The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	27282	70036	4107422	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	77634	136108	4107422	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	164891	301500	4107422	transposase,tRNA,protease	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176365_176893_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176984_177800_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189528_190002_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211152_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219051_221994_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236366_237164_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238113_238524_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239545_240289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240332_241376_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241546_243649_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245059_246016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246034_246526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246522_247878_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247878_248577_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248573_249275_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249527_250577_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265570_266521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267709_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274124_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277137_278088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278105_278252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278365_278527_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278534_278675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279193_279643_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279652_280264_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280422_281277_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281296_282679_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282743_283385_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283524_283983_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284007_284784_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284837_285974_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285970_286921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287019_287646_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287668_288595_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288603_290190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290186_291191_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291390_292251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292282_293284_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293354_294164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294241_296101_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_077069165.1|296229_297432_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297545_298427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299929_300490_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300549_301500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	390854	448363	4107422	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390854_391805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391941_392859_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392855_393104_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393100_394306_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394378_395374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395396_396617_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396613_397258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398988_399798_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400102_401056_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401154_402138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402064_402766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402814_403585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403581_404760_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404927_406634_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406630_407527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407567_409157_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409206_410199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410267_410867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411327_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412383_413334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413422_414337_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414333_414993_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415082_416006_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416011_416467_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416463_417567_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417525_417795_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417754_419374_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419370_420429_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420558_421053_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421145_422123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422318_423524_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423520_425032_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425047_426361_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426551_426731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427140_427875_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430319_431270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431401_431800_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432210_432681_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432769_433114_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433213_434614_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436402_436921_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437031_437787_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437982_439215_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439207_439993_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440059_441031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441041_442019_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442144_443317_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443343_444372_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444437_445631_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|447412_448363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	589367	650558	4107422	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589367_590318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590814_591684_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591680_592502_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592701_593193_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593211_594285_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594331_595435_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595510_596131_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596151_596661_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596715_596967_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597030_598164_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598171_598558_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598554_601074_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601502_601841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601837_602344_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602405_603206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603316_604258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604351_605887_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607566_609417_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609420_610254_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610253_611195_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611446_612418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612559_614848_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615154_616063_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616117_617083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617157_618819_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618890_619601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619567_619732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619749_620700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621398_621782_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621839_622442_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622459_622861_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622994_623888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623884_624466_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625260_625995_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626035_627085_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627232_627811_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628197_629175_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629268_633663_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633863_634712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634870_635683_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635738_636689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636787_637588_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637649_638033_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638044_639478_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639684_640014_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640016_640766_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640948_641869_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641915_642128_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642150_642573_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642589_643690_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643786_645304_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645379_646219_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646240_647122_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647203_648298_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648591_649542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649616_650558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	655882	702072	4107422	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655882_656908_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656948_657188_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657257_658847_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658846_659395_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659475_660048_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660066_660978_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661051_662020_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662142_663216_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663220_665041_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665117_666068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666156_666492_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666625_667276_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667297_668716_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668785_669541_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669509_670268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670278_671160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671176_671884_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671886_672645_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672854_674597_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674589_675114_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675153_675948_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676115_677189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677287_678238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678489_678696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678767_679379_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679933_680185_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680177_680867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680884_681106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247942.1|682712_683198_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683184_684462_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684464_685883_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685911_686967_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686972_687215_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687337_687940_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688368_689319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689993_690245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690307_690790_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690791_690992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690991_691387_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691383_691782_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691778_692201_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692208_692709_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692963_693482_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693491_693821_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693838_694129_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694154_696767_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696776_697136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697203_697737_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697733_698123_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698115_702072_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	708238	762168	4107422	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708238_709969_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710021_710450_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710452_711133_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711132_711591_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711627_712602_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712618_713935_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713966_714464_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714550_715240_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715239_716289_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716285_717080_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717248_717599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717574_718132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719261_720212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722349_723579_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723581_725024_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725128_726274_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726305_727103_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727127_728687_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728683_731056_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731165_732269_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732268_732961_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733104_733806_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733790_734168_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734899_735850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736009_736882_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737222_737441_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737480_738860_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738901_740299_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740338_741991_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741994_742879_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742878_743820_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743898_745518_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745684_746500_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746567_747137_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747137_748088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748742_749840_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749873_751139_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751296_752247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752490_753081_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753096_755541_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755660_756632_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756763_757288_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757247_758198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758419_760615_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760687_761116_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761217_762168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	853046	902310	4107422	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853046_853997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854014_854569_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854570_855005_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855001_855436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855419_856223_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856239_857055_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857051_857867_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858013_858715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858742_860701_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860783_861734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861954_862623_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862746_863853_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863865_866979_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866975_868469_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868483_869155_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869198_869693_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869833_870481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870584_872633_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872629_874642_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874667_876002_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876110_877103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877169_879254_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879278_880250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880378_881410_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881413_882565_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882735_883659_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883736_884561_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884757_885774_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885970_886954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888552_889941_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889971_890961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891071_892304_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892585_893386_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893408_895640_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896427_896874_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896895_897642_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897785_898763_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899396_900008_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900001_901219_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901359_902310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	911922	976862	4107422	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911922_912873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912869_914702_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915100_915760_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915853_916000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916108_916276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916287_916968_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917249_917966_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917980_919282_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921426_924315_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924538_925891_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925919_926441_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926437_927892_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927926_928175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928280_929156_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929181_930237_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930249_931041_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931073_932444_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933620_934571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934623_934845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935004_935217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935336_936455_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936960_937212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937324_938275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938271_938655_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938709_940524_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940673_941501_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941546_942527_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942523_942736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942732_943914_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944077_944812_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944813_947426_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947561_949475_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950090_950501_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950598_951684_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951782_952733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952729_953704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953828_954740_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955016_955409_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955538_956489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956518_956701_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957473_958655_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958870_959548_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959544_960270_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960395_960977_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961347_964029_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964028_965162_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965154_966240_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966326_967226_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967222_968551_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968565_969237_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969424_971140_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971141_971501_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971692_972007_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972049_973270_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973266_974208_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974204_975194_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975228_975813_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975911_976862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	996262	1059413	4107422	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996262_997213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997317_998367_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998504_999521_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001029_1001602_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001661_1002393_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002444_1003362_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004169_1007349_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007345_1008728_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008797_1009049_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009194_1009809_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1009995_1012110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012185_1013037_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013033_1013660_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013656_1015411_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015703_1018409_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018421_1020083_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020095_1021886_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022107_1023283_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023325_1024276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024374_1025115_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025309_1027346_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027363_1028374_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028491_1029685_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029714_1030488_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030484_1031675_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031700_1032639_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032635_1034984_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035138_1035780_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035883_1037017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037109_1037262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037293_1037842_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037860_1038346_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038523_1039462_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039464_1039782_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039827_1040772_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042452_1043103_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043156_1043492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043488_1044349_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044365_1044647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044720_1044984_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045227_1046178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046476_1047214_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047649_1047973_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048007_1048568_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048688_1049564_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049576_1050524_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050625_1050919_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050945_1053003_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053017_1053518_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053591_1055298_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056161_1057214_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057266_1057656_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057664_1058297_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058396_1059413_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1065397	1125460	4107422	transposase,protease,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065397_1066825_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067762_1068779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069111_1070047_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070096_1071977_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072043_1072388_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072532_1073669_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073665_1074739_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074896_1076333_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076423_1077065_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077400_1078417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080459_1081410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082612_1084034_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084297_1085014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085098_1085416_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085456_1085870_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085871_1086231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086273_1087818_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087901_1088732_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088766_1089921_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089963_1090836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090952_1093241_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094447_1094912_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094938_1095889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095906_1096044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096256_1097033_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097077_1097935_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097956_1098973_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099107_1100148_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100342_1102424_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102659_1104153_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104383_1105178_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105398_1106757_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106753_1107596_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107614_1109501_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109442_1109694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109738_1110371_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110389_1110992_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111143_1112094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112674_1113382_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113740_1114727_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114866_1115880_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115876_1116827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116844_1116985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116939_1117398_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117434_1118748_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118765_1119137_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119133_1120597_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120737_1121466_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121447_1124297_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124509_1125460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1156527	1218698	4107422	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156527_1157478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157576_1158200_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158373_1160656_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160810_1163507_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163632_1164121_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166531_1169402_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169447_1170662_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170891_1172319_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172416_1173508_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173520_1174279_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174366_1175269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175265_1176216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176345_1177329_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177383_1178106_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179584_1180940_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181020_1183396_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183560_1185636_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185697_1186498_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186599_1187562_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187549_1188305_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188412_1190050_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190117_1190855_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190957_1191533_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191705_1192242_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192244_1192589_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192604_1193450_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193488_1194868_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194945_1195827_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195925_1196876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196872_1197283_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197390_1198245_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198237_1199200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199245_1200370_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200475_1201354_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201478_1202258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202411_1203833_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204267_1205965_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206191_1207133_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207459_1208206_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208213_1209140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209261_1210179_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210218_1211172_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211196_1211775_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213448_1214057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214134_1214488_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214571_1215561_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215557_1215746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215763_1216714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216800_1217751_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217747_1218698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1269626	1326837	4107422	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269626_1270577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274323_1274935_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275157_1276618_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276714_1278307_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278660_1278918_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278919_1280260_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280355_1281045_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281057_1282488_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284212_1285034_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285044_1286616_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286644_1287622_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287648_1288452_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288448_1289243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289250_1290486_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290478_1290913_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291662_1292613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293234_1294962_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295073_1296432_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296488_1296707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296724_1297675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297715_1298786_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298808_1299687_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299858_1300830_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300992_1301835_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301996_1302677_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302670_1303840_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303836_1304868_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304911_1306153_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306187_1307720_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307800_1308424_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308454_1309066_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309101_1309572_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310003_1311008_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311044_1312559_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312562_1313522_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313550_1314354_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314355_1315990_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316073_1317135_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317333_1317603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317606_1318131_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318546_1319497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319493_1320528_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320636_1321275_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321569_1321797_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321919_1322633_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322877_1323828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323931_1324213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324327_1325776_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325886_1326837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1417070	1469223	4107422	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417070_1418021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418038_1418191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418187_1418541_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418553_1418916_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418957_1419383_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419585_1420842_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421040_1422021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422170_1423412_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423510_1424461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424469_1425165_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427986_1428586_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428596_1430762_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430785_1432570_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432569_1432659_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433353_1433626_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433625_1435692_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435688_1436639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436737_1437688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437803_1438136_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438132_1438819_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438805_1439765_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439806_1442167_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442166_1442799_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442900_1444241_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444287_1445643_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445768_1446413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446357_1446675_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446947_1447463_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447556_1447718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447733_1448489_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448827_1449034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449041_1449701_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449995_1452200_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452310_1453534_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453656_1454631_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454698_1455892_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455906_1456707_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456703_1458560_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458556_1459162_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459180_1460566_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461291_1462518_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462606_1463389_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463487_1464438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464464_1465238_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465249_1466491_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468272_1469223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1513148	1581234	4107422	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513148_1513637_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513754_1514333_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514438_1514807_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514905_1515856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515862_1516975_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517661_1518864_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518899_1519046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519067_1521728_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521740_1525145_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525812_1528038_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528084_1528411_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528461_1529070_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529168_1530119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530188_1530953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530949_1531549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531652_1532504_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532563_1533190_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533186_1534137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534235_1535348_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535337_1536339_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536444_1537956_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537952_1539257_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539368_1539929_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540196_1540751_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541206_1541422_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541676_1544274_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544270_1545458_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546116_1546731_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546819_1547947_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547958_1548864_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549756_1550707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550888_1551641_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551709_1552369_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552365_1553094_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553106_1555386_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555410_1555614_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555655_1556288_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556423_1557341_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557337_1558051_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558288_1559059_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559063_1559663_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559907_1561398_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561456_1561741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561878_1562034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562306_1563233_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563369_1564110_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564276_1565653_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565834_1566740_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568391_1570194_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570320_1570962_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571060_1572011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572032_1573253_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573438_1574851_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574914_1575982_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575981_1577469_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577478_1578423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578582_1579281_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579358_1580264_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580283_1581234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1617183	1672774	4107422	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617183_1618134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618192_1618966_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618958_1620515_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620511_1621462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622788_1623391_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623630_1624332_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624325_1625108_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625292_1626243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626341_1627079_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627268_1628027_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628073_1629063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629240_1630209_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631748_1632717_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632725_1633667_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634140_1635151_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635141_1636656_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636652_1637999_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1638001_1639036_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639085_1640711_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641263_1642214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642318_1643266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643319_1645134_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645126_1645801_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645930_1649005_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649018_1649318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649632_1650256_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650499_1651369_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651346_1652291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652376_1653303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653415_1654195_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654185_1655382_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655412_1656363_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656584_1657274_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657338_1658094_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658145_1659138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659147_1660101_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660216_1661179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662580_1663009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663005_1663956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664249_1664987_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665410_1666598_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666601_1666982_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668701_1669673_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669686_1670400_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670404_1671322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671428_1671725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671823_1672774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1777307	1834625	4107422	transposase,tRNA	Tupanvirus(16.67%)	56	NA	NA
WP_010930630.1|1777307_1778768_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1778787_1779432_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1779468_1780434_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1780532_1781483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1781612_1782578_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1782677_1783943_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1784336_1785353_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|1785696_1786197_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|1786238_1786553_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|1786562_1787504_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|1787500_1788025_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|1788027_1789296_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|1789324_1790308_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|1790304_1791114_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|1791110_1791914_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|1791928_1792696_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|1792783_1793422_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|1793426_1794380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|1794491_1795616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|1797253_1798081_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|1798077_1798881_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|1798877_1799969_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|1800375_1801404_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|1801562_1802267_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|1802275_1804396_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_076879641.1|1804396_1805422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|1805421_1805814_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|1805817_1806294_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|1806307_1806643_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|1806649_1807099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|1807306_1807606_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|1807658_1808771_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|1808775_1809414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|1809394_1810654_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|1810657_1812763_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|1812768_1814754_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|1814962_1815199_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|1815543_1816029_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1816396_1817347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1818904_1819555_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1819683_1820886_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1820963_1823000_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1823252_1823744_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1823959_1824472_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1824489_1825701_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1825738_1826149_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1826150_1826474_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1826476_1826989_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1827118_1828981_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1828990_1829332_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1829331_1829526_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1829650_1830544_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1830540_1831491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831615_1832425_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005012067.1|1832625_1833576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1833674_1834625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1862408	1903099	4107422	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1862408_1865033_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865019_1865274_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865340_1865922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866225_1866486_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866651_1867275_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867274_1868048_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868044_1869253_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869278_1869752_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869825_1870776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870874_1871825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871923_1873273_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874038_1874794_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874886_1877769_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878091_1878517_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878544_1879693_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879689_1880196_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880202_1881498_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881556_1882843_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882844_1883483_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883485_1884646_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884672_1886028_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886031_1887102_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887240_1887477_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887564_1888671_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888636_1889941_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889959_1890859_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1891042_1892200_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1892276_1893572_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1893685_1894225_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1894502_1894715_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1894734_1896765_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1896790_1896985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1897450_1899733_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1900142_1900442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1900726_1901140_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1901099_1902050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902148_1903099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1914303	1963699	4107422	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1914303_1915254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915250_1916525_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916628_1917822_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917818_1918472_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918468_1919905_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919892_1920252_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921066_1921207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921224_1922175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923220_1925086_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925343_1926864_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926951_1927602_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928550_1929846_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929867_1930752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930850_1931726_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931715_1932072_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932202_1933177_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933306_1933486_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933583_1934108_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934118_1934955_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935067_1935439_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935435_1935987_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936002_1937694_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937742_1938423_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938670_1939135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939304_1940234_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940246_1940894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940967_1942785_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942868_1943819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944471_1945422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1945440_1945788_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1945816_1947256_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1947274_1947670_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1947844_1948453_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1948465_1949284_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1949235_1950210_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1950238_1951300_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1951296_1953513_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1953526_1953985_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1954142_1954487_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1954643_1955549_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1955635_1956649_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1958628_1959645_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1959787_1961140_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1961314_1961611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1962748_1963699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	1975195	2039564	4107422	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975195_1976146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976367_1977318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977416_1978382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978519_1979419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982013_1983501_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983511_1984708_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984780_1986100_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986096_1986972_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987002_1988151_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988168_1988483_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988504_1989227_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989226_1990045_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990049_1990577_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990582_1991839_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992197_1993337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993414_1994287_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995157_1996108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996067_1996703_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997062_1998385_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998703_1999525_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000949_2001522_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001561_2003391_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003353_2004412_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004449_2004911_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004995_2005742_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007232_2010463_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010529_2011861_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012113_2012488_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012590_2013769_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013779_2014370_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014480_2015287_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015312_2016107_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017107_2018082_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018240_2018753_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018909_2019881_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021625_2022432_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022428_2023730_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023680_2024445_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024558_2025329_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025413_2026601_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026673_2027048_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027148_2028411_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028407_2029265_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029437_2030439_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030890_2031841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033356_2034556_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034924_2035161_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035224_2035392_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035505_2037311_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037564_2038515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038613_2039564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2171093	2220746	4107422	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171093_2172044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172142_2174137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174196_2175162_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175151_2178013_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178015_2178522_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178626_2179835_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179836_2180775_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180936_2181410_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181406_2182357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182467_2182908_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183036_2184266_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184304_2185126_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185179_2186331_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186422_2186911_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189461_2192011_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192081_2194655_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194920_2195121_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195152_2195314_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195371_2195710_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195858_2196809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197583_2198252_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198233_2200249_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200431_2201181_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201193_2202057_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202060_2203476_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203609_2204338_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204476_2204677_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204852_2205251_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205274_2206675_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206793_2207546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207834_2208434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208538_2209318_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209314_2210199_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210216_2210996_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210980_2211739_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211864_2212512_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212779_2213796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213893_2214934_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215068_2216361_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217720_2218104_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218121_2218709_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218746_2219697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219795_2220746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2477052	2535296	4107422	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477052_2478003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478482_2479139_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479153_2480821_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480823_2481453_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481664_2482759_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482903_2483716_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483719_2485423_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485473_2486604_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486790_2487867_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487948_2488599_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488613_2490017_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490300_2491119_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491115_2491820_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492719_2493835_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493868_2494243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494265_2495423_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495435_2495669_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496303_2499273_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499287_2499497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499648_2500278_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500274_2502365_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502388_2503069_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503065_2503626_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503632_2504730_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504882_2505476_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505472_2506765_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506778_2507321_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507330_2508167_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508200_2509262_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509303_2510356_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510371_2510674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510815_2511766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511783_2511948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511944_2513639_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513635_2514721_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514768_2515668_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515678_2516323_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517344_2520587_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520597_2521752_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521978_2522941_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523039_2523990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524088_2525039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525048_2525738_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525797_2526235_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526280_2527174_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527221_2528394_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528390_2529545_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529741_2530092_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530081_2530516_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530532_2531483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531630_2532098_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532078_2533236_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533301_2534228_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534345_2535296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2577574	2644074	4107422	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577574_2578525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578894_2579467_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579469_2580480_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580472_2580973_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580983_2581325_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581336_2582128_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582144_2582414_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582436_2583225_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2583271_2584288_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584504_2585947_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586125_2587745_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587865_2589686_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589764_2591297_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591330_2592977_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593046_2594069_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594086_2595220_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595222_2595912_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595911_2596697_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596740_2597505_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597543_2598965_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599030_2599735_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599782_2600202_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600214_2600622_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600805_2601516_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601642_2601933_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601950_2602433_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606938_2608093_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608398_2609415_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609661_2610450_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610516_2611197_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611193_2611964_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612062_2613013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613068_2613986_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613996_2615175_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615194_2616190_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617778_2618387_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618374_2619415_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619432_2620395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620391_2621585_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621581_2622379_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622404_2623391_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623409_2625449_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625650_2626331_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626344_2627256_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627252_2627831_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627969_2628875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628882_2632302_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632289_2634890_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635845_2636478_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636871_2637630_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637626_2638829_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639016_2639967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640874_2642020_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642006_2642762_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642878_2643058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643123_2644074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2672189	2709601	4107422	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672189_2673140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673238_2674189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674281_2674821_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674927_2675272_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675329_2676778_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676965_2677301_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678928_2680107_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680189_2680690_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680799_2681501_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681512_2681977_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681991_2682267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682263_2683040_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683068_2683896_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684021_2684492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684618_2685512_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685559_2686741_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686753_2687569_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687702_2688230_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688226_2688724_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688871_2689249_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689470_2690421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690519_2691131_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691365_2692493_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692603_2693692_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693744_2694596_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694615_2695497_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695673_2696987_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697197_2698031_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698027_2698609_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698962_2699913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699928_2701044_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701146_2702073_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702072_2703311_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703307_2704075_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704075_2704777_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704858_2705305_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706194_2706833_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707601_2708552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708650_2709601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2808728	2872219	4107422	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_023853639.1|2808728_2809679_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810007_2810613_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810666_2811980_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812054_2812525_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812524_2813313_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813323_2814976_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815063_2816014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817175_2817682_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817678_2818443_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818458_2818743_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818807_2819797_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819968_2820898_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820869_2821556_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821589_2822135_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822179_2823445_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823441_2824344_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825525_2826470_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826564_2828082_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828123_2829752_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829859_2830741_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833853_2834228_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834252_2834591_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834634_2836269_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836307_2837654_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837761_2839183_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839252_2839837_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839939_2840890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841024_2842131_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842141_2843239_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843383_2844589_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844595_2845117_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845113_2845605_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845601_2845853_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845833_2846319_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846454_2849916_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849933_2850818_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850827_2851259_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851505_2852009_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852086_2853487_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853561_2854437_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854433_2855441_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855908_2856214_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856304_2856895_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857085_2858102_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858293_2860630_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860712_2861147_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2862292_2863243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863239_2864034_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864065_2864770_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864844_2865645_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865641_2866049_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866045_2866687_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866679_2868680_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869940_2871272_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871268_2872219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2886694	2928053	4107422	transposase,protease	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2886694_2887645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887662_2887821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887975_2891797_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891953_2892622_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892626_2894300_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894318_2895638_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895642_2897958_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898013_2900182_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900178_2905368_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905457_2905772_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905999_2906245_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906339_2906858_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906957_2908163_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908278_2909676_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909792_2910371_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910443_2911835_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912002_2912953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913233_2913854_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913850_2914264_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914260_2915304_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915359_2915548_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915557_2916322_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916412_2917069_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917160_2917919_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917944_2919546_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919746_2920751_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920851_2921115_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921232_2922009_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922599_2923550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925933_2927046_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927102_2928053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	2958439	3012670	4107422	transposase	Planktothrix_phage(16.67%)	50	NA	NA
WP_005012067.1|2958439_2959390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959407_2959557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959510_2960407_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962684_2964910_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965074_2966163_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966119_2966773_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966820_2967618_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968149_2969100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969174_2970329_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970385_2971336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971434_2971740_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971768_2972203_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972204_2973449_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973445_2974156_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974170_2975082_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975444_2975849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975845_2976304_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976310_2977219_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977215_2978082_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978068_2978896_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978906_2980034_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981111_2982350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982391_2983654_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983660_2984413_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984464_2984650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984925_2985390_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985421_2986081_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986225_2988334_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988330_2989281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989384_2990005_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990096_2990849_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991983_2993108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993153_2993522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993763_2994714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995749_2996292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996489_2996660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996677_2997628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997624_2998590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998659_2999496_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000008_3001118_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001179_3002130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3002322_3003105_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3003118_3003868_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3003895_3005242_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3005267_3006197_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3006312_3007218_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3007235_3008435_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3008507_3009200_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3009248_3011675_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3011719_3012670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	3382075	3447008	4107422	transposase,tRNA	Staphylococcus_phage(20.0%)	55	NA	NA
WP_023995489.1|3382075_3383026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383430_3384075_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384099_3384684_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384784_3385402_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385404_3387120_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387116_3387425_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387441_3388059_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388103_3388406_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388506_3389361_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389548_3389773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389942_3390215_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390632_3391040_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391409_3392204_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392304_3393540_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393608_3394625_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394636_3396013_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396009_3397206_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397202_3398741_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398737_3399997_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401937_3402888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403654_3404749_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404741_3406076_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406029_3406713_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406738_3407902_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407898_3408900_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408899_3409772_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409768_3410518_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410514_3411306_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411302_3412442_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412717_3413503_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413536_3414319_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414322_3414712_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415851_3416715_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416750_3417839_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3419138_3422117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423043_3423922_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425870_3426821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426817_3427285_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427327_3428098_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428118_3428919_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428929_3430339_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430433_3431219_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431458_3432475_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432582_3432975_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433112_3433793_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433797_3434769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434864_3435815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3437319_3438021_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438020_3439445_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440514_3441855_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3441970_3443734_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443845_3444724_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444836_3445652_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445655_3445907_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445991_3447008_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	3464752	3517157	4107422	transposase,tRNA	Acinetobacter_phage(37.5%)	48	NA	NA
WP_010931363.1|3464752_3465769_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465864_3466575_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466571_3467561_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467656_3469288_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469290_3470028_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470183_3471056_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471324_3472545_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472541_3473201_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473272_3473905_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473934_3474453_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474463_3475573_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475619_3476474_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476475_3477378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478600_3479551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481305_3482295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482291_3482450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482470_3483259_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483255_3484287_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484305_3484869_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484924_3486445_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486708_3487413_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487420_3488158_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488263_3488638_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488680_3489970_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489966_3491136_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491132_3491972_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492031_3492967_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492979_3493930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494028_3494991_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495022_3495382_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495506_3496409_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496410_3498183_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498217_3498994_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500317_3501268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3502119_3502440_+	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_003815364.1|3502512_3503394_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503510_3503753_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3503890_3504361_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3504373_3504913_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3504947_3506489_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506587_3507493_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507535_3508936_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3508945_3509368_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509550_3510435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510510_3511587_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3511893_3513996_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3514038_3516108_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3516206_3517157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	3534275	3588076	4107422	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3534275_3535226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535566_3536517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536615_3537566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537862_3538360_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538402_3540178_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540185_3541052_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541058_3541793_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542962_3543757_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544046_3544637_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544670_3545999_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546073_3547219_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547330_3548329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548291_3548726_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550242_3551127_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551123_3552329_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552325_3553186_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553298_3555089_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555129_3555795_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555795_3556104_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556269_3557556_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3558989_3559940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561891_3563106_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563211_3564201_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564197_3564806_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564818_3565448_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565444_3566065_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566096_3566888_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567739_3568195_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568213_3569140_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569193_3570480_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571410_3572283_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572279_3573230_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573328_3574279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3574383_3574614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3574740_3575130_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3575146_3577528_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3577520_3578897_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3578912_3579908_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3579926_3580919_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3581159_3581720_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3581724_3582051_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3582087_3582900_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3582910_3583993_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3584079_3585354_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3586076_3587027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3587125_3588076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013088	Bordetella pertussis strain J178 chromosome, complete genome	4107422	4029593	4083025	4107422	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029593_4030544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030713_4031940_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032139_4033006_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032998_4033961_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034061_4035012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035110_4036061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036159_4037110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037106_4038600_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038596_4041704_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041700_4044769_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044765_4046016_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046196_4046958_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046990_4047641_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047643_4048483_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048723_4049467_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049549_4049897_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049994_4050837_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050881_4051769_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051795_4051984_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052081_4053539_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053525_4055052_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055070_4055538_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055537_4056560_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056680_4057400_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057475_4058576_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058577_4059768_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059887_4060904_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061222_4061894_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061890_4062799_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063010_4063658_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067509_4068586_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068596_4069406_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069495_4070269_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070269_4070434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070451_4071402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071290_4072313_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072302_4073457_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073496_4074909_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075033_4075900_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075901_4076726_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076722_4077484_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077564_4078251_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078424_4079432_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079428_4080208_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080265_4081528_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082074_4083025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
