The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	27282	83589	4134432	transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929591.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931680.1|36122_37385_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|37442_38222_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931679.1|38218_39226_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|39399_40086_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|40166_40928_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|40924_41749_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247370.1|41750_42617_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931675.1|42741_44154_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|44193_45348_-	CoA transferase	NA	NA	NA	NA	NA
WP_077274100.1|45337_46360_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929577.1|46248_47199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815086.1|47381_48155_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|48244_49054_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|49064_50141_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|53992_54640_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|54851_55760_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|55756_56428_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|56746_57763_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|57882_59073_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|59074_60175_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_169507388.1|60250_60970_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_010931671.1|61090_62113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|62112_62580_+	CopD family protein	NA	NA	NA	NA	NA
WP_010931670.1|62598_64125_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|64111_65569_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|65666_65855_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|65881_66769_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|66813_67656_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|67753_68101_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|68183_68927_-	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003820519.1|69167_70007_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|70009_70660_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|70692_71454_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|71634_72885_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|72881_75950_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_057052752.1|75946_79054_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|79050_80544_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|80540_81491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|81589_82540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|82638_83589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	272868	331456	4134432	transposase	uncultured_Mediterranean_phage(20.0%)	42	NA	NA
WP_005012067.1|272868_273819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|273917_274868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|274864_276055_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|276176_276941_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|277027_278131_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|278322_279339_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|279620_280109_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|281452_282133_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|282194_283046_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|283042_283840_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|283943_284837_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|284848_286738_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|287074_290848_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_005012067.1|290844_291795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|292103_292796_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|293169_293670_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|293776_294697_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|294713_295190_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|295283_297134_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|297189_297948_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|297975_299409_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|299482_300262_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|300274_301108_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|301116_301887_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|301886_302951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069023.1|303102_305730_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|305793_308415_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|309342_309801_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|310079_312323_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|312519_314544_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|314667_315630_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|315841_316981_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|317003_317969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|318164_319355_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|319368_319614_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|319642_321664_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|321710_323318_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|323418_324588_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|327469_328420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|328443_329502_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|329576_329951_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|330505_331456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	347310	387725	4134432	integrase,transposase	Acinetobacter_phage(10.0%)	38	335938:335962	383010:383034
335938:335962	attL	CGCTGCCCCGGTACGGCACGTGCAG	NA	NA	NA	NA
WP_005012067.1|347310_348261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|348718_349642_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|349650_350049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|350290_352261_+	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_010929843.1|353747_354737_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|354733_354934_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|355046_355388_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_019247983.1|355398_356583_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|356619_357147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|357204_357852_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|357848_358835_-	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|358838_359021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|359017_359395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|359628_360096_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|360131_361082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926414.1|361180_361423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929852.1|361589_362231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|362241_363192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807740.1|363301_363697_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929854.1|363866_364568_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929855.1|364831_365692_+	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_003807743.1|365766_366102_-	YegP family protein	NA	NA	NA	NA	NA
WP_010929856.1|366242_367388_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929857.1|367415_368075_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929858.1|369079_369286_+	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_003807750.1|369551_369683_+	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_094145972.1|370129_377032_+	autotransporter BatB	NA	NA	NA	NA	NA
WP_023853476.1|377083_377665_+	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_010929862.1|377937_378915_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929863.1|378949_380503_+	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929864.1|380510_381251_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929865.1|381274_382039_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003807759.1|382083_382419_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_023853484.1|382472_383402_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
383010:383034	attR	CTGCACGTGCCGTACCGGGGCAGCG	NA	NA	NA	NA
WP_005012067.1|383361_384312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929866.1|384430_385375_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_003816336.1|385371_386613_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_005013747.1|386774_387725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	530624	647470	4134432	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_023995489.1|530624_531575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|532297_533572_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|533658_534741_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|534751_535564_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|535600_535927_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|535931_536492_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|536732_537725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|537743_538739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|538754_540131_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|540123_542505_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|542521_542911_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|543037_543268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|543372_544323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|544421_545372_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|545368_546241_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|547171_548458_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|548511_549438_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|549456_549912_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|550763_551555_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|551586_552207_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|552203_552833_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|552845_553454_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|553450_554440_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|554545_555760_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|557711_558662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|560095_561382_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|561547_561856_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|561856_562522_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|562562_564353_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|564465_565326_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|565322_566528_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|566524_567409_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|568925_569360_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|569322_570321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|570432_571578_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|571652_572981_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|573014_573605_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|573894_574689_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|575858_576593_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|576599_577466_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|577473_579249_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|579291_579789_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|580085_581036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|581134_582085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|582425_583376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|585699_586848_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|586892_587555_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|587668_588661_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|588657_589395_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|589474_590296_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|590384_591248_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|591374_591611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|593585_594620_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|594678_595656_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|595663_596584_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|596580_598281_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|598283_599189_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|599232_600366_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|600494_601445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|601543_603613_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|603655_605758_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|606064_607141_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|607216_608101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|608283_608706_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|608715_610116_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|610158_611064_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|611162_612704_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|612738_613278_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|613290_613761_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|613898_614141_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|614257_615139_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|615211_615532_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|616383_617334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|618657_619434_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|619468_621241_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|621242_622145_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|622269_622629_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|622660_623623_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|623721_624672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|624684_625620_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|625679_626519_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|626515_627685_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|627681_628971_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|629013_629388_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|629493_630231_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|630238_630943_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|631206_632727_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|632782_633346_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|633364_634396_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|634392_635181_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|635201_635360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905441.1|635356_636346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|638102_639053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|640275_641178_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|641179_642034_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|642080_643190_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|643200_643719_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|643748_644381_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|644452_645112_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|645108_646329_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|646597_647470_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	651884	715716	4134432	tRNA,transposase	Pandoravirus(12.5%)	48	NA	NA
WP_010931363.1|651884_652901_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|653172_653799_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|653854_654982_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|654987_660705_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|661272_662217_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|662405_663341_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|663458_665030_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|665109_666318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|666815_667733_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|670093_670315_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|670645_671662_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|671746_671998_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|672001_672817_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|672929_673808_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|673919_675683_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|675798_677139_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931360.1|677135_678191_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010927010.1|678207_679632_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|679631_680333_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|681837_682788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|682883_683855_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|683859_684540_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|684677_685070_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|685177_686194_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|686433_687219_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|687313_688723_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|688733_689534_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|689554_690325_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|690367_690835_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|690831_691782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|693730_694609_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|695535_698514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|698867_699818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|699814_700903_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|700938_701802_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|702941_703331_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|703334_704117_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|704150_704936_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|705211_706351_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|706347_707139_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|707135_707885_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|707881_708754_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|708753_709755_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|709751_710915_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|710940_711624_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|711577_712912_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|712904_713999_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|714765_715716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	734497	803808	4134432	tRNA,transposase,protease,integrase	Bacillus_phage(20.0%)	54	734499:734558	812925:813972
WP_005012067.1|734497_735448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
734499:734558	attL	TAGCTGTGAACTGTCAATAGGTTGTATTCGTCCAGGTTGAGTCTGGAGATGGGTACAGCG	NA	NA	NA	NA
WP_010929956.1|735676_736627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|736725_738201_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|739788_740676_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|740678_741620_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|741665_743231_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|745008_746334_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|746516_747974_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|747937_748435_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|748465_749437_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|749489_749927_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|750050_750719_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|751447_752551_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|752653_753931_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|753942_754968_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|754969_756340_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|756340_757477_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|757523_759449_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|759445_760567_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|760563_761718_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|761714_762845_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|762852_764418_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|764424_765807_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|766085_766697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|766788_768204_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|768221_768932_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|768928_770251_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|770330_772292_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|772417_773731_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|773839_775138_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|775320_776229_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|776238_776448_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|776459_778139_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|778240_779194_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|779284_780112_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|780110_781997_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|781993_782593_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|782641_783541_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_010931310.1|783749_784700_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|784822_785437_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|785565_786162_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|786158_786941_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|787013_788105_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|788384_789512_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|789853_790900_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|791047_794167_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|794168_797120_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|797135_798347_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|798530_799481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|799497_799992_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|799995_800253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|800796_801708_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|801789_802074_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|802857_803808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
812925:813972	attR	CGCTGTACCCATCTCCAGACTCAACCTGGACGAATACAACCTATTGACAGTTCACAGCTAACCATTCATGTCGTGTGGCCCGGCCTGGTGGTCCGGGCGGGAGGGGCGGGAGGGCCGGGCCGGACTGTGGCGTCCGGCGGCCAGGCTCAGGCGGCGAGGCCGCGCCGTGCGCGCTTCTTCGGTTCCGTGCCCGCCGCGCGGGAGGCGCCGTCGTCCGATTCGCCGGCGAGATGGACGGGCCGGAGTTCGCCGGCCCGGCGCAGTTCTTCATATCGGCTGCTGCCGCGCGGCAGCAGCAGGTCTTTCCAGGCGGCATGGATCGCCTGGTCGAGAGACTCATCCAGCGTGACGATGCGACGCAAGCGCCAATGCTTCAGGGGCCATGCATGCGCCGCAATGATGATGCGGTACACCAGCAGCTCCACGTTGGTGGGCGCCAGGTAGCCCGCGCGTATGCAATCCGTGGCGCATGCTTCGATAAGCCTGTTGGTGTCGAGTTCGAGCTGCTTCATCTGCTCGATGTATTCGGGCTTGAGAGACTTGGTCTCGCGGTAGGTCAGCAGCACGGCTTGCTGGTTGGCGGCCATGACGCGCGTGTAGGCATCGATGGCGCGGTACAGGCGCGCGATGGGATCTTCGACGCCCAGCAAGGCCGACGGCACTTCTTCCTTGTTGCGCTGGACGATGTGCTGCAGCGCCAGGAACAGCAGGTCCTGCTTGTCCGGCACGTACTGGTACATCAGGCCGGCGCTGACGCCAGCCTCCTGCGCGATGTCCTTGACCGTGGCGGCGTGGTACCCCATGCGCGAAAACAGCTTGATCGCGGCCTTTACCAGTTGCGCGCGGCGTCGTGTTACCAGGGAGGAGTCGTCGACGGAATGGGGCATGTTGGGGTGGGGCTCCTGCGGCGCCGCCGTGGGCGCCGCGGTGGACTGACGGCCTGCAGTGGTGGCCTGGTCGCTGACAACAACGGCCGCCGGGTCTGCATTATGGAGCCATGTTCGCCCCGCCGCCAAGCCGGGCGGGGTTGGGCCATGGCCCTGGCGTA	NA	NA	NA	NA
>prophage 7
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	812034	869076	4134432	tRNA,transposase,protease,holin	Planktothrix_phage(11.11%)	55	NA	NA
WP_005012067.1|812034_812985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|813070_813811_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|814037_814985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|816372_817323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|817516_818332_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|818464_819904_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|819917_820259_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|820313_821969_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|822120_823131_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|823263_824037_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|824564_825515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003808356.1|825530_826034_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853362.1|826030_827467_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931296.1|828186_828666_+	membrane protein	NA	NA	NA	NA	NA
WP_004566249.1|828817_829117_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931294.1|829377_829959_-	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010925959.1|830046_830931_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003808340.1|831066_831822_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003808339.1|831843_832524_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010931293.1|832535_833645_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_029443788.1|833651_835130_-	phospholipase D family protein	NA	NA	NA	NA	NA
WP_005012808.1|835442_836393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|836491_837442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|837523_838105_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|838529_838835_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|838848_840183_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|840204_840744_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807164.1|840891_841356_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931290.1|841498_842614_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807166.1|842890_843394_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_019248127.1|843567_843732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931288.1|843722_844445_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_010931287.1|844441_845338_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931286.1|845334_846270_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247300.1|846230_846899_+	DUF1007 family protein	NA	NA	NA	NA	NA
WP_003818434.1|846889_847858_+	putative membrane protein	NA	NA	NA	NA	NA
WP_010931283.1|847906_850048_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931282.1|850060_851041_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931281.1|851055_851748_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_003807183.1|851774_852686_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931280.1|852728_853619_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931279.1|853615_854470_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010925730.1|854753_855917_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_003818441.1|856027_856279_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_003807194.1|856358_857399_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_010931278.1|857678_859097_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_010931277.1|859167_859503_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|859502_860345_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931070.1|860443_861394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|861458_862430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|862493_863513_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|863514_864888_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|865165_865846_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|865858_867985_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|867981_869076_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
>prophage 8
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1058949	1160293	4134432	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1058949_1060065_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1060165_1060984_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1061081_1061693_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1061852_1063229_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1063291_1063750_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1063834_1064530_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1064591_1064873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1065435_1066188_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1066232_1067309_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1067305_1068256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1068358_1069021_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1069115_1069286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1069638_1070640_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1070642_1071839_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1071859_1072663_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1072743_1073040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1073070_1073634_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1073674_1074532_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1074539_1075289_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1075310_1076183_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1076211_1076991_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1077024_1077822_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1080476_1080869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1080862_1081723_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1081726_1082689_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1083465_1084155_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1085015_1085966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1086315_1087185_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1087255_1087951_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1087940_1088450_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1088446_1089667_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1089614_1090517_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1091403_1092690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1092728_1094102_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1094140_1094842_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1095140_1096130_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1096230_1096692_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1096707_1097256_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1097397_1098873_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1098978_1100070_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1100073_1100856_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1100865_1101654_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1102779_1103214_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1103210_1104221_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1104264_1105191_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1105477_1105846_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1106062_1107013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1107057_1109484_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1109532_1110225_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1110297_1111497_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1111514_1112420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1112535_1113465_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1113490_1114837_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1114864_1115614_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1115627_1116410_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1116602_1117553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1117614_1118724_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1119236_1120073_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1120142_1121108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930176.1|1121104_1122055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1122440_1122983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1124018_1124969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1125210_1125579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1125624_1126749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1127883_1128636_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1128727_1129348_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1129451_1130402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1130398_1132507_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1132651_1133311_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1133342_1133807_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1134082_1134268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1134319_1135072_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1135078_1136341_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1136382_1137621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1138698_1139826_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1139836_1140664_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1140650_1141517_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1142883_1143288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1143650_1144562_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1144576_1145287_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1145283_1146528_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1146529_1146964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1146992_1147298_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1147396_1148347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1148403_1149558_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1149632_1150583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1151114_1151912_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1151959_1152613_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1152569_1153658_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1153822_1156048_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1158325_1159222_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1159342_1160293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1190679	1261649	4134432	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_010929584.1|1190679_1191630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1191686_1192799_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1195182_1196133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1196723_1197500_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1197617_1197881_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1197981_1198986_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1199186_1200788_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1200813_1201572_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1201663_1202320_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1202410_1203175_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1203184_1203373_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1203428_1204472_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1204468_1204882_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1204878_1205499_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1205779_1206730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1206897_1208289_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1208361_1208940_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1209056_1210454_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1210569_1211775_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1211874_1212393_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1212487_1212733_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1212960_1213275_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1213364_1218554_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1218550_1220719_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1220774_1223090_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1223094_1224414_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1224432_1226106_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1226110_1226779_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1226935_1230757_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1231087_1232038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1232059_1233205_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1233353_1234283_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1234279_1235368_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1235364_1236168_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1236164_1236896_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1236953_1238243_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1238339_1238942_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1243494_1243833_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1244540_1244807_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1246513_1247464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1247460_1248792_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1250052_1252053_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1252045_1252687_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1252683_1253091_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1253087_1253888_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1253962_1254667_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1254698_1255493_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1255489_1256440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1256538_1257489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1257587_1258022_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1258104_1260441_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1260632_1261649_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1268554	1334551	4134432	tRNA,transposase	Agrobacterium_phage(20.0%)	50	NA	NA
WP_005012067.1|1268554_1269505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931090.1|1269867_1273329_-	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_003819741.1|1273464_1273950_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_003819740.1|1273930_1274182_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_010931089.1|1274178_1274670_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_010931088.1|1274666_1275188_+	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931087.1|1275194_1276400_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931086.1|1276544_1277642_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931085.1|1277652_1278759_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1278893_1279844_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1279946_1280531_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1280600_1282022_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1282129_1283476_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010931082.1|1283514_1285149_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1285192_1285531_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1285555_1285930_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1289042_1289924_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1290031_1291660_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1291701_1293219_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1293313_1294258_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1295439_1296342_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1296338_1297604_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1297648_1298194_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1298227_1298914_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1298885_1299815_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1299986_1300976_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1301040_1301325_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1301340_1302105_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1302101_1302608_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_010929591.1|1303769_1304720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1304807_1306460_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1306470_1307259_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1307258_1307729_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1307803_1309117_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1309170_1309776_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1310092_1311043_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1311039_1311990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1312250_1313279_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1313358_1314657_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1314653_1315235_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1315547_1319594_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1319834_1327496_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1327492_1328443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1329582_1330056_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1330195_1330816_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1330951_1331752_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1331806_1332898_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1332919_1333363_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1333391_1334024_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1334134_1334551_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1362918	1420129	4134432	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1362918_1363869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1367615_1368227_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1368449_1369910_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1370006_1371599_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1371952_1372210_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1372211_1373552_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1373647_1374337_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1374349_1375780_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1377504_1378326_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1378336_1379908_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1379936_1380914_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1380940_1381744_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1381740_1382535_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1382542_1383778_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1383770_1384205_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1384954_1385905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1386526_1388254_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1388365_1389724_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1390016_1390967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1391007_1392078_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1392100_1392979_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1393150_1394122_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1394284_1395127_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1395288_1395969_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1395962_1397132_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1397128_1398160_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1398203_1399445_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1399479_1401012_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1401092_1401716_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1401746_1402358_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1402393_1402864_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1403295_1404300_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1404336_1405851_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1405854_1406814_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1406842_1407646_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1407647_1409282_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1409365_1410427_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1410625_1410895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1410898_1411423_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1411838_1412789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1412785_1413820_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1413928_1414567_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1414861_1415089_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1415211_1415925_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1416169_1417120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1417223_1417505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1417619_1419068_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1419178_1420129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1510362	1563542	4134432	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1510362_1511313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1511479_1511833_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1511845_1512208_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1512249_1512675_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1512877_1514134_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1514332_1515313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1515462_1516704_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1516802_1517753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1517761_1518457_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1521278_1521878_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1521888_1524054_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1524077_1525862_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1525861_1525951_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1526645_1526918_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1526917_1528984_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1528980_1529931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1530046_1530379_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1530375_1531062_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1531048_1532008_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1532049_1534410_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1534409_1535042_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1535143_1536484_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1536530_1537886_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1538011_1538656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1538600_1538918_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1539190_1539706_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1539799_1539961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1539976_1540732_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1541070_1541277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1541284_1541944_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1542238_1544443_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1544553_1545777_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1545899_1546874_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1546941_1548135_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1548149_1548950_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1548946_1550803_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1550799_1551405_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1551423_1552809_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1553534_1554761_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1554849_1555632_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1555730_1556681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1556707_1557481_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1557492_1558734_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1560515_1561466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1561497_1562595_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1562591_1563542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1743684	1807262	4134432	transposase,protease	Klebsiella_phage(11.11%)	48	NA	NA
WP_005012808.1|1743684_1744635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1751113_1753861_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1753881_1754505_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1754516_1754987_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1754998_1755385_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1755446_1756040_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1756030_1756942_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930862.1|1756957_1758298_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1758365_1759097_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1759251_1760772_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_023853659.1|1760844_1762188_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1762222_1763548_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1763729_1764662_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1764672_1766166_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1766162_1767086_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1767088_1768351_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1768370_1769384_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1769456_1769747_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1769776_1771051_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010931070.1|1771193_1772144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1772140_1773778_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1773782_1774622_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930849.1|1774618_1775635_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1775742_1777317_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1777736_1779281_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1779385_1780453_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1780471_1782058_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1782054_1783245_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1784817_1785306_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1785365_1786223_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1786285_1787236_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1787298_1788288_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1788362_1789244_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1790301_1791153_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1791169_1791739_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930839.1|1791769_1792633_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1792792_1793869_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1793933_1795631_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1795647_1796478_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1796506_1797529_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1798058_1799009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1799005_1800328_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1800428_1800746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1800879_1802193_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1802223_1803861_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1804484_1804961_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013747.1|1805262_1806213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1806311_1807262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	1937926	2003129	4134432	tRNA,transposase	Tupanvirus(25.0%)	54	NA	NA
WP_010930630.1|1937926_1939387_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1939406_1940051_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1940087_1941053_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1941151_1942102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1942231_1943197_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1943296_1944562_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1944955_1945972_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|1946315_1946816_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|1946857_1947172_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|1947181_1948123_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|1948119_1948644_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|1948646_1949915_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|1949943_1950927_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|1950923_1951733_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|1951729_1952533_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|1952547_1953315_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|1953402_1954041_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|1954045_1954999_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|1955110_1956235_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|1957872_1958700_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|1958696_1959500_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|1959496_1960588_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|1960994_1962023_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|1962181_1962886_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|1962894_1965015_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_076879641.1|1965015_1966041_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|1966040_1966433_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|1966436_1966913_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|1966926_1967262_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|1967268_1967718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|1967925_1968225_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|1968277_1969390_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|1969394_1970033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|1970013_1971273_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|1971276_1973382_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|1973387_1975373_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|1975581_1975818_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|1976162_1976648_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|1977015_1977966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1978064_1979015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930653.1|1979061_1980270_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930654.1|1980361_1982311_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930655.1|1982307_1983084_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
WP_010930656.1|1983080_1983851_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
WP_010930657.1|1986294_1986816_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930658.1|1986892_1988044_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_050483694.1|1988395_1989097_+	Asp/Glu racemase	NA	NA	NA	NA	NA
WP_010929892.1|1989963_1990995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929893.1|1991010_1991628_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010930525.1|1991819_1992836_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_061363663.1|1994909_1996316_+	ferric reductase-like transmembrane domain-containing protein	NA	NA	NA	NA	NA
WP_010930660.1|1996326_1998435_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930661.1|1999189_2000155_+	Bug family tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853569.1|2001860_2003129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2102976	2176189	4134432	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|2102976_2103927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2104378_2105380_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2105552_2106410_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2106406_2107669_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2107769_2108144_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2108216_2109404_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2109488_2110259_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2110372_2111137_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2111087_2112389_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2112385_2113192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2114936_2115908_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2116064_2116577_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2116735_2117710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2118710_2119505_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2119530_2120337_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2120447_2121038_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2121048_2122227_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2122329_2122704_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2122956_2124288_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2124354_2127585_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2129075_2129822_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2129906_2130368_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2130405_2131464_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2131426_2133256_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2133295_2133868_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2135292_2136114_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2136432_2137755_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2138114_2138750_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2138709_2139660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2140530_2141403_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2141480_2142620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2142978_2144235_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2144240_2144768_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2144772_2145591_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2145590_2146313_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2146334_2146649_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2146666_2147815_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2147845_2148721_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2148717_2150037_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2150109_2151306_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2151316_2152804_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2155398_2156298_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2156435_2157401_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930892.1|2157499_2158450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2158671_2159622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2159618_2159921_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2160080_2160485_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2160477_2161704_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2161700_2162147_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2162216_2162999_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2163040_2164546_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2164831_2165665_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2167102_2167924_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2167942_2168797_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2168800_2169772_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2170456_2170633_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2171118_2172069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2173206_2173503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2173677_2175030_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2175172_2176189_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2189395	2233718	4134432	transposase	Bacillus_phage(25.0%)	44	NA	NA
WP_010929577.1|2189395_2190346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2190998_2191949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2192032_2193850_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2193923_2194571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2194583_2195513_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2195682_2196147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2196394_2197075_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2197123_2198815_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2198830_2199382_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2199378_2199750_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2199862_2200699_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2200709_2201234_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2201331_2201511_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2201640_2202615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2202745_2203102_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2203091_2203967_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2204065_2204950_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2204971_2206267_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2207215_2207866_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2207953_2209474_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2209731_2211597_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2212642_2213593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2213610_2213751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2214565_2214925_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2214912_2216349_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2216345_2216999_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2216995_2218189_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2218292_2219567_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2219563_2220514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2220680_2221655_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2221651_2221795_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2223416_2224079_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2224081_2224258_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2224254_2225193_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2225284_2226775_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2226860_2227013_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2227026_2227266_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2227361_2228105_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2228137_2228638_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2228700_2229660_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2229656_2230418_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2230433_2231519_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2231718_2232669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069025.1|2232767_2233718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2299143	2355429	4134432	transposase,protease	Lake_Baikal_phage(25.0%)	51	NA	NA
WP_010929577.1|2299143_2300094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2300294_2301104_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2301229_2302180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2302176_2303070_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2303194_2303389_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2303388_2303730_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2303739_2305602_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2305731_2306244_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2306246_2306570_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2306571_2306982_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2307019_2308231_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2308248_2308761_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2308976_2309468_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2309720_2311757_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2311834_2313037_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2313165_2313816_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2315373_2316324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2316894_2317107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2317124_2317856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2317890_2318532_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2318524_2319193_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2321405_2322182_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2322203_2323361_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2323357_2323789_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2323785_2324589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2324602_2325004_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2325070_2326042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2326107_2327331_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2327558_2328509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2328632_2331086_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2331274_2332579_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2332683_2333337_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2333339_2334650_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2334846_2335407_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2335518_2335719_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2336064_2336631_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2336714_2336918_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2337224_2337545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2337586_2337868_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2337942_2339199_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2339581_2339911_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2341481_2342303_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2342302_2343442_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2343448_2344345_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2344341_2346267_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2346626_2349239_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2349291_2351592_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2351588_2352797_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2353058_2353433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931359.1|2353429_2354380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2354478_2355429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2358536	2425691	4134432	tRNA,transposase	Klosneuvirus(13.33%)	59	NA	NA
WP_010930542.1|2358536_2361398_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2361400_2361907_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2362011_2363220_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2363221_2364160_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2364321_2364795_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2364791_2365742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2365852_2366293_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2366421_2367651_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2367689_2368511_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2368564_2369716_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2369807_2370296_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2372846_2375396_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2375466_2378040_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2378305_2378506_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2378537_2378699_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2378756_2379095_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2379243_2380194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2380968_2381637_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2381618_2383634_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2383816_2384566_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2384578_2385442_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2385445_2386861_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2386994_2387723_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2387861_2388062_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2388237_2388636_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2388659_2390060_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2390178_2390931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2391219_2391819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2391923_2392703_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2392699_2393584_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2393601_2394381_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2394365_2395124_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2395249_2395897_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2396164_2397181_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2397278_2398319_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2398453_2399746_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2401105_2401489_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2401506_2402094_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2402131_2403082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2404066_2404840_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2404836_2405835_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2405919_2406696_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2406851_2408456_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2408836_2409961_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2410087_2410711_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2410707_2412609_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2412657_2413452_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2413464_2414466_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2414462_2414969_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2414961_2415810_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2415907_2416450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2416493_2417444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2417599_2417926_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2417922_2418207_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2418203_2418683_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2418679_2420308_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2420304_2420649_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2420648_2423582_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2424740_2425691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2455300	2526454	4134432	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_010929591.1|2455300_2456251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2456803_2458429_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2458478_2459513_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2459515_2460862_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2460858_2462373_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2462363_2463374_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2463847_2464789_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2464797_2465766_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2467305_2468274_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2468451_2469441_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2469487_2470246_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2470435_2471173_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2471271_2472222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2472406_2473189_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2473182_2473884_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2474123_2474726_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2476052_2477003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2476999_2478556_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2478548_2479322_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2479380_2480331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2480412_2481588_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2481601_2483659_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2483655_2484681_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2484692_2485982_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2486004_2487102_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2487098_2487989_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2487985_2490070_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2490101_2491271_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2491312_2492053_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2492052_2492823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2493147_2493315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2493678_2494464_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2494490_2496575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2496742_2498698_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2499021_2499522_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2499620_2501147_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2501284_2502172_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2502186_2503140_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2503191_2505282_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2505297_2505684_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2508377_2509181_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2510474_2511377_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2511441_2512218_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2512539_2513589_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2513712_2515383_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2515387_2516182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2516280_2517231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2517250_2518156_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2518233_2518932_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2519091_2520036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2520045_2521533_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2521532_2522600_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2522663_2524076_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2524261_2525482_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2525503_2526454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2592062	2650306	4134432	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2592062_2593013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2593492_2594149_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2594163_2595831_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2595833_2596463_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2596674_2597769_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2597913_2598726_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2598729_2600433_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2600483_2601614_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2601800_2602877_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2602958_2603609_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2603623_2605027_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2605310_2606129_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2606125_2606830_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2607729_2608845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2608878_2609253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2609275_2610433_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2610445_2610679_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2611313_2614283_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2614297_2614507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930374.1|2614658_2615288_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2615284_2617375_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2617398_2618079_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2618075_2618636_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2618642_2619740_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2619892_2620486_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2620482_2621775_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2621788_2622331_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2622340_2623177_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2623210_2624272_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2624313_2625366_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2625381_2625684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2625825_2626776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2626954_2628649_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2628645_2629731_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2629778_2630678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2630688_2631333_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2632354_2635597_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2635607_2636762_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2636988_2637951_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2638049_2639000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2639098_2640049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2640058_2640748_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2640807_2641245_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2641290_2642184_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2642231_2643404_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2643400_2644555_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2644751_2645102_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2645091_2645526_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_005015810.1|2645542_2646493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2646640_2647108_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2647088_2648246_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2648311_2649238_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2649355_2650306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2692586	2756028	4134432	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
WP_005012067.1|2692586_2693537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2693906_2694479_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2694481_2695492_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2695484_2695985_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2695995_2696337_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2696348_2697140_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2697156_2697426_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2697448_2698237_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2698283_2699300_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2699516_2700959_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2701137_2702757_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2702877_2704698_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2704776_2706309_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2706342_2707989_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2708058_2709081_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2709098_2710232_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2710234_2710924_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2710923_2711709_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2711752_2712517_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2712555_2713977_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2714042_2714747_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2714794_2715214_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2715226_2715634_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2715817_2716528_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2716654_2716945_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2716962_2717445_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2721950_2723105_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2723410_2724427_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2724673_2725462_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2725528_2726209_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2726205_2726976_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010929956.1|2727074_2728025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|2728123_2729074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2729129_2730047_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2730057_2731236_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2731255_2732251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2733839_2734448_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2734435_2735476_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2735493_2736456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2736452_2737646_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2737642_2738440_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2738465_2739452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2739470_2741510_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2741711_2742392_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2742405_2743317_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2743313_2743892_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2744030_2744936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2744943_2748363_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2748350_2750951_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2751906_2752539_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077069027.1|2752932_2753691_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2753687_2754890_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2755077_2756028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	2942530	3094164	4134432	tRNA,transposase,protease,holin	uncultured_Mediterranean_phage(15.79%)	119	NA	NA
WP_010929956.1|2942530_2943481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2943579_2944461_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2944538_2945918_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2945956_2946802_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2946817_2947162_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2947164_2947701_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2947873_2948449_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2948551_2949289_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2949356_2950994_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2951101_2951857_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2951844_2952807_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2952908_2953709_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2953770_2955846_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2956010_2958386_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2958466_2959822_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2961300_2962023_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2962077_2963061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2963190_2964141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2964137_2965040_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2965127_2965886_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2965898_2966990_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2967087_2968515_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2968744_2969959_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2970004_2972875_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2975285_2975774_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2975899_2978596_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2978750_2981033_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2981207_2981831_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2981929_2982880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2982926_2983481_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2983548_2984394_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2984463_2985432_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2985431_2986295_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2989127_2993054_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2993789_2997020_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2997301_2998129_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2998162_2998858_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2998850_3000131_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|3000140_3001118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|3001099_3002800_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|3002902_3004006_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|3004036_3004792_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|3004798_3006319_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|3006361_3006664_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|3006660_3007293_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|3007371_3009237_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|3009233_3010028_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|3010056_3011172_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|3012076_3012955_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|3012954_3013779_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|3013946_3014897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|3015109_3017959_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|3017940_3018669_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930181.1|3018809_3020273_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|3020269_3020641_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|3020658_3021972_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|3022008_3022467_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|3022579_3023530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3023628_3024579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|3024575_3025589_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|3025728_3026715_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|3027073_3027781_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|3028361_3029312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|3029463_3030066_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|3030084_3030717_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|3030761_3031013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|3030954_3032841_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|3032859_3033702_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|3033698_3035057_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|3035277_3036072_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|3036302_3037796_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|3038031_3040113_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|3040307_3041348_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|3041482_3042499_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|3042520_3043378_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|3043422_3044199_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_157734659.1|3044411_3044549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3044566_3045517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|3045543_3046008_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|3047214_3049503_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|3049619_3050492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|3050534_3051689_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|3051723_3052554_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|3052637_3054182_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|3054224_3054584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|3054585_3054999_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|3055039_3055357_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|3055441_3056158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|3056421_3057843_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010930159.1|3057909_3060642_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930320.1|3060974_3061991_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|3062326_3062968_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3063058_3064495_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3064652_3065726_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3065722_3066859_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3067003_3067348_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3067414_3069295_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3069344_3070280_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3070612_3071629_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3072566_3073994_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3073990_3075013_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3075002_3075476_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3075616_3076504_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3076500_3078144_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3078140_3079190_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930147.1|3079978_3080995_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3081094_3081727_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3081735_3082125_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3082177_3083230_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3084093_3085800_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3085873_3086374_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3086388_3088446_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3088472_3088766_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3088867_3089815_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3089827_3090703_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3090823_3091384_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3091418_3091742_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3092177_3092915_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3093213_3094164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3115115	3187609	4134432	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3115115_3116066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3116108_3117284_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3117505_3119296_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3119308_3120970_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3120982_3123688_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3123980_3125735_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3125731_3126358_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3126354_3127206_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3127281_3129396_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3129582_3130197_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3130342_3130594_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3130663_3132046_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3132042_3135222_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3136029_3136947_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3136998_3137730_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3137789_3138362_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3139870_3140887_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3141024_3142074_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3142178_3143129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3143224_3143950_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3144160_3144541_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3144846_3145719_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3145726_3146107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3146260_3147535_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3149022_3149931_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3150728_3151793_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3153629_3154631_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3154853_3155495_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3155577_3157404_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3157647_3158577_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3158576_3159326_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3159397_3160312_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3160331_3161477_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3161537_3162449_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010929591.1|3162529_3163480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3163578_3164163_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3164197_3165187_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3165183_3166125_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3166121_3167342_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3167384_3167699_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3167890_3168250_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3168251_3169967_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3170154_3170826_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3170840_3172169_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3172165_3173065_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3173151_3174237_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3174229_3175363_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3175362_3178044_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3178414_3178996_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3179121_3179847_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3179843_3180521_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3180736_3181918_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3182690_3182873_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3182902_3183853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3183982_3184375_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3184651_3185563_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3185687_3186662_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3186658_3187609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3201116	3254642	4134432	transposase,holin	Bacillus_phage(33.33%)	43	NA	NA
WP_010930066.1|3201116_3202067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3202179_3202431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3202936_3204055_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3204174_3204387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3204546_3204768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3204820_3205771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3206947_3208318_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3208350_3209142_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3209154_3210210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3210235_3211111_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3211216_3211465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3211499_3212954_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3212950_3213472_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3213500_3214853_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930056.1|3220117_3221419_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3221433_3222150_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3222431_3223112_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3223123_3223291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3223399_3223546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3223639_3224299_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3224697_3226530_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3226526_3227477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3228640_3230356_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3230366_3230858_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3230930_3231947_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3232114_3232894_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3232912_3233440_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3233733_3234003_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3234093_3236253_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3236373_3237093_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3237089_3238040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3238180_3239398_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3239391_3240003_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3240636_3241614_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3241757_3242504_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3242525_3242972_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3243759_3245991_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3246013_3246814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3247095_3248328_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3248438_3249428_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3249458_3250847_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3252445_3253429_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3253625_3254642_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3277665	3327736	4134432	transposase,holin	Vibrio_phage(25.0%)	44	NA	NA
WP_005013747.1|3277665_3278616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3278698_3280657_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3280684_3281386_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3281532_3282348_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3282344_3283160_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3283176_3283980_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3283963_3284398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3284394_3284829_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3284830_3285385_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3285402_3286353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3286665_3287823_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3288011_3288371_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3288407_3288884_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3288958_3289582_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3289584_3290841_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3290886_3291381_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3291377_3292745_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3292760_3295088_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3295087_3296161_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3296182_3296671_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3296688_3297336_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3297332_3297641_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3297658_3299671_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3299667_3301170_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_003813916.1|3301180_3302665_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3302681_3303011_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3303311_3305543_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3305754_3308025_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3308137_3308656_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3308665_3309442_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3309438_3311229_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3311288_3312269_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3312406_3313324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3313452_3314313_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3314348_3317804_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3317833_3318517_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3318513_3319002_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3319100_3320051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3320047_3321067_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3321076_3323785_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3323932_3324589_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3324687_3325638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3325736_3326687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486111.1|3326785_3327736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3379329	3422236	4134432	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3379329_3380280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3380381_3380810_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3380882_3383078_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3383299_3384250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3384209_3384734_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3384865_3385837_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3385956_3388401_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3388416_3389007_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3389250_3390201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3390358_3391624_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3391657_3392755_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3393409_3394360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3394360_3394930_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3394997_3395813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3395979_3397599_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3397677_3398619_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3398618_3399503_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3399506_3401159_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3401198_3402596_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3402637_3404017_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3404056_3404275_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3404615_3405488_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3405647_3406598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3407329_3407707_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3407691_3408393_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3408536_3409229_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3409228_3410332_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3410441_3412814_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3412810_3414370_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3414394_3415192_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3415223_3416369_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3416473_3417916_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3417918_3419148_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3421285_3422236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3431528	3465260	4134432	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3431528_3433259_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3433324_3433897_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3433877_3434564_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3434919_3435591_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3435919_3436141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3436140_3436422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3436418_3436934_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3436933_3437485_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3437463_3437706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3437710_3438523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3438522_3438786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3438826_3439024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3439004_3439421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3439425_3443382_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3443374_3443764_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3443760_3444294_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3444361_3444721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3444730_3447343_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3447368_3447659_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3447676_3448006_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3448015_3448534_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3448788_3449289_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3449296_3449719_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3449715_3450114_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3450110_3450506_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3450505_3450706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3450707_3451190_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3451252_3451504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3452178_3453129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3454606_3455209_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3455331_3455574_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3455579_3456635_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3456663_3458082_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3458084_3459362_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3459348_3459834_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3460473_3461424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3461680_3462370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3462362_3462614_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3463168_3463780_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3463851_3464058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3464309_3465260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3476479	3524896	4134432	tRNA,transposase,protease	Bacillus_phage(40.0%)	46	NA	NA
WP_010930800.1|3476479_3477430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3477506_3479327_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3479331_3480405_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3480527_3481496_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3481569_3482481_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3482499_3483072_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3483152_3483701_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3483700_3485290_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3485359_3485599_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3485639_3486665_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3486730_3487912_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3488008_3488461_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3488470_3489811_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3490127_3491165_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3491546_3491906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3491989_3492931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3493005_3493956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3494249_3495344_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3495425_3496307_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3496328_3497168_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3497243_3498761_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3498857_3499958_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3499974_3500397_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3500419_3500632_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3500678_3501599_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3501781_3502531_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3502533_3502863_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3503069_3504503_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3504514_3504898_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3504959_3505760_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3505858_3506809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820995.1|3506826_3507228_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|3507361_3508255_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|3508251_3508833_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|3509627_3510362_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|3510402_3511452_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|3511599_3512178_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|3512564_3513542_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|3513635_3518030_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|3518230_3519079_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|3519237_3520050_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|3520105_3521056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927005.1|3521154_3521757_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3521814_3522198_-	membrane protein	NA	NA	NA	NA	NA
WP_010929577.1|3522896_3523847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3523945_3524896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3668527	3723501	4134432	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3668527_3669478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3669594_3670662_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3670737_3673866_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3674373_3675339_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3675341_3676013_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3676169_3677129_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3677136_3677799_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3677795_3678746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3678867_3680121_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3680098_3681061_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3681192_3681687_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3681686_3682919_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3683664_3683946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3683932_3684919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3685062_3685467_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3685608_3688995_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3689025_3690489_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3690509_3692126_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3692211_3692871_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3692900_3693341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3693851_3694055_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3694230_3695136_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3695234_3696185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3696283_3697234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3699015_3700209_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3700274_3701303_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3701329_3702502_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3702627_3703605_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3703615_3704587_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3704653_3705439_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3705431_3706664_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3706859_3707615_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3707725_3708244_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3710032_3711433_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3711532_3711877_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3711965_3712436_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3712846_3713245_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3713376_3714327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3716771_3717506_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3717915_3718095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3718285_3719599_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3719614_3721126_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3721122_3722328_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3722523_3723501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3813314	3867509	4134432	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3813314_3814265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3814387_3815116_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3815212_3816391_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3816387_3817221_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3817257_3817998_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3818117_3819293_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3819289_3820243_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3820256_3820658_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3820650_3821256_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3821343_3821508_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3821624_3822473_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3822469_3823123_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3823139_3824423_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3824662_3826288_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3826381_3826783_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3826807_3827242_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3827243_3828893_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3828933_3830103_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3830105_3830969_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3834332_3835037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3835030_3835825_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3835821_3836787_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3836790_3837711_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3837807_3838971_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3839193_3840084_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3840087_3840591_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3840633_3841632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3841628_3842579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3842667_3842955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3843146_3844097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3844156_3844717_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3846219_3847101_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3847214_3848417_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3848545_3850405_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3850482_3851292_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3851362_3852364_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3852395_3853256_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3853455_3854460_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3854456_3856043_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3856051_3856978_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3857000_3857627_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3857725_3858676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3858672_3859809_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3859862_3860639_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3860663_3861122_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3861261_3861903_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3861967_3863350_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3863369_3864224_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3864382_3864994_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3865003_3865453_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3865971_3866112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3866119_3866281_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3866558_3867509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3878125	3939014	4134432	tRNA,transposase,protease	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_005012067.1|3878125_3879076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3879806_3880787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3880800_3881925_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3881932_3883687_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3883793_3884693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3884757_3885741_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3885876_3886857_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3886873_3888265_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3888416_3888953_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3888883_3890269_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3890411_3891050_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3891136_3893026_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3893022_3893964_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3894069_3895119_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3895371_3896073_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3896069_3896768_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3896768_3898124_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3898120_3898612_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3898630_3899587_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3900997_3903100_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3903270_3904314_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3904357_3905101_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3906122_3906533_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3907482_3908280_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3908378_3909329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3909325_3910276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3910362_3911313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3911427_3912429_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3912519_3913086_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3913404_3915318_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3915359_3916790_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3916902_3918315_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3918331_3919027_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3919245_3920196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3920220_3921120_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3921274_3921823_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3921861_3922581_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3922652_3925595_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|3926188_3928984_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3929441_3930374_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3930485_3931835_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3931866_3932592_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3932642_3933494_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3933623_3934310_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3934309_3934954_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3935010_3935286_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3935311_3935608_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3935653_3936433_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3936438_3937479_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3937583_3937907_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3938063_3939014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	3969409	4037233	4134432	tRNA,transposase	Bacillus_phage(22.22%)	58	NA	NA
WP_010929591.1|3969409_3970360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815898.1|3970566_3971043_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|3971124_3971808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|3971832_3973440_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|3973488_3974118_-	LysE family transporter	NA	NA	NA	NA	NA
WP_010929660.1|3974151_3975582_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_003815889.1|3975864_3976494_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|3976471_3977374_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|3978817_3979768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|3980326_3981889_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|3981885_3982521_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929656.1|3982749_3983772_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|3983937_3984714_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|3984877_3985576_+	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|3985587_3986898_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|3986953_3987631_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|3987627_3989025_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|3989130_3989592_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_023853237.1|3989696_3990896_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929650.1|3990946_3991822_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|3991923_3992355_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|3992379_3993108_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|3993104_3994085_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|3994851_3995634_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929647.1|3995752_3996724_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247545.1|3996795_3997554_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_019247546.1|3997572_3998016_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_003817676.1|3998036_3998849_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|3998854_3999787_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|3999770_4000994_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|4001081_4001864_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|4001916_4005879_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|4006625_4008134_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_005012067.1|4008552_4009503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|4010769_4011648_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|4011675_4011978_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|4012070_4013510_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|4013508_4014156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|4014582_4016283_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|4016373_4017627_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|4018520_4018910_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|4018906_4019917_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|4020753_4021587_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|4021583_4022489_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|4022587_4023538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|4023638_4024460_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|4024565_4025606_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|4025648_4026941_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|4026951_4027827_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|4027823_4028624_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010929632.1|4028699_4029716_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|4029998_4030316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|4030406_4030754_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|4031041_4032724_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|4032733_4033417_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|4033478_4034108_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|4034189_4035383_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_077069028.1|4036282_4037233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013076	Bordetella pertussis strain B227 chromosome, complete genome	4134432	4065056	4100997	4134432	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|4065056_4066001_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4066075_4067026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|4067022_4068432_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010929606.1|4068537_4069380_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|4069381_4069633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|4069721_4070303_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|4070334_4070955_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|4071116_4073024_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|4074216_4074531_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|4074624_4075575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|4075996_4077178_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|4077807_4079079_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|4079113_4080172_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929600.1|4080290_4080593_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|4080605_4081187_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248755.1|4081243_4082218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929597.1|4082641_4083583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047122776.1|4083772_4084186_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|4084185_4085412_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|4086212_4087163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|4087256_4088156_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|4088235_4088997_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|4088993_4089683_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|4089707_4090298_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|4090303_4091038_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|4092269_4093526_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|4093568_4094519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|4094654_4095269_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|4095265_4096513_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|4097682_4098576_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003815265.1|4098703_4098940_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|4098911_4099460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|4100046_4100997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
