	3001103	4106397	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2957412_2958363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958380_2958530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958483_2959380_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961657_2963883_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964047_2965136_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965092_2965746_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965793_2966591_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967122_2968073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968153_2969302_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969358_2970309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970407_2970713_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970741_2971176_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971177_2972422_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972418_2973129_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973143_2974055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974417_2974822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974818_2975277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975283_2976192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976188_2977055_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977041_2977869_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977879_2979007_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980084_2981323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981364_2982627_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982633_2983386_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983437_2983623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983898_2984363_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984394_2985054_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985198_2987307_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987303_2988254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988357_2988978_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989081_2989822_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990956_2992081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992126_2992495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992736_2993687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994722_2995265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995462_2995633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995650_2996601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996597_2997506_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997632_2998469_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998981_3000091_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3000152_3001103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	3381049	3434790	4106397	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381049_3382000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382404_3383049_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383073_3383658_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383758_3384376_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384378_3386094_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386090_3386399_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386415_3387033_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387077_3387380_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387480_3388335_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388522_3388747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388916_3389189_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389606_3390014_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390383_3391178_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391278_3392514_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392582_3393599_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393610_3394987_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394983_3396180_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396176_3397715_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397711_3398971_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400911_3401862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402628_3403723_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403715_3405050_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405003_3405687_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405712_3406876_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406872_3407874_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407873_3408746_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408742_3409492_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409488_3410280_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410276_3411416_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411691_3412477_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412510_3413293_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413296_3413686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414825_3415689_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415724_3416813_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416809_3417760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418113_3421092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422018_3422897_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424845_3425796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425792_3426260_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426302_3427073_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427093_3427894_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427904_3429314_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429408_3430194_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430433_3431450_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431557_3431950_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432087_3432768_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432772_3433744_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433839_3434790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	3440945	3500243	4106397	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440945_3442709_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442820_3443699_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443811_3444627_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444630_3444882_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444966_3445983_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446313_3446535_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448895_3449813_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450310_3451519_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451598_3453170_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453287_3454223_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454411_3455356_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455923_3461641_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461646_3462774_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462829_3463456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463727_3464744_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464839_3465550_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465546_3466536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466631_3468263_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468265_3469003_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469158_3470031_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470380_3471520_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471516_3472176_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472247_3472880_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472909_3473428_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473438_3474548_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474594_3475449_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475450_3476353_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477575_3478526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480280_3481270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481445_3482234_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482230_3483262_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483280_3483844_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483899_3485420_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485683_3486388_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486395_3487124_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487238_3487613_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487655_3488945_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488941_3490111_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490107_3490947_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491006_3491942_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491954_3492905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493003_3493966_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493997_3494357_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494481_3495384_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495385_3497158_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497192_3497969_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499292_3500243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	3515181	3573254	4106397	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515181_3516132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516260_3517394_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517437_3518343_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518345_3520046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520042_3520963_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520970_3521948_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522006_3523041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3525015_3525252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525378_3526242_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526330_3527152_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527231_3527969_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527965_3528958_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529110_3529734_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529778_3530927_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533250_3534201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534541_3535492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535590_3536541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536837_3537335_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537377_3539153_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539160_3540027_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540033_3540768_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541937_3542732_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543021_3543612_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543645_3544974_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545048_3546194_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546305_3547304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547266_3547701_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549217_3550102_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550098_3551304_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551300_3552161_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552273_3554064_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554104_3554749_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554770_3555079_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555244_3556531_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557964_3558915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560866_3562081_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562186_3563176_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563172_3563781_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563793_3564423_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564419_3565040_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565071_3565863_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566714_3567170_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567188_3568115_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568168_3569455_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570385_3571258_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571254_3572205_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572303_3573254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011768	Bordetella pertussis strain J115 chromosome, complete genome	4106397	4005465	4070377	4106397	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005465_4005951_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006039_4006177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006169_4007150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007416_4008226_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008265_4008946_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008939_4009398_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009409_4009772_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009854_4010538_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010593_4010902_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010920_4011235_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011231_4013706_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013713_4015105_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015101_4015287_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015265_4015967_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015963_4016785_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016765_4017890_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017882_4018902_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019107_4019998_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020242_4021034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021116_4021491_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021468_4022878_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022870_4024253_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024587_4026192_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026269_4027241_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027251_4028178_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028568_4029519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029688_4030915_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031114_4031981_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031973_4032936_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033036_4033987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034085_4035036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035134_4036085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036081_4037575_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037571_4040679_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040675_4043744_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043740_4044991_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045171_4045924_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045965_4046610_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046618_4047599_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047698_4048442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048524_4048872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048969_4049812_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049856_4050744_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050770_4050959_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051056_4052514_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052500_4054027_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054045_4054513_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054512_4055535_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055655_4056396_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056450_4057551_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057552_4058743_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058862_4059879_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060197_4060869_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060865_4061774_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061985_4062633_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066493_4067561_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067571_4068381_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068470_4069244_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069244_4069409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069426_4070377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
