The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	27282	70036	4102201	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	77634	136108	4102201	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	164893	225404	4102201	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	233336	286924	4102201	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	390857	448366	4102201	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	589371	650561	4102201	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077123334.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	655885	702076	4102201	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690807_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	708242	762172	4102201	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	884761	952745	4102201	transposase	Bacillus_phage(33.33%)	55	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905758_905965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912873_914706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917984_919286_-	phospholipase	NA	NA	NA	NA	NA
WP_010930057.1|924550_925903_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925931_926453_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926449_927904_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927938_928187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928292_929168_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929193_930249_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930261_931053_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931085_932456_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|933632_934583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934635_934857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935016_935229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935348_936467_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936563_936779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936972_937224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937336_938287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938283_938667_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938721_940536_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940685_941513_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941558_942539_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942535_942748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942744_943926_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944089_944824_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944825_947438_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947573_949487_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950102_950513_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950610_951696_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929591.1|951794_952745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	996274	1068792	4102201	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|996274_997225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997329_998379_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998516_999533_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001041_1001614_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001673_1002405_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002456_1003374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1007358_1008741_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008810_1009062_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009207_1009822_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010008_1012069_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012198_1013050_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013046_1013673_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013669_1015424_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015716_1018422_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018434_1020096_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020108_1021899_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022120_1023296_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1023338_1024289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024387_1025128_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025322_1027359_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027376_1028387_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028504_1029698_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029727_1030501_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030497_1031688_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031713_1032652_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032648_1034997_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035151_1035793_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037122_1037275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037306_1037855_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037873_1038359_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038536_1039475_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039477_1039795_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039840_1040785_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042465_1043116_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043169_1043505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043501_1044362_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044378_1044660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044733_1044997_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045240_1046191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046489_1047227_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047662_1047986_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048020_1048581_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048701_1049577_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049589_1050537_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050638_1050932_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050958_1053016_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053030_1053531_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053604_1055311_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056174_1057227_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057279_1057669_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057677_1058310_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1058409_1059426_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060256_1061264_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061260_1062904_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062900_1063788_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063928_1064402_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064391_1065414_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065410_1066838_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067775_1068792_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1072545	1133572	4102201	tRNA,transposase,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072545_1073682_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073678_1074752_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074909_1076346_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076436_1077078_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930525.1|1077413_1078430_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1078762_1081510_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1081576_1082998_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1083261_1083978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1084062_1084380_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1084420_1084834_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1084835_1085195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1085237_1086782_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1086865_1087696_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1087730_1088885_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1088927_1089800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1089916_1092205_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1093411_1093876_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1093902_1094853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734659.1|1094870_1095008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1095220_1095997_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1096041_1096899_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1096920_1097937_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1098071_1099112_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1099306_1101388_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1101623_1103117_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1103347_1104142_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1104362_1105721_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1105717_1106560_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1106578_1108465_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1108406_1108658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1108702_1109335_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1109353_1109956_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1110107_1111058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1111638_1112346_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1112704_1113691_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1113830_1114844_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1114840_1115791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1115903_1116362_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1116398_1117712_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1117729_1118101_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1118097_1119561_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1119701_1120430_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1120411_1123261_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1123473_1124424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1124591_1125416_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1125415_1126294_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1127198_1128314_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1128342_1129137_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1129133_1130999_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1131077_1131710_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1131706_1132009_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1132051_1133572_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1151142	1216730	4102201	tRNA,transposase	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1151142_1152939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1152938_1153907_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1153976_1154822_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1154889_1155444_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1155490_1156441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1156539_1157172_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1157340_1159623_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1159777_1162474_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1162599_1163088_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1165498_1168369_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1168414_1169629_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1169858_1171286_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1171383_1172475_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1172487_1173246_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1173333_1174236_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|1174232_1175183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1175312_1176296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1176350_1177073_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1178551_1179907_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1179987_1182363_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1182527_1184603_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1184664_1185459_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1185566_1186529_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1186516_1187272_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1187379_1189017_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1189084_1189822_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1189924_1190500_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1190672_1191209_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1191241_1191556_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1191571_1192417_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1192455_1193835_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1193912_1194794_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1194892_1195843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1195839_1196250_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1196357_1197212_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1197204_1198167_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1198212_1199337_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1199442_1200321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1200445_1201225_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1201378_1202800_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1203234_1204932_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1205158_1206100_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1206426_1207173_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1207180_1208107_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1208228_1209146_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1209185_1210139_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1210163_1210742_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1212415_1213024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1213101_1213455_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1213538_1214528_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1214730_1215681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1215779_1216730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1315866	1384353	4102201	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1315866_1316817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1317585_1318224_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1319113_1319560_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1319641_1320343_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1320343_1321111_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1321107_1322346_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1322345_1323272_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1323374_1324490_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1324505_1325456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1325809_1326391_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1326387_1327221_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1327431_1328745_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1328921_1329803_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1329822_1330674_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1330726_1331815_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1331925_1333053_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1333287_1333899_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1333997_1334948_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1335169_1335547_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1335694_1336192_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1336188_1336716_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1336849_1337665_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1337677_1338859_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1338906_1339800_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1339926_1340397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1340522_1341350_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1341378_1342155_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1342151_1342427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1342441_1342906_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1342917_1343619_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1343728_1344229_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1344311_1345490_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1347117_1347453_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1347640_1349089_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1349146_1349491_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1349597_1350137_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1350229_1351180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1351278_1351686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1351918_1352350_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1352531_1352936_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1354172_1354496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1354498_1355386_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1355418_1355844_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1355915_1356269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1356508_1357015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1357053_1358385_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1358444_1359260_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1359256_1360111_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1363173_1365717_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1367083_1368838_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1368834_1370955_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1370959_1373155_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1373151_1376493_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010929588.1|1379295_1380246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1380311_1380491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1380607_1381363_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1381349_1382495_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1383402_1384353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1444844	1500332	4102201	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1444844_1445795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1446996_1447443_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1447435_1448911_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1448907_1449663_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1449655_1450666_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1450655_1452332_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1452644_1452977_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1452990_1453386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1453395_1453722_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1453718_1454045_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1453971_1454994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1454990_1455341_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1455388_1455817_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1455824_1457198_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1457338_1457716_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1457978_1459286_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1459346_1460177_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1460173_1460662_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1460703_1462224_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1462267_1462744_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1463547_1466145_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1466174_1466996_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1467722_1468472_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1468655_1469534_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1469631_1470348_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1470362_1470923_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1471089_1471854_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1471873_1472731_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1472727_1473927_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1473966_1475301_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1475353_1477690_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1477815_1478379_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1478387_1479479_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1479550_1480006_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1480006_1480801_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1480797_1481979_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1481965_1482571_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1482567_1483341_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1483352_1484180_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1484341_1486705_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1486772_1487492_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1487615_1488041_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1488075_1489026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1489143_1490070_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1490135_1491293_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1491273_1491741_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1491888_1492839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1492855_1493290_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1493279_1493630_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1493826_1494981_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1494977_1496150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1496197_1497091_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1497136_1497574_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1497633_1498323_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1498332_1499283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1499381_1500332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1595029	1663115	4102201	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1595029_1595518_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1595635_1596214_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1596319_1596688_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1596786_1597737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1597743_1598856_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1599542_1600745_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1600948_1603609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1603621_1607026_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1607693_1609919_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1609965_1610292_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1610342_1610951_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1611049_1612000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1612069_1612834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1612830_1613367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1613533_1614385_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1614444_1615071_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1615067_1616018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1616116_1617229_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1617218_1618220_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1618325_1619837_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1619833_1621138_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1621249_1621810_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1622077_1622632_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1623087_1623303_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1623557_1626155_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1626151_1627339_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1627997_1628612_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1628700_1629822_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1629839_1630745_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1631637_1632588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1632769_1633522_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1633590_1634250_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1634246_1634975_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1634987_1637267_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1637291_1637495_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1637536_1638169_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1638304_1639222_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1639218_1639932_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1640169_1640940_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1640944_1641544_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1641788_1643279_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1643337_1643622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1644187_1645114_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1645250_1645991_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1646157_1647534_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1647715_1648621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1650272_1652075_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1652192_1652843_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1652941_1653892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1653913_1655134_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1655319_1656732_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1656795_1657863_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1657862_1659350_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1659359_1660304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1660463_1661162_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1661239_1662145_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1662164_1663115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1699064	1754655	4102201	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1699064_1700015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1700073_1700847_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1700839_1702396_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1702392_1703343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1704669_1705272_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1705511_1706213_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1706206_1706989_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1707173_1708124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1708222_1708960_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1709149_1709908_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1709954_1710944_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1711121_1712090_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1713629_1714598_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1714606_1715548_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1716021_1717032_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1717022_1718537_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1718533_1719880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1719882_1720917_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1720966_1722592_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1723144_1724095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1724199_1725147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1725200_1727015_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1727007_1727682_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1727811_1730886_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1730899_1731199_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1731513_1732137_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1732380_1733250_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1733227_1734172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1734257_1735184_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1735296_1736076_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1736066_1737263_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1737293_1738244_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1738465_1739155_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1739219_1739975_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1740026_1741019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1741028_1741982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1742097_1743060_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1744461_1744890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1744886_1745837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1746130_1746853_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1747291_1748479_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1748482_1748833_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1750582_1751554_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1751567_1752281_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1752285_1753203_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1753309_1753606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1753704_1754655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	1999364	2072577	4102201	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|1999364_2000315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2000766_2001768_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2001940_2002798_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2002794_2004057_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2004157_2004532_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2004604_2005792_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2005876_2006647_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2006760_2007525_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2007475_2008777_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2008773_2009580_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2011324_2012296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2012452_2012965_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2013123_2014098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2015098_2015893_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2015918_2016725_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2016835_2017426_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2017436_2018615_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2018717_2019092_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2019344_2020676_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2020742_2023973_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2025463_2026210_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2026294_2026756_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2026793_2027852_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2027814_2029644_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2029683_2030256_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2031680_2032502_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2032820_2034143_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2034502_2035138_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2035097_2036048_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2036918_2037791_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2037868_2039008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2039366_2040623_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2040628_2041156_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2041160_2041979_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2041978_2042701_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2042722_2043037_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2043054_2044203_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2044233_2045109_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2045105_2046425_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2046497_2047694_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2047704_2049192_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2051786_2052686_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2052823_2053789_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2053887_2054838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2055059_2056010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2056006_2056309_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2056468_2056873_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2056865_2058092_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2058088_2058535_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2058604_2059387_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2059428_2060934_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2061219_2062053_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2063490_2064312_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2064330_2065185_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2065188_2066160_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2066844_2067021_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2067506_2068457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2069594_2069891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2070065_2071418_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2071560_2072577_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2085783	2140197	4102201	transposase,protease	Bacillus_phage(12.5%)	53	NA	NA
WP_010929577.1|2085783_2086734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2087386_2088337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2088420_2090238_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2090311_2090959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2090971_2091901_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2092070_2092535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2092782_2093463_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2093511_2095203_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2095218_2095770_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2095766_2096138_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2096250_2097087_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2097097_2097622_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2097719_2097899_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2098028_2099003_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2099133_2099490_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2099479_2100355_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2100453_2101338_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2101359_2102655_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2103603_2104254_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2104341_2105862_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2106119_2107985_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2109030_2109981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2109998_2110139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2110953_2111313_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2111300_2112737_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2112733_2113387_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2113383_2114577_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2114680_2115955_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2115951_2116902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2117068_2118043_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2118039_2118183_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2119804_2120467_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2120469_2120646_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2120642_2121581_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2121672_2123163_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2123248_2123401_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2123414_2123654_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2123749_2124493_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2124501_2125026_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2125124_2126048_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2126044_2126806_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2126821_2127907_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_077123332.1|2128106_2129057_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2129016_2129430_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2129714_2130014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2130423_2132706_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2133171_2133366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2133391_2135422_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2135441_2135654_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2135931_2136471_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2136584_2137880_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2137956_2139114_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2139297_2140197_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2195531	2251816	4102201	transposase,protease	Lake_Baikal_phage(25.0%)	50	NA	NA
WP_010929577.1|2195531_2196482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2196682_2197492_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2197616_2198567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2198563_2199457_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2199581_2199776_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2199775_2200117_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2200126_2201989_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2202118_2202631_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2202633_2202957_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2202958_2203369_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2203406_2204618_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2204635_2205148_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2205363_2205855_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2206107_2208144_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2208221_2209424_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2209552_2210203_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2211760_2212711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2213281_2213494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2213511_2214243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2214277_2214919_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930564.1|2217792_2218569_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2218590_2219748_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2219744_2220176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2220172_2220970_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2220989_2221391_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2221457_2222429_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2222494_2223718_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2223945_2224896_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2225019_2227473_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2227661_2228966_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2229070_2229724_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2229726_2231037_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2231215_2231794_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2231905_2232106_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2232451_2233018_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2233101_2233305_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2233611_2233932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2233973_2234255_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2234329_2235586_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2235968_2236298_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2237868_2238690_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2238689_2239829_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2239835_2240732_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2240746_2242654_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2243013_2245626_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2245678_2247979_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2247975_2249184_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2249445_2249820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931359.1|2249816_2250767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2250865_2251816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2529934	2595655	4102201	tRNA,transposase,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2529934_2531878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2531874_2532795_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2532814_2533402_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2533394_2534285_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2534281_2535043_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2535048_2535933_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2535955_2537749_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2537879_2539367_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2539404_2540463_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2540462_2540963_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2540975_2541575_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2541571_2542072_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2542073_2543303_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2543492_2543732_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2543914_2544667_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2544668_2545604_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2545685_2546672_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2546671_2547730_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2547786_2547969_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2548020_2548614_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2548722_2549322_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2549318_2550029_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2550030_2550858_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2552674_2553916_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2553927_2554701_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2554727_2555678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2555776_2556559_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2556647_2557874_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2558599_2559985_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2560003_2560609_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2560605_2562462_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2562458_2563259_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2563273_2564467_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2564534_2565509_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2565631_2566855_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2566965_2569170_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2569464_2570124_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2570131_2570338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2570676_2571432_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2571702_2572218_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2572490_2572808_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2572995_2573232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2573522_2574878_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2574924_2576265_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2576366_2576999_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2576998_2579368_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2579400_2580360_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2580346_2581033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2581029_2581362_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2581477_2582428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2582526_2583477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2583473_2585540_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2585539_2585812_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2586506_2586596_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2586595_2588380_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2588403_2590569_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2590579_2591179_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2594000_2594696_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2594704_2595655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2682821	2723490	4102201	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2682821_2683772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2683882_2684065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2684164_2684761_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2684944_2686036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2686535_2686946_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2687004_2687334_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2687351_2689769_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2689781_2690804_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2690878_2691238_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2691253_2691451_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2691786_2692737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2692931_2693381_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2693377_2694328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2694438_2695887_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2696001_2696247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2696386_2697337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2697581_2698295_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2698417_2698645_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2698939_2699578_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2699686_2700721_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2700717_2701668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2702083_2702608_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2702611_2702881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2703079_2704141_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2704224_2705859_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2705860_2706664_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2706692_2707652_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2707655_2709170_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2709206_2710211_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2710642_2711113_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2711148_2711760_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2711790_2712414_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2712494_2714027_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2714061_2715279_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2715346_2716378_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2716374_2717544_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2717537_2718218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2718379_2719222_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2719384_2720356_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2720527_2721406_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2721428_2722499_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2722539_2723490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2778954	2851824	4102201	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2778954_2779371_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2779481_2780114_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2780142_2780586_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2780607_2781699_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2781753_2782554_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2782689_2783310_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2783449_2783923_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2785062_2786013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2786009_2793671_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2793911_2797958_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2798270_2798852_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2798848_2800147_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2800226_2801255_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2801515_2802466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2802462_2803413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2803729_2804335_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2804388_2805702_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2805776_2806247_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2806246_2807035_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2807045_2808698_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2808785_2809736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2810897_2811404_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2811400_2812165_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2812180_2812465_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2812529_2813519_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2813690_2814620_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2814591_2815278_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2815311_2815857_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2815901_2817167_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2817163_2818066_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2819247_2820192_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2820286_2821804_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2821845_2823474_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2823581_2824463_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2827575_2827950_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2827974_2828313_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2828356_2829991_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2830029_2831376_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2831483_2832905_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2832974_2833559_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2833661_2834612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2834746_2835853_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2835863_2836961_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2837105_2838311_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2838317_2838839_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2838835_2839318_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2839323_2839575_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2839555_2840041_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2840176_2843638_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2843655_2844540_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2844549_2844981_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2845227_2845731_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2845808_2847209_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2847283_2848159_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2848155_2849163_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2849630_2849936_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2850026_2850617_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2850807_2851824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2854967	2921778	4102201	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_010929956.1|2854967_2855918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2856016_2856967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2856963_2857758_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2857789_2858494_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2858568_2859369_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2859365_2859773_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2859769_2860411_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2860403_2862404_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2863664_2864996_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2864992_2865943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2867649_2867916_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2868623_2868962_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2873515_2874118_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2874214_2875504_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2875561_2876293_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2876289_2877093_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2877089_2878178_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2878174_2879104_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2879252_2880398_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2880419_2881370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2881700_2885522_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2885678_2886347_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2886351_2888025_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2888043_2889363_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2889367_2891683_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2891738_2893907_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2893903_2899084_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2899182_2899497_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2899724_2899970_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2900064_2900583_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2900682_2901888_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2902003_2903401_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2903517_2904096_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2904168_2905560_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2905727_2906678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2906958_2907579_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2907575_2907989_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2907985_2909029_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2909084_2909273_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2909282_2910047_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2910137_2910794_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2910885_2911644_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2911669_2913271_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2913471_2914476_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2914576_2914840_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2914957_2915734_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2916324_2917275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2919658_2920771_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2920827_2921778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	2952164	2995855	4102201	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2952164_2953115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2953235_2954132_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2956409_2958635_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2958799_2959888_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2959844_2960498_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2960545_2961343_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2961874_2962825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2962905_2964054_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2964110_2965061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2965159_2965465_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2965493_2965928_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2965929_2967174_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2967170_2967881_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2967895_2968807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2969169_2969574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2969570_2970029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2970035_2970944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2970940_2971807_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2971793_2972621_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2972631_2973759_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2974836_2976075_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2976116_2977379_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2977385_2978138_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2978189_2978375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2978650_2979115_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2979146_2979806_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2979950_2982059_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2982055_2983006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2983109_2983730_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2983833_2984574_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2985708_2986833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2986878_2987247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2987488_2988439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2989474_2990017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990402_2991353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2991349_2992258_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2992384_2993221_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2993733_2994843_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2994904_2995855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	3375802	3429543	4102201	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3375802_3376753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3377157_3377802_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3377826_3378411_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3378511_3379129_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3379131_3380847_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3380843_3381152_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3381168_3381786_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3381830_3382133_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3382233_3383088_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3383275_3383500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3383669_3383942_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3384359_3384767_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3385136_3385931_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3386031_3387267_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3387335_3388352_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3388363_3389740_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3389736_3390933_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3390929_3392468_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3392464_3393724_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3395664_3396615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3397381_3398476_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3398468_3399803_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3399756_3400440_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3400465_3401629_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3401625_3402627_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3402626_3403499_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3403495_3404245_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404241_3405033_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3405029_3406169_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3406444_3407230_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407263_3408046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3408049_3408439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3409578_3410442_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3410477_3411566_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3411562_3412513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3412866_3415845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3416771_3417650_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3419598_3420549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3420545_3421013_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3421055_3421826_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3421846_3422647_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3422657_3424067_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3424161_3424947_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3425186_3426203_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3426310_3426703_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3426840_3427521_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3427525_3428497_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3428592_3429543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	3435697	3494997	4102201	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3435697_3437461_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3437572_3438451_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3438563_3439379_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3439382_3439634_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3439718_3440735_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3441065_3441287_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3443647_3444565_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3445062_3446271_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3446350_3447922_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3448039_3448975_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3449163_3450108_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3450675_3456393_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3456398_3457526_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3457581_3458208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|3458479_3459496_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3459591_3460302_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3460298_3461288_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3461383_3463015_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3463017_3463755_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3463910_3464783_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3465132_3466272_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3466268_3466928_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3466999_3467632_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3467661_3468180_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3468190_3469300_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3469346_3470201_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3470202_3471105_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3472327_3473278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3475034_3476024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3476199_3476988_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3476984_3478016_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3478034_3478598_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3478653_3480174_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3480437_3481142_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3481149_3481878_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3481992_3482367_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3482409_3483699_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3483695_3484865_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3484861_3485701_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3485760_3486696_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3486708_3487659_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3487757_3488720_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3488751_3489111_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3489235_3490138_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3490139_3491912_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3491946_3492723_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3494046_3494997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	3509935	3568008	4102201	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3509935_3510886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3511014_3512148_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3512191_3513097_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3513099_3514800_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3514796_3515717_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3515724_3516702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3516760_3517795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3519769_3520006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3520132_3520996_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3521084_3521906_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3521985_3522723_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3522719_3523712_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3523864_3524488_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3524532_3525681_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3528004_3528955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3529295_3530246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530344_3531295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3531591_3532089_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3532131_3533907_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3533914_3534781_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3534787_3535522_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3536691_3537486_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3537775_3538366_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3538399_3539728_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3539802_3540948_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3541059_3542058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3542020_3542455_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3543971_3544856_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3544852_3546058_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3546054_3546915_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3547027_3548818_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3548858_3549503_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3549524_3549833_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3549998_3551285_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3552718_3553669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3555620_3556835_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3556940_3557930_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3557926_3558535_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3558547_3559177_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3559173_3559794_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3559825_3560617_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3561468_3561924_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3561942_3562869_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3562922_3564209_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3565139_3566012_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3566008_3566959_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3567057_3568008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013078	Bordetella pertussis strain C734 chromosome, complete genome	4102201	4001269	4066181	4102201	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4001269_4001755_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001843_4001981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001973_4002954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003220_4004030_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004069_4004750_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004743_4005202_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005213_4005576_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005658_4006342_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006397_4006706_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006724_4007039_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007035_4009510_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009517_4010909_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010905_4011091_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011069_4011771_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011767_4012589_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012569_4013694_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013686_4014706_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4014911_4015802_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016046_4016838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016920_4017295_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017272_4018682_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018674_4020057_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020391_4021996_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4022073_4023045_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023055_4023982_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024372_4025323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025492_4026719_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026918_4027785_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027777_4028740_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028840_4029791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|4029889_4030840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030938_4031889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031885_4033379_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033375_4036483_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036479_4039548_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039544_4040795_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4040975_4041728_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4041769_4042414_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4042422_4043403_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043502_4044246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044328_4044676_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044773_4045616_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045660_4046548_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046574_4046763_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046860_4048318_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048304_4049831_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049849_4050317_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050316_4051339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051459_4052200_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052254_4053355_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053356_4054547_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054666_4055683_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056001_4056673_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056669_4057578_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057789_4058437_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4062297_4063365_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063375_4064185_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064274_4065048_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|4065230_4066181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
