The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	0	59497	4112694	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	70134	123122	4112694	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	165943	226454	4112694	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190580_191054_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194124_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212205_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	234386	287974	4112694	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_010929591.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279158_279305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279587_279728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281475_282330_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	391907	449416	4112694	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	590421	651612	4112694	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591868_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624048_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639098_640532_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647294_648176_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	656936	703127	4112694	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	709293	763223	4112694	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720316_721267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759474_761670_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761742_762171_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762272_763223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	854101	903365	4112694	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854101_855052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855069_855624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855625_856060_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856056_856491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856474_857278_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857294_858110_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858106_858922_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859068_859770_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859797_861756_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861838_862789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863009_863678_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863801_864908_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864920_868034_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868030_869524_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869538_870210_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870253_870748_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870888_871536_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871639_873688_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873684_875697_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875722_877057_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877165_878158_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878224_880309_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880333_881305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881433_882465_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882468_883620_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883790_884714_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884791_885616_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885812_886829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894463_896695_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902414_903365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	912977	977917	4112694	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912977_913928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913924_915757_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916908_917055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917163_917331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919035_920337_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922481_925370_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929335_930211_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930236_931292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934675_935626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938379_939330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939326_939710_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939764_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941728_942556_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945132_945867_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945868_948481_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952837_953788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953784_954759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956071_956464_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956593_957544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957573_957756_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959925_960603_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960599_961325_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961450_962032_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965083_966217_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966209_967295_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967381_968281_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969620_970292_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970479_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972747_973062_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973104_974325_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974321_975263_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975259_976249_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976283_976868_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976966_977917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	997323	1048288	4112694	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_010929591.1|997323_998274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998378_999428_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|999565_1000582_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002090_1002663_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002722_1003454_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003505_1004423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005230_1008410_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008406_1009789_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009858_1010110_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010255_1010870_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011056_1013171_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013246_1014098_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014094_1014721_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014717_1016472_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016764_1019470_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019482_1021144_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021156_1022947_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023168_1024344_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024386_1025337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1025435_1026386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026484_1027225_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027419_1029456_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029473_1030484_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030601_1031795_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031824_1032598_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032594_1033785_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033810_1034749_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034745_1037094_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037248_1037890_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037993_1039127_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039219_1039372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039403_1039952_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039970_1040456_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040633_1041572_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041574_1041892_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041937_1042882_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044562_1045213_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045266_1045602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045598_1046459_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046475_1046757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046830_1047094_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047337_1048288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1060506	1119986	4112694	holin,transposase,protease,tRNA	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_010931363.1|1060506_1061523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062311_1063361_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063357_1065001_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064997_1065885_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066025_1066499_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066488_1067511_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067507_1068935_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069872_1070889_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071221_1072157_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072206_1074087_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074153_1074498_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074642_1075779_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075775_1076849_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077006_1078443_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078533_1079175_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1079510_1080527_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1082467_1083418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084722_1086144_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086407_1087124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087208_1087526_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087566_1087980_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087981_1088341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088383_1089928_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090011_1090842_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090876_1092031_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092073_1092946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062826528.1|1093062_1095351_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096557_1097022_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097048_1097999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098016_1098154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098366_1099143_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099187_1100045_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100066_1101083_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101217_1102258_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102452_1104534_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104769_1106263_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106493_1107288_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107508_1108867_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108863_1109706_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109724_1111611_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111552_1111804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111848_1112481_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112499_1113102_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113253_1114204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114784_1115492_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1115725_1116676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812707.1|1116899_1117886_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118025_1119039_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119035_1119986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1319007	1387494	4112694	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319007_1319958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320726_1321365_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322254_1322701_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322782_1323484_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323484_1324252_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324248_1325487_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325486_1326413_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326515_1327631_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327646_1328597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328950_1329532_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329528_1330362_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330572_1331886_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332062_1332944_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332963_1333815_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333867_1334956_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335066_1336194_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336428_1337040_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337138_1338089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338310_1338688_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338835_1339333_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339329_1339857_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339990_1340806_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340818_1342000_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342047_1342941_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343067_1343538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343663_1344491_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344519_1345296_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345292_1345568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345582_1346047_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346058_1346760_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346869_1347370_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347452_1348631_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350258_1350594_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350781_1352230_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352287_1352632_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352738_1353278_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353370_1354321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354338_1354578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355059_1355491_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355672_1356077_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357313_1357637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357639_1358527_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358559_1358985_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359056_1359410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359649_1360156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360194_1361526_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361585_1362401_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362397_1363252_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366314_1368858_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370224_1371979_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371975_1374096_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374100_1376296_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376292_1379634_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382436_1383387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383452_1383632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383748_1384504_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384490_1385636_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386543_1387494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1447985	1503473	4112694	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447985_1448936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450137_1450584_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450576_1452052_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452048_1452804_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452796_1453807_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453796_1455473_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455785_1456118_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456131_1456527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456536_1456863_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456859_1457186_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1457112_1457526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458130_1458481_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458528_1458957_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458964_1460338_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460478_1460856_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461118_1462426_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462486_1463317_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463313_1463802_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463843_1465364_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465407_1465884_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466687_1469285_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469314_1470136_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470862_1471612_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471795_1472674_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472771_1473488_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473502_1474063_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474229_1474994_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475013_1475871_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475867_1477067_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477106_1478441_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478493_1480830_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480955_1481519_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481527_1482619_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482690_1483146_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483146_1483941_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483937_1485119_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485105_1485711_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485707_1486481_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486492_1487320_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487481_1489845_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489913_1490633_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490756_1491182_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491216_1492167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492284_1493211_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493276_1494434_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494414_1494882_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495029_1495980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495996_1496431_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496420_1496771_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496967_1498122_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498118_1499291_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499338_1500232_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500277_1500715_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500774_1501464_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501473_1502424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502522_1503473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1598171	1658084	4112694	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598171_1598660_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598777_1599356_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599461_1599830_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599928_1600879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600885_1601998_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602684_1603887_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603922_1604069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604090_1606751_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606763_1610168_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610835_1613061_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613107_1613434_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613484_1614093_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614191_1615142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615240_1616191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616260_1617025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617021_1617621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617724_1618576_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618635_1619262_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619258_1620209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620307_1621420_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621409_1622411_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622516_1624028_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624024_1625329_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625440_1626001_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626268_1626823_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627278_1627494_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627748_1630346_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630342_1631530_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632189_1632804_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632892_1634020_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634031_1634937_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635829_1636780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636961_1637714_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637782_1638442_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638438_1639167_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639179_1641459_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641483_1641687_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641728_1642361_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642496_1643414_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643410_1644124_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644361_1645132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645136_1645736_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645980_1647471_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647529_1647814_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647951_1648107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648379_1649306_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649442_1650183_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650349_1651726_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651907_1652813_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654464_1656267_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656393_1657035_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1657133_1658084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1703256	1752536	4112694	transposase	Brazilian_cedratvirus(25.0%)	41	NA	NA
WP_005013747.1|1703256_1704207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704265_1705039_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705031_1706588_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706584_1707535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708861_1709464_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709703_1710405_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710398_1711181_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711365_1712316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712414_1713152_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713341_1714100_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714146_1715136_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715313_1716282_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717821_1718790_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718798_1719740_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720213_1721224_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721214_1722729_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722725_1724072_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724074_1725109_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725158_1726784_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727336_1728287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728391_1729339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729392_1731207_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731199_1731874_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732003_1735078_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735091_1735391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735705_1736329_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736572_1737442_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737419_1738364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738449_1739376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739488_1740268_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740258_1741455_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741485_1742436_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742657_1743347_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743411_1744167_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744218_1745211_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745220_1746174_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746289_1747252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748653_1749082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749078_1750029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750322_1751060_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005012808.1|1751585_1752536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	1992660	2062312	4112694	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992660_1995318_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995395_1996598_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996594_1997107_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997229_1997667_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997943_1998894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998992_1999943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2000196_2002002_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2002115_2002283_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002346_2002583_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002951_2004151_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005666_2006617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007068_2008070_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008242_2009100_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009096_2010359_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010459_2010834_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2010906_2012094_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012178_2012949_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013062_2013827_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013777_2015079_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2015075_2015882_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2017626_2018598_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018754_2019267_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019425_2020400_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021400_2022195_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022220_2023027_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023137_2023728_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023738_2024917_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025019_2025394_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025646_2026978_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027044_2030275_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031765_2032512_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032596_2033058_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033095_2034154_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034116_2035946_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035985_2036558_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037982_2038804_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039122_2040445_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040804_2041440_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041399_2042350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043220_2044093_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044170_2045310_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045668_2046925_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046930_2047458_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047462_2048281_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048280_2049003_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049024_2049339_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049356_2050505_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050535_2051411_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051407_2052727_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052799_2053996_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054006_2055494_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058088_2058988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059125_2060091_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060189_2061140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061361_2062312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2073808	2123204	4112694	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073808_2074759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075896_2076193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076367_2077720_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077862_2078879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080858_2081872_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2081958_2082864_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083020_2083365_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083522_2083981_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083994_2086211_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086207_2087269_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087297_2088272_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088223_2089042_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089054_2089663_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2089837_2090233_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090251_2091691_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091719_2092067_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092085_2093036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093688_2094639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094722_2096540_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096613_2097261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097273_2098203_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098372_2098837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099084_2099765_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099813_2101505_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101520_2102072_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102068_2102440_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102552_2103389_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103399_2103924_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104021_2104201_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104330_2105305_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105435_2105792_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_077069193.1|2105781_2106657_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106755_2107640_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107661_2108957_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109905_2110556_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2110643_2112164_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112421_2114287_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115332_2116283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116300_2116441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117255_2117615_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117602_2119039_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119035_2119689_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119685_2120879_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120982_2122257_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122253_2123204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2134408	2175099	4112694	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2134408_2135359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135457_2136408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136367_2136781_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137065_2137365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137774_2140057_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2140522_2140717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2140742_2142773_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142792_2143005_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143282_2143822_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143935_2145231_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145307_2146465_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146648_2147548_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147566_2148871_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148836_2149943_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150030_2150267_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150405_2151476_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151479_2152835_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2152861_2154022_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154024_2154663_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2154664_2155951_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2156009_2157305_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157311_2157818_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157814_2158963_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158990_2159416_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159738_2162621_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162713_2163469_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164234_2165584_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165682_2166633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166731_2167682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167755_2168229_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168254_2169463_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169459_2170233_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170232_2170856_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171021_2171282_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171585_2172167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172233_2172488_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172474_2175099_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2202882	2268431	4112694	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202882_2203833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204033_2204843_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2204967_2205918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205914_2206808_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206932_2207127_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207126_2207468_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207477_2209340_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209469_2209982_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209984_2210308_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210309_2210720_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210757_2211969_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211986_2212499_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212714_2213206_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213458_2215495_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215572_2216775_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216903_2217554_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219111_2220062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220632_2220845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220862_2221594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221628_2222270_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222262_2222931_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225143_2225920_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225941_2227099_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227095_2227527_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2227523_2228327_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228340_2228742_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228808_2229780_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229845_2231069_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231296_2232247_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232370_2234824_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235012_2236317_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236421_2237075_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237077_2238388_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2238584_2239145_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239256_2239457_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239802_2240369_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240452_2240656_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240962_2241283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241324_2241606_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241680_2242937_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243319_2243649_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245219_2246041_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246040_2247180_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247186_2248083_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248079_2250005_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250364_2252977_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253029_2255330_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255326_2256535_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2256796_2257171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257167_2258118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258216_2260211_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260270_2261236_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261225_2264087_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264089_2264596_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264700_2265909_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265910_2266849_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267010_2267484_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267480_2268431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2354607	2418185	4112694	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2354607_2355558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355859_2356336_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356959_2358597_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358627_2359941_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360074_2360392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360492_2361815_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361811_2362762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362860_2363811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364340_2365363_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365391_2366222_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366238_2367936_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2368000_2369077_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369236_2370100_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370130_2370700_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2370716_2371568_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372625_2373507_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373581_2374571_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374633_2375584_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375646_2376504_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376563_2377052_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378624_2379815_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379811_2381398_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381416_2382484_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382588_2384133_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384552_2386127_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2386234_2387251_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387247_2388087_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388091_2389729_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389725_2390676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2390693_2390837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2390818_2392093_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392122_2392413_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392485_2393499_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393518_2394781_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394783_2395707_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395703_2397197_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397207_2398140_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398321_2399647_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2399681_2401025_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401097_2402618_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402772_2403504_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2403571_2404912_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404927_2405839_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405829_2406423_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406484_2406871_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406882_2407353_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407364_2407988_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408008_2410756_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417234_2418185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2690171	2730839	4112694	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690171_2691122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691232_2691415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691514_2692111_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692294_2693386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693885_2694296_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2694354_2694696_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2694701_2697119_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697131_2698154_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698228_2698588_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698603_2698801_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699136_2700087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700280_2700730_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700726_2701677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701787_2703236_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2703350_2703632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703735_2704686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704930_2705644_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705766_2705994_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706288_2706927_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707035_2708070_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708066_2709017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709432_2709957_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709960_2710230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710428_2711490_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711573_2713208_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713209_2714013_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714041_2715001_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715004_2716519_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716555_2717560_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717991_2718462_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718497_2719109_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719139_2719763_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719843_2721376_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2721410_2722652_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722695_2723727_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723723_2724893_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2724886_2725567_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2725728_2726571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726733_2727705_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727876_2728755_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728777_2729848_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729888_2730839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2786304	2864315	4112694	transposase,tRNA	Moraxella_phage(14.29%)	60	NA	NA
WP_003810909.1|2786304_2786721_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786831_2787464_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787492_2787936_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787957_2789049_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2789103_2789904_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790039_2790660_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2790799_2791273_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792412_2793363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793359_2801021_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801261_2805308_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805620_2806202_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806198_2807497_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807576_2808605_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010927663.1|2809811_2810762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811078_2811684_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2811737_2813051_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813125_2813596_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813595_2814384_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814394_2816047_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931075.1|2818245_2818752_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818748_2819513_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819528_2819813_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819877_2820867_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821038_2821968_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821939_2822626_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822659_2823205_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823249_2824515_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824511_2825414_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826595_2827540_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827634_2829152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829193_2830822_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830929_2831811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834923_2835298_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835322_2835661_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835704_2837339_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837377_2838724_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2838831_2840253_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840322_2840907_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841009_2841960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842094_2843201_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843211_2844309_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844453_2845659_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845665_2846187_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2846183_2846675_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846671_2846923_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846903_2847389_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847524_2850986_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851003_2851888_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851897_2852329_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852575_2853079_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853156_2854557_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854631_2855507_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855503_2856511_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856978_2857284_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857374_2857965_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858155_2859172_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859363_2861700_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861782_2862217_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862315_2863266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863364_2864315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2872340	2929125	4112694	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2872340_2873291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874997_2875264_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875971_2876310_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880862_2881465_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881561_2882851_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882908_2883640_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883636_2884440_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884436_2885525_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885521_2886451_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886599_2887745_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887766_2888717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888734_2888893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889047_2892869_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893025_2893694_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893698_2895372_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895390_2896710_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896714_2899030_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899085_2901254_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2901250_2906440_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906529_2906844_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907071_2907317_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907411_2907930_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908029_2909235_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909350_2910748_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910864_2911443_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911515_2912907_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913074_2914025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914305_2914926_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914922_2915336_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915332_2916376_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916431_2916620_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916629_2917394_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917484_2918141_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918232_2918991_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919016_2920618_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920818_2921823_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921923_2922187_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922304_2923081_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923671_2924622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927005_2928118_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928174_2929125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	2959511	3003202	4112694	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2959511_2960462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960479_2960629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960582_2961479_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963756_2965982_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966146_2967235_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967191_2967845_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967892_2968690_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969221_2970172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2970246_2971401_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971457_2972408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972506_2972812_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972840_2973275_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973276_2974521_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974517_2975228_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975242_2976154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976516_2976921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976917_2977376_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2977382_2978291_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2978287_2979154_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979140_2979968_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979978_2981106_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982183_2983422_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983463_2984726_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984732_2985485_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985536_2985722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985997_2986462_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986493_2987153_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987297_2989406_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989402_2990353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990456_2991077_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2991168_2991921_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993055_2994180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994225_2994594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994835_2995786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996821_2997364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997561_2997732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997749_2998700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2998696_2999662_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999731_3000568_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001080_3002190_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002251_3003202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	3385246	3505491	4112694	transposase,tRNA	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3385246_3386197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386601_3387246_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387270_3387855_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387955_3388573_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388575_3390291_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390287_3390596_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390612_3391230_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391274_3391577_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391677_3392532_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392719_3392944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393113_3393386_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393803_3394211_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394580_3395375_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395475_3396711_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396779_3397796_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397807_3399184_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399180_3400377_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400373_3401912_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401908_3403168_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405108_3406059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406825_3407920_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407912_3409247_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409200_3409884_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409909_3411073_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3411069_3412071_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412070_3412943_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412939_3413689_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413685_3414477_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414473_3415613_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415888_3416674_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416707_3417490_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417493_3417883_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3419022_3419886_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3419921_3421010_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3421006_3421957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422310_3425289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426215_3427094_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3428058_3429009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3430091_3431042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3431038_3431506_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3431548_3432319_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3432339_3433140_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3433150_3434560_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3434654_3435440_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435679_3436696_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436803_3437196_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3437333_3438014_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3438018_3438990_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3439085_3440036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3441540_3442242_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3442241_3443666_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3444735_3446076_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3446191_3447955_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3448066_3448945_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3449057_3449873_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449876_3450128_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3450212_3451229_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3451559_3451781_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3454141_3455059_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3455556_3456765_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456844_3458416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3458533_3459469_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459657_3460602_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3461169_3466887_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466892_3468020_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3468075_3468702_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3468973_3469990_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3470085_3470796_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470792_3471782_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471877_3473509_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3473511_3474249_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3474404_3475277_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3475545_3476766_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476762_3477422_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3477493_3478126_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3478155_3478674_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478684_3479794_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479840_3480695_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480696_3481599_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482821_3483772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3485528_3486518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3486514_3486673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3486693_3487482_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3487478_3488510_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3488528_3489092_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3489147_3490668_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490931_3491636_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3491643_3492381_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3492486_3492861_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492903_3494193_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3494189_3495359_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3495355_3496195_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3496254_3497190_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3497202_3498153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3498251_3499214_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3499245_3499605_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499729_3500632_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3500633_3502406_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3502440_3503217_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3504540_3505491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	3520429	3578502	4112694	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3520429_3521380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3521508_3522642_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522685_3523591_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3523593_3525294_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3525290_3526211_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3526218_3527196_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3527254_3528289_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3530263_3530500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3530626_3531490_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3531578_3532400_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3532479_3533217_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3533213_3534206_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3534319_3534982_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3535026_3536175_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3538498_3539449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539789_3540740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540838_3541789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3542085_3542583_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3542625_3544401_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3544408_3545275_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3545281_3546016_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3547185_3547980_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3548269_3548860_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548893_3550222_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3550296_3551442_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3551553_3552552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3552514_3552949_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3554465_3555350_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3555346_3556552_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3556548_3557409_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3557521_3559312_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3559352_3560018_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3560018_3560327_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3560492_3561779_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3563212_3564163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3566114_3567329_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3567434_3568424_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3568420_3569029_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3569041_3569671_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569667_3570288_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3570319_3571111_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571962_3572418_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3572436_3573363_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3573416_3574703_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3575633_3576506_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3576502_3577453_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3577551_3578502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013091	Bordetella pertussis strain J192 chromosome, complete genome	4112694	4034865	4088297	4112694	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4034865_4035816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4035985_4037212_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4037411_4038278_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4038270_4039233_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4039333_4040284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4040382_4041333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4041431_4042382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4042378_4043872_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4043868_4046976_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4046972_4050041_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4050037_4051288_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4051468_4052230_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4052262_4052913_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4052915_4053755_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4053995_4054739_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4054821_4055169_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4055266_4056109_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4056153_4057041_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4057067_4057256_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4057353_4058811_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4058797_4060324_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4060342_4060810_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4060809_4061832_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4061952_4062672_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4062747_4063848_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4063849_4065040_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4065159_4066176_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4066494_4067166_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4067162_4068071_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4068282_4068930_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4072781_4073858_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4073868_4074678_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4074767_4075541_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4075541_4075706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4075723_4076674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4076562_4077585_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4077574_4078729_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4078768_4080181_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4080305_4081172_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4081173_4081998_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4081994_4082756_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4082836_4083523_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4083696_4084704_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4084700_4085480_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4085537_4086800_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4087346_4088297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
